View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2631_high_7 (Length: 386)
Name: NF2631_high_7
Description: NF2631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2631_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 168; Significance: 6e-90; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 184 - 359
Target Start/End: Complemental strand, 41133514 - 41133339
Alignment:
| Q |
184 |
atgtattggtgatttaccaagatgtcaaaatttgagggtgttatcgtatctgatcaattgcttcaaagccagtttacacaggttgaacttcgcagcctta |
283 |
Q |
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| T |
41133514 |
atgtattggtgatttaccaagatgtcaaaatttgagggtgttattgtatctgatcaattgcttcaaagccagtttacacaggttgaacttcgcagcctta |
41133415 |
T |
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| Q |
284 |
aatcaaaagtaagttcttttctttctttccttatacaaaggaccttttggtccaatttcatgttttgtatgtgtta |
359 |
Q |
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| T |
41133414 |
aatcaaaagtaagttcttttctttctttccttatacaaaggacattttggtccaatttcatgttttgtatgtgtta |
41133339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 20 - 125
Target Start/End: Complemental strand, 41133678 - 41133573
Alignment:
| Q |
20 |
tacacgacctaaaaccacttctagatttggtcctttatgtttttggcattagtttgttgagtacttcacattaccacattgttgttattcctttatctgc |
119 |
Q |
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| T |
41133678 |
tacacgacctaaaaccacttctagatttggtcctttatgtttttggcattagtttgttgagtacttcacattaccacattgttgttattcctttttctgc |
41133579 |
T |
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| Q |
120 |
aaatac |
125 |
Q |
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| T |
41133578 |
aaatac |
41133573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 295
Target Start/End: Original strand, 18575419 - 18575471
Alignment:
| Q |
243 |
gcttcaaagccagtttacacaggttgaacttcgcagccttaaatcaaaagtaa |
295 |
Q |
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| T |
18575419 |
gcttcaaaaccagtttacacaagttgagcttcgcagcttaaaatcacaagtaa |
18575471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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