View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2631_low_13 (Length: 306)
Name: NF2631_low_13
Description: NF2631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2631_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 2 - 96
Target Start/End: Original strand, 15324123 - 15324217
Alignment:
| Q |
2 |
aattaattagtaaaagtaaatacatgcatcaaacggtgtggaatagttcgtgtgttgttgtgcatcaaaaatgtcgtgctaagaagcatttctca |
96 |
Q |
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| T |
15324123 |
aattaattagtaaaaggaaatacatgcatccaacggcgttgaatagttcgtgtgttgtcgtgcatcaaaaatgtcgtgctaagaagcatttctca |
15324217 |
T |
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Target: chr8 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 180 - 275
Target Start/End: Original strand, 31499322 - 31499419
Alignment:
| Q |
180 |
ttttttataattaattttcagcaagggaccgtcatatgaaaaatcctaaaaatcatgtcaaaagtcatcctcgacaagccac--ctgaaagtgtttct |
275 |
Q |
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| T |
31499322 |
ttttttatcattaattttcagcaagggaccgtcatatgaaaaatcctaaaaatcattgaaaaagtcatcctcgacaagccacctctgaaagtgtttct |
31499419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 11787864 - 11787960
Alignment:
| Q |
1 |
aaattaattagtaaaagtaaatacatgcatcaaacggtgtggaatagttcgtgtgttgttgtgcatcaaaaatgtcgtgctaagaagcatttctcaa |
97 |
Q |
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| T |
11787864 |
aaattaataagtaaaaggaaatatatgcatccaatggtgtggaatggttcgtgtgttgtcgtgcatatcaattgtcgtgccaagaagcatttctcaa |
11787960 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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