View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2631_low_1 (Length: 637)
Name: NF2631_low_1
Description: NF2631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2631_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 178; Significance: 1e-95; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 18 - 199
Target Start/End: Complemental strand, 44093414 - 44093233
Alignment:
| Q |
18 |
atccccaatgtggccatgtagacggacaaaacgagcagatttcacatttgaaggataccgctggcagccagaaaattgtgatgtgccagagtttgtttga |
117 |
Q |
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| T |
44093414 |
atccccaatgtggccatgtagacggacaaaacgagcagatttcacatttgaaggataccgctggcagccagaaaattgtgatgtgccagagtttgtttga |
44093315 |
T |
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| Q |
118 |
cccatctgggttcttgaggaagtaggtataatcctttgttcttcatttaatcatgtatgtagttgttacgtttattcactga |
199 |
Q |
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| T |
44093314 |
cgcatctgggttcttgaggaagtaggtataatcctttgttcttcatttaatcatgtatgtagttgttacgtttattcactga |
44093233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 170; E-Value: 6e-91
Query Start/End: Original strand, 429 - 623
Target Start/End: Complemental strand, 44093203 - 44093005
Alignment:
| Q |
429 |
agtatgcatgacaaaacaattgcattcattgggtagacaacagtttcaatctatgatgtgtatggtcactggtggacttgagaggccagaagttgaaaat |
528 |
Q |
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| T |
44093203 |
agtatgcatgacaaaacaattgcattcgttgggtagacaacagtttcaatctatgatgtgtatggtcactggtggacttgagaggccagaagttgaaaat |
44093104 |
T |
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| Q |
529 |
gttggatggtaatatggtcttgtaaaagcacgtggagctattattcctgacg----gatgggcttaccgatttccaaaaaccaatacgaccatcttata |
623 |
Q |
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| T |
44093103 |
gttggatggtaatatggtcttgtaaaagcacgtggagctattattcctgacggatcgatgggcttacagatttccaaaaaccaatatgaccatcttata |
44093005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 7e-20; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 452 - 630
Target Start/End: Complemental strand, 39278738 - 39278560
Alignment:
| Q |
452 |
attcattgggtagacaacagtttcaatctatgatgtgtatggtcactggtggacttgagaggccagaagttgaaaatgttggatggtaatatggtcttgt |
551 |
Q |
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| T |
39278738 |
attcattgggccgtcaacaatttcaatctctgatgtgtatggccactggtggagaagagagtccagaagttcaaaatgtgggatgggagtatgatcttgt |
39278639 |
T |
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| Q |
552 |
aaaagcacgtggagctattattcctgacggatgggcttaccgatttccaaaaaccaatacgaccatcttatattcttgg |
630 |
Q |
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| T |
39278638 |
aaaacaccgcggagctatacgtcctgatggctgggcttacaggtttaccaagactaataccaccatcttatattattgg |
39278560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 23 - 154
Target Start/End: Complemental strand, 39279169 - 39279042
Alignment:
| Q |
23 |
caatgtggccatgtagacggacaaaacgagcagatttcacatttgaaggataccgctggcagccagaaaattgtgatgtgccagagtttgtttgacccat |
122 |
Q |
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| T |
39279169 |
caatgtggtcatgtagaatgacacaacgaccaaatttttcatttgagggataccgctggcagccaaagaattgtgatatgcaaga----gtttgaccgat |
39279074 |
T |
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| Q |
123 |
ctgggttcttgaggaagtaggtataatccttt |
154 |
Q |
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| T |
39279073 |
ctaagttcttgagaaagtaggtataattcttt |
39279042 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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