View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2631_low_16 (Length: 253)
Name: NF2631_low_16
Description: NF2631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2631_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-135; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 6 - 252
Target Start/End: Original strand, 47712866 - 47713112
Alignment:
| Q |
6 |
aggagcagagaagcgatagacttcatatctaatattacaacttggtttgacaactctacaaccaatcttgttataacagtaaattggaatttctgatata |
105 |
Q |
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| T |
47712866 |
aggatcagagaagcgatagacttcatatctaatattacaacttggtttgacaactctacaaccaatcttgttataacagtaaattggaatttctgatata |
47712965 |
T |
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| Q |
106 |
gcaaactctaaacaatcattgcaatcttgctctgacaaatcaggtgtacactgcacaagaccatatatggtttgaaaattcaaattcacatcagttgcat |
205 |
Q |
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| T |
47712966 |
gcaaactctaaacaatcattgcaatcttgctctgacaaatcaggtgtacactgcacaagaccatatatggtttgaaaattcaaattcacatcagttgcat |
47713065 |
T |
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| Q |
206 |
tatccgcagcaaacttaagacgagaatcacttgatgcagctatttct |
252 |
Q |
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| T |
47713066 |
tatccgcagcaaacttaagacgagaatcacttgatgcagctatttct |
47713112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 27 - 246
Target Start/End: Original strand, 47759802 - 47760021
Alignment:
| Q |
27 |
ttcatatctaatattacaacttggtttgacaactctacaaccaatcttgttataacagtaaattggaatttctgatatagcaaactctaaacaatcattg |
126 |
Q |
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| T |
47759802 |
ttcatatctgatattacaacttggtttgagaactctaccaccaatcttgttattacaacaacttggaatatctgagatagcaccatctaaacaattattg |
47759901 |
T |
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| Q |
127 |
caatcttgctctgacaaatcaggtgtacactgcacaagaccatatatggtttgaaaattcaaattcacatcagttgcattatccgcagcaaacttaagac |
226 |
Q |
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| T |
47759902 |
caatcttgctctgacaaatcaggtgtgcactgaacaagaccatatatggtttgaaaattcaaatttacatcagttgcattatctgtagcaaatttacgac |
47760001 |
T |
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| Q |
227 |
gagaatcacttgatgcagct |
246 |
Q |
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| T |
47760002 |
gagaatcacttgatgcagct |
47760021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 27 - 251
Target Start/End: Original strand, 47745479 - 47745694
Alignment:
| Q |
27 |
ttcatatctaatattacaacttggtttgacaactctacaaccaatcttgttataacagtaaattggaatttctgatatagcaaactctaaacaatcattg |
126 |
Q |
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|||||||||||||||||||||| |||||| |||||||| |||||||||||||||| | || ||||| ||||||| |||||| |||||||||||||||| |
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| T |
47745479 |
ttcatatctaatattacaacttagtttgagaactctaccaccaatcttgttataaaaaaaacttggagtttctgaaatagcacgctctaaacaatcattg |
47745578 |
T |
|
| Q |
127 |
caatcttgctctgacaaatcaggtgtacactgcacaagaccatatatggtttgaaaattcaaattcacatcagttgcattatccgcagcaaacttaagac |
226 |
Q |
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|||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||||| | | |||||||||| ||| |
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| T |
47745579 |
caatcttgtcctgacaagtcaggtgtacactgcacaagaccatatatggtttcaaaattcaa---------agttgcattagcggtagcaaacttacgac |
47745669 |
T |
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| Q |
227 |
gagaatcacttgatgcagctatttc |
251 |
Q |
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| T |
47745670 |
gagaatcacctgatgcagctatttc |
47745694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 21 - 253
Target Start/End: Original strand, 47717684 - 47717907
Alignment:
| Q |
21 |
atagacttcatatctaatattacaacttggtttgacaactctacaaccaatcttgttataacagtaaattggaatttctgatatagcaaactctaaacaa |
120 |
Q |
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||||| ||||| ||||||||| ||||||||||||| |||| ||| |||| |||||||| | | ||||| ||||||||||| |||||| |||||||||| |
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| T |
47717684 |
atagatttcatgtctaatattgcaacttggtttgagaactataccgccaaccttgttattaaaataaataggaatttctgaaatagcacgctctaaacaa |
47717783 |
T |
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| Q |
121 |
tcattgcaatcttgctctgacaaatcaggtgtacactgcacaagaccatatatggtttgaaaattcaaattcacatcagttgcattatccgcagcaaact |
220 |
Q |
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|||||||||||||||| ||| |||||||||||||||||||||||||||||| |||||| ||||||||| |||||||||| | | |||||||| |
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| T |
47717784 |
tcattgcaatcttgctgtgataaatcaggtgtacactgcacaagaccatatgtggtttcaaaattcaa---------agttgcattagcggtagcaaact |
47717874 |
T |
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| Q |
221 |
taagacgagaatcacttgatgcagctatttctt |
253 |
Q |
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|| ||||||||||||||||||| |||||||||| |
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| T |
47717875 |
tacgacgagaatcacttgatgctgctatttctt |
47717907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 27 - 79
Target Start/End: Original strand, 47704889 - 47704941
Alignment:
| Q |
27 |
ttcatatctaatattacaacttggtttgacaactctacaaccaatcttgttat |
79 |
Q |
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| T |
47704889 |
ttcatatctaatattgcaacttggtttgataactcttccaccaatcttgttat |
47704941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 139 - 180
Target Start/End: Complemental strand, 47811779 - 47811738
Alignment:
| Q |
139 |
gacaaatcaggtgtacactgcacaagaccatatatggtttga |
180 |
Q |
| |
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|||||||||||||||||||| |||||||||| ||| |||||| |
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| T |
47811779 |
gacaaatcaggtgtacactgaacaagaccatttattgtttga |
47811738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 179
Target Start/End: Complemental strand, 6522027 - 6521987
Alignment:
| Q |
139 |
gacaaatcaggtgtacactgcacaagaccatatatggtttg |
179 |
Q |
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|||||||||||||| || || |||||||||||||||||||| |
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| T |
6522027 |
gacaaatcaggtgtgcattgaacaagaccatatatggtttg |
6521987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 27 - 72
Target Start/End: Original strand, 28830931 - 28830976
Alignment:
| Q |
27 |
ttcatatctaatattacaacttggtttgacaactctacaaccaatc |
72 |
Q |
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||||||||||||||||||||||||||| | ||||||| ||||||| |
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| T |
28830931 |
ttcatatctaatattacaacttggtttcataactctagcaccaatc |
28830976 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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