View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2631_high_6 (Length: 391)
Name: NF2631_high_6
Description: NF2631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2631_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 367; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 6 - 376
Target Start/End: Original strand, 2214642 - 2215012
Alignment:
| Q |
6 |
aggagcagagagttgaatacacttttctttgaacagtctgtctgatccctatctttattttaaaaacttttcagctattgaagacatttccaaatgcaac |
105 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2214642 |
aggatcagagagttgaatacacttttctttgaacagtctgtctgatccctatctttattttaaaaacttttcagctattgaagacatttccaaatgcaac |
2214741 |
T |
|
| Q |
106 |
caaatatctcaagagtaagtgttttttattatcttctttctttgctaaaatacatgtgctttagagagaagcaatgacttttatgtttctatacagcaat |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2214742 |
caaatatctcaagagtaagtgttttttattatcttctttctttgctaaaatacatgtgctttagagagaagcaatgacttttatgtttctatacagcaat |
2214841 |
T |
|
| Q |
206 |
tgtgagcttcggaaaggttacccctgaacaaaagcaagaagttgaaaagttcggacgggcaatatattcatggactgaatttttacaattggtgagttat |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2214842 |
tgtgagcttcggaaaggttacccctgaacaaaagcaagaagttgaaaagttcggacgggcaatatattcatggactgaatttttacaattggtgagttat |
2214941 |
T |
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| Q |
306 |
tcatttcatgtattattactcgttctactcttacttgaaaattggacatgaaagctgctccatgtataatc |
376 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2214942 |
tcatttcatgtattattactcgttctactcttacttgaaaattggacatgaaagctgctccatgtataatc |
2215012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 28 - 375
Target Start/End: Original strand, 2202069 - 2202418
Alignment:
| Q |
28 |
ttttctttgaacagtctgtctgatccctatctttattttaaaaacttttcagctattgaagacatttccaaatgcaaccaaatatctcaagagtaagtgt |
127 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
2202069 |
ttttctttgaacagtctgtctgatccctatctttattttaaaaacttttcagctattgaagacatttccaaatgcaacaaaatatctcaagagtaagtgt |
2202168 |
T |
|
| Q |
128 |
tttttattatcttctttctttgctaaaatacatgtgctttagagagaagcaatgacttttatgtttctatacagcaattgtgagcttcggaaaggttacc |
227 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2202169 |
tttttattctcttctttctttgctaaaatacatgtgctttagagagaagcaatgacttttatgtttctatacagcaattgtgagcttcggaaaggttacc |
2202268 |
T |
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| Q |
228 |
cctgaacaaaagcaagaagttgaaaagttcggacgggcaatatattcatggactgaatttttacaattggtgagttattcatttcatgtat--tattact |
325 |
Q |
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||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
2202269 |
cctgaacaaaagcaagaagttgaaaagtttggattggcaatatattcatggactgaatttttacaattggtgagttattcatttcatgtgttatattact |
2202368 |
T |
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| Q |
326 |
cgttctactcttacttgaaaattggacatgaaagctgctccatgtataat |
375 |
Q |
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| T |
2202369 |
ctttctactcttacttgtaaattggacatgaaagctgctccttgtataat |
2202418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 69 - 125
Target Start/End: Complemental strand, 41931884 - 41931828
Alignment:
| Q |
69 |
aaacttttcagctattgaagacatttccaaatgcaaccaaatatctcaagagtaagt |
125 |
Q |
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||||||||||||||||||||||||||||||| ||| | | |||||||||||||||| |
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| T |
41931884 |
aaacttttcagctattgaagacatttccaaaggcagcagagtatctcaagagtaagt |
41931828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 306
Target Start/End: Complemental strand, 41931743 - 41931637
Alignment:
| Q |
200 |
agcaattgtgagcttcggaaaggttacccctgaacaaaagcaagaagttgaaaagttcggacgggcaatatattcatggactgaatttttacaattggtg |
299 |
Q |
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||||||||||||||| ||||| ||| | |||||||||||||||||||| ||||| || | ||||||||||||| |||||||||| || ||||| |
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| T |
41931743 |
agcaattgtgagctttggaaaagtttctgaagaacaaaagcaagaagttgagaagttgggggtgaaaatatattcatgggatgaatttttagaagtggtg |
41931644 |
T |
|
| Q |
300 |
agttatt |
306 |
Q |
| |
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|||||| |
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| T |
41931643 |
ggttatt |
41931637 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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