View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2631_high_3 (Length: 441)
Name: NF2631_high_3
Description: NF2631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2631_high_3 |
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| [»] scaffold0127 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 11 - 423
Target Start/End: Complemental strand, 5746457 - 5746045
Alignment:
| Q |
11 |
cacagaggcggtcaacaacagaaacacaaagagttcaccattatccacctacacatcacctccctacctaaacaacgtctacaccccctcaaaatcacct |
110 |
Q |
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|||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
5746457 |
cacaaaggcgatcaacaacagaaacacaaagagttcaccattatccacctacacatcacctccctacctaaacaacgtctacaccccctctaaatcacct |
5746358 |
T |
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| Q |
111 |
tttgtccactgcgtgttctaatagatccgagttcaaattatccacgaccaccccatccagaccacaccactaccgccaccataaatcaccactcaatcta |
210 |
Q |
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||||||||| ||||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
5746357 |
tttgtccaccgcgtgttctgatagatctgagtccaaattatccacgaccaccccatccagaccacaccgctaccgccaccataaatcaccactcaatcta |
5746258 |
T |
|
| Q |
211 |
acacctgcacttcctcccccaaccatctcgcaacacaactatcaccaccacaacaaaaccaacgccaactatgaccatcctgtgatacaccacaacgtac |
310 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |
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| T |
5746257 |
acacctgcacttcctcccccaaccatctcacaacacaactatcaccaccacaacaaaaccaacgccaactatgatcatcctgtgagacaccacaacgtac |
5746158 |
T |
|
| Q |
311 |
ccatacatcaccaccacaaaatcatcaacacaaccataaaccacgtaaatggccgggggaaaatcgccaaagaaaacatgacaaaccgactcctcaaaga |
410 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
5746157 |
ccatacatcaccaccacaaaatcaccaacacaaccataaaccacgtaaatggccggggaaaaatcgccaaagaaaacatgacaaaccgactcctcaaaga |
5746058 |
T |
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| Q |
411 |
cgacccaccacag |
423 |
Q |
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| T |
5746057 |
cgacccaccacag |
5746045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 126; Significance: 8e-65; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 37 - 334
Target Start/End: Original strand, 1820378 - 1820674
Alignment:
| Q |
37 |
caaagagttcaccattatccacctacacatcacctccctacctaaacaacgtctacaccccctcaaaatcaccttttgtccactgcgtgttctaatagat |
136 |
Q |
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||||||| | |||| || |||||| | |||||||| | ||||||||||||||| ||||| ||| |||||||||| ||||||| | | ||| |||||| |
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| T |
1820378 |
caaagagctaaccactaaccaccttcccatcacctacatacctaaacaacgtccacacctgctctaaatcaccttatgtccaccgtgagtttcgatagat |
1820477 |
T |
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| Q |
137 |
ccgagttcaaattatccacgaccaccccatccagaccacaccactaccgccaccataaatcaccactcaatctaacacctgcacttcctcccccaaccat |
236 |
Q |
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| T |
1820478 |
ccgagtccggattatccacgaccaccccattcaaaccacaccactactgctaccataaatgaccactcaaaccaacacctacacttcctcccccaaccat |
1820577 |
T |
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| Q |
237 |
ctcgcaacacaactatcaccaccacaacaaaaccaacgccaactatgaccatcctgtgatacaccacaacgtacccatacatcaccaccacaaaatca |
334 |
Q |
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| T |
1820578 |
ctcgcaacacaactatcaccaccatcac-aaacaaacgtcatctctgaccaacctgtgagtcaccacaacgtacccacacatcaccaccaccaaatca |
1820674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0127 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: scaffold0127
Description:
Target: scaffold0127; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 320 - 423
Target Start/End: Original strand, 21747 - 21850
Alignment:
| Q |
320 |
accaccacaaaatcatcaacacaaccataaaccacgtaaatggccgggggaaaatcgccaaagaaaacatgacaaaccgactcctcaaagacgacccacc |
419 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
21747 |
accaccacaaaatcaccaacacaaccataaaccacgtaaatggccggggaaaaatcgccaaagaaaacatgacaaaccaactcctcaaagacgacccacc |
21846 |
T |
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| Q |
420 |
acag |
423 |
Q |
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|||| |
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| T |
21847 |
acag |
21850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 147 - 242
Target Start/End: Original strand, 31503755 - 31503849
Alignment:
| Q |
147 |
attatccacgaccaccccatccagaccacaccactaccgccaccataaatcaccactcaatctaacacctgcacttcctcccccaaccatctcgca |
242 |
Q |
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| T |
31503755 |
attatccacgaccaccccttcca-accacgccactacaattaccataaaccaccactcaaacttacacctccactatctcccctaaccatctcgca |
31503849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 145 - 179
Target Start/End: Original strand, 823935 - 823969
Alignment:
| Q |
145 |
aaattatccacgaccaccccatccagaccacacca |
179 |
Q |
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| T |
823935 |
aaattatccacgaccaccccatccaaaccacacca |
823969 |
T |
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