View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2631_low_11 (Length: 346)
Name: NF2631_low_11
Description: NF2631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2631_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 273; Significance: 1e-152; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 20 - 337
Target Start/End: Complemental strand, 27079882 - 27079565
Alignment:
| Q |
20 |
aaccgacagtttcaaagggtatgctaaaggtgctgatgcggatcataaggtaacattcaaaggttatggtgttaataacacgtttaaggattacgataaa |
119 |
Q |
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| T |
27079882 |
aaccgacagtttcaaagggtatgctaaaggtgctgatgcggatcataagataacattcaaaggttatggtgttaataacacgtttaaggattacgataaa |
27079783 |
T |
|
| Q |
120 |
aaaggtatttcttttgccggttatactaagaaatcttcttcttcaacaaattctgttagtgaaagtgttagtttggcnnnnnnntgggttcaacctggta |
219 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
27079782 |
aaaggtatttcttttgctggttatactaagaaatcttcttcttcaacaaattctgttagtgaaagtgttagtttggcaaaaaaatgggttcaacctggta |
27079683 |
T |
|
| Q |
220 |
agtttttccgggaaaagatgttgaaacaaggggtggttatgcctatgccggatattaaggataaattaccacaaagatcgtttttaccacgtaccatttt |
319 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||| |
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| T |
27079682 |
agtttttccgagaaaagatgttgaaacaaggggtggttatgcctatgccggatattaaggataaattaccgccaaggtcgtttttaccacgtaccatttt |
27079583 |
T |
|
| Q |
320 |
gaccaaattaccctttgc |
337 |
Q |
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|||||||||||||||||| |
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| T |
27079582 |
gaccaaattaccctttgc |
27079565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 29 - 337
Target Start/End: Complemental strand, 27066156 - 27065848
Alignment:
| Q |
29 |
tttcaaagggtatgctaaaggtgctgatgcggatcataaggtaacattcaaaggtta---tggtgttaataacacgtttaaggattacgataaaaaaggt |
125 |
Q |
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||||||||| |||||||||||||||||| ||||||||||| | || |||| ||| ||| |||||| || ||||||||||| || || |||||| |
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| T |
27066156 |
tttcaaaggctatgctaaaggtgctgatttagatcataaggtttcgtttaaagtttacaatgggaataataatacatttaaggattatgacaagaaaggt |
27066057 |
T |
|
| Q |
126 |
atttcttttgccggttatactaagaaatcttcttcttcaacaaattctgttagtgaaagtgttagtttggcnnnnnnntgggttcaacctggtaagtttt |
225 |
Q |
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| T |
27066056 |
atttcttttgctagttataataaaa---ctactacttcaactaactctctcagtgatagtggtagtttggcaaaaaacatggttcaacctggtaagtttt |
27065960 |
T |
|
| Q |
226 |
tccgggaaaagatgttgaaacaaggggtggttatgcctatgccggatattaaggataaattaccacaaagatcgtttttaccacgtaccattttgaccaa |
325 |
Q |
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||||||| ||||||||||| ||||| |||||||||||||| ||||| | |||||||||||| | ||| |||||||| || ||| ||||||||||||| |
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| T |
27065959 |
tccgggagaagatgttgaaggaagggacagttatgcctatgccagatataagggataaattaccgccaaggtcgtttttgcctcgttccattttgaccaa |
27065860 |
T |
|
| Q |
326 |
attaccctttgc |
337 |
Q |
| |
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||| || ||||| |
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| T |
27065859 |
attgccatttgc |
27065848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 206 - 337
Target Start/End: Complemental strand, 27053537 - 27053406
Alignment:
| Q |
206 |
ggttcaacctggtaagtttttccgggaaaagatgttgaaacaaggggtggttatgcctatgccggatattaaggataaattaccacaaagatcgttttta |
305 |
Q |
| |
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|||| |||| |||||||||||||| |||| ||||||||| ||||| |||||||||||||| |||| | |||||| ||||||| || |||||||| |
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| T |
27053537 |
ggttgaaccaggtaagtttttccgcgaaaggatgttgaaggaagggactgttatgcctatgccagatacaagggataagttaccacctaggtcgtttttg |
27053438 |
T |
|
| Q |
306 |
ccacgtaccattttgaccaaattaccctttgc |
337 |
Q |
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|||||| ||||||||| |||||| |||||||| |
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| T |
27053437 |
ccacgttccattttgatcaaattgccctttgc |
27053406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 204 - 307
Target Start/End: Original strand, 14866057 - 14866160
Alignment:
| Q |
204 |
tgggttcaacctggtaagtttttccgggaaaagatgttgaaacaaggggtggttatgcctatgccggatattaaggataaattaccacaaagatcgtttt |
303 |
Q |
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|||||| | |||||||||||||| | || || ||||||||| |||| ||| ||||||||||| ||||||| ||||||||||| |||| ||||||| |
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| T |
14866057 |
tgggttgagcctggtaagttttttagagagaaaatgttgaaagaaggtacggtaatgcctatgcctgatattagagataaattacctaaaaggtcgtttt |
14866156 |
T |
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| Q |
304 |
tacc |
307 |
Q |
| |
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|||| |
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|
| T |
14866157 |
tacc |
14866160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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