View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2631_low_17 (Length: 247)

Name: NF2631_low_17
Description: NF2631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2631_low_17
NF2631_low_17
[»] chr8 (14 HSPs)
chr8 (1-90)||(42797711-42797800)
chr8 (3-121)||(7258359-7258478)
chr8 (3-123)||(42412373-42412494)
chr8 (1-97)||(27868342-27868438)
chr8 (3-73)||(2195464-2195534)
chr8 (1-73)||(8418343-8418415)
chr8 (5-193)||(15559055-15559239)
chr8 (58-120)||(27875135-27875198)
chr8 (3-73)||(2875127-2875197)
chr8 (4-74)||(27987655-27987725)
chr8 (4-74)||(28044957-28045027)
chr8 (6-72)||(44615407-44615473)
chr8 (6-138)||(28802766-28802899)
chr8 (4-68)||(44225967-44226031)
[»] chr5 (11 HSPs)
chr5 (1-138)||(6172956-6173094)
chr5 (1-74)||(39212592-39212665)
chr5 (6-93)||(858334-858421)
chr5 (1-73)||(5072944-5073016)
chr5 (6-82)||(7179513-7179589)
chr5 (1-68)||(39183674-39183741)
chr5 (25-126)||(7311168-7311270)
chr5 (6-68)||(17243001-17243063)
chr5 (4-65)||(15254762-15254823)
chr5 (1-74)||(42158687-42158760)
chr5 (1-73)||(15898185-15898257)
[»] chr2 (18 HSPs)
chr2 (1-137)||(26273753-26273890)
chr2 (1-95)||(3487388-3487482)
chr2 (3-97)||(4794569-4794663)
chr2 (1-138)||(44424240-44424376)
chr2 (6-68)||(23684958-23685020)
chr2 (6-68)||(28301433-28301495)
chr2 (1-121)||(6213842-6213963)
chr2 (1-73)||(7931537-7931609)
chr2 (3-163)||(10069539-10069696)
chr2 (42-129)||(43056410-43056498)
chr2 (3-74)||(19515877-19515948)
chr2 (3-50)||(44736715-44736762)
chr2 (1-47)||(5007609-5007655)
chr2 (3-73)||(43427127-43427197)
chr2 (2-138)||(2756669-2756806)
chr2 (4-73)||(3199895-3199964)
chr2 (1-74)||(14384318-14384391)
chr2 (1-97)||(44024712-44024808)
[»] chr4 (14 HSPs)
chr4 (4-123)||(49448838-49448958)
chr4 (6-138)||(12619687-12619819)
chr4 (6-123)||(37309697-37309815)
chr4 (3-200)||(22872303-22872499)
chr4 (1-97)||(38160169-38160265)
chr4 (1-68)||(17237037-17237104)
chr4 (3-73)||(38319907-38319977)
chr4 (55-123)||(4727569-4727637)
chr4 (1-97)||(40020965-40021061)
chr4 (1-73)||(55360389-55360461)
chr4 (6-73)||(35998158-35998225)
chr4 (6-72)||(3686010-3686076)
chr4 (6-50)||(42185860-42185904)
chr4 (4-68)||(47846896-47846960)
[»] chr3 (8 HSPs)
chr3 (1-74)||(3862212-3862285)
chr3 (3-73)||(39329791-39329861)
chr3 (1-138)||(45241005-45241143)
chr3 (6-73)||(9218144-9218211)
chr3 (4-74)||(27668367-27668437)
chr3 (6-72)||(32023143-32023209)
chr3 (3-73)||(46194247-46194317)
chr3 (15-118)||(46627920-46628024)
[»] chr1 (17 HSPs)
chr1 (4-124)||(40061806-40061927)
chr1 (3-125)||(27831841-27831965)
chr1 (7-123)||(3718840-3718957)
chr1 (4-74)||(10587622-10587692)
chr1 (3-73)||(29225749-29225819)
chr1 (6-90)||(32587764-32587848)
chr1 (1-73)||(33149267-33149339)
chr1 (1-73)||(39420578-39420650)
chr1 (1-73)||(52382428-52382500)
chr1 (5-124)||(34877081-34877200)
chr1 (1-123)||(40019753-40019876)
chr1 (3-73)||(2886167-2886237)
chr1 (6-68)||(7785321-7785383)
chr1 (6-68)||(8327716-8327778)
chr1 (5-74)||(17342826-17342895)
chr1 (137-201)||(4466071-4466135)
chr1 (1-73)||(37925288-37925360)
[»] chr7 (11 HSPs)
chr7 (4-73)||(25778741-25778810)
chr7 (1-73)||(30462654-30462726)
chr7 (3-74)||(14648959-14649030)
chr7 (3-73)||(34064211-34064281)
chr7 (4-125)||(37264310-37264432)
chr7 (3-73)||(37496438-37496508)
chr7 (4-73)||(9602858-9602927)
chr7 (4-73)||(9830429-9830498)
chr7 (7-76)||(25940787-25940856)
chr7 (1-73)||(2849249-2849321)
chr7 (1-119)||(19687952-19688072)
[»] scaffold0685 (1 HSPs)
scaffold0685 (1-73)||(6441-6513)
[»] chr6 (3 HSPs)
chr6 (10-90)||(7739542-7739622)
chr6 (1-68)||(34803753-34803820)
chr6 (1-73)||(28538990-28539062)
[»] scaffold0578 (1 HSPs)
scaffold0578 (1-47)||(4023-4069)


Alignment Details
Target: chr8 (Bit Score: 86; Significance: 3e-41; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 42797800 - 42797711
Alignment:
Q  1 ttcaattataactctaattaaaactactatcatcgctctcgattcaatatcttttaatttgcatttataataatagtaaatgtatcaata 90  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  42797800 ttcaattataactctaattaaaactactatcatcgctctcgattcaatatcttttaatttgcatttatgataatagtaaatgtatcaata 42797711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 3 - 121
Target Start/End: Complemental strand, 7258478 - 7258359
Alignment:
Q  3 caattataactctaattaaaactactatcatcgctctcgattcaatatcttttaatttgcatttataataatagtaaatgtatcaatatttgacatgagc 102  Q
    ||||||||||||||||||| |||||| ||||| ||| | ||||||||| || || ||||||||||| |||||  |||||| | ||||| |||||| ||||    
T  7258478 caattataactctaattaatactactttcatcactcccaattcaatatattctagtttgcatttatgataatgataaatgcaccaatacttgacaagagc 7258379  T
Q  103 aattaaaa-catttttctct 121  Q
      |||||| |||||||||||    
T  7258378 gcttaaaaccatttttctct 7258359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 123
Target Start/End: Complemental strand, 42412494 - 42412373
Alignment:
Q  3 caattataactctaattaaaactactatcatcgctctcgattcaatatcttttaatttgcatttataataatagtaaatgtatcaatatttgacatgagc 102  Q
    |||||||| |||||||||| |||||| ||||| ||| | ||||||||| ||  | ||||||||||| ||||| |  |||| | |||||| ||||| ||||    
T  42412494 caattatagctctaattaatactactttcatcactcccaattcaatatattccactttgcatttatgataatggagaatgcaccaatatatgacaagagc 42412395  T
Q  103 aattaaaac-atttttctctct 123  Q
    | ||||||| ||||||||||||    
T  42412394 acttaaaactatttttctctct 42412373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 27868438 - 27868342
Alignment:
Q  1 ttcaattataactctaattaaaactactatcatcgctctcgattcaatatcttttaatttgcatttataataatagtaaatgtatcaatatttgaca 97  Q
    ||||||||||| | ||||||| |||||| |||||  |||| ||||||||| || || ||||||||||| |||||  |||||| ||||||| ||||||    
T  27868438 ttcaattataattttaattaatactactttcatcattctcaattcaatatattctactttgcatttatgataatgataaatggatcaatacttgaca 27868342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 3 - 73
Target Start/End: Original strand, 2195464 - 2195534
Alignment:
Q  3 caattataactctaattaaaactactatcatcgctctcgattcaatatcttttaatttgcatttataataa 73  Q
    ||||||||||||||||||| |||||| ||||| ||| | ||||||||| || || ||||||||||| ||||    
T  2195464 caattataactctaattaatactactttcatcactcccaattcaatatattctactttgcatttatgataa 2195534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 8418415 - 8418343
Alignment:
Q  1 ttcaattataactctaattaaaactactatcatcgctctcgattcaatatcttttaatttgcatttataataa 73  Q
    ||||||||||||||||||||| |||||| ||||| ||||| ||||| ||| || || ||| ||||||| ||||    
T  8418415 ttcaattataactctaattaatactactttcatcactctcaattcagtatattctactttacatttatgataa 8418343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 193
Target Start/End: Complemental strand, 15559239 - 15559055
Alignment:
Q  5 attataactctaattaaaactactatcatcgctctcgattcaatatcttttaatttgcatttataataatagtaaatgtatcaatatttgacatgagcaa 104  Q
    ||||||||||||||||| || ||| ||||| |||   ||||||||| || || ||||||||||| ||||| ||||||  | ||||| |||||| || ||     
T  15559239 attataactctaattaataccactttcatcactcctaattcaatatattctactttgcatttatgataatggtaaatacaccaatacttgacaagaacac 15559140  T
Q  105 ttaaaa-catttttctctctttttcaatgatacatatatttttctttattagtgtgaaataaataaactgctcacttaaattaggacgga 193  Q
    |||||| ||||||| |||||  |||| | ||||    ||||||||| || | |||| ||| || ||| |||||||||||||| |||||||    
T  15559139 ttaaaatcatttttgtctctccttcactaatac----atttttcttaataaatgtg-aatgaacaaaatgctcacttaaattgggacgga 15559055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 120
Target Start/End: Complemental strand, 27875198 - 27875135
Alignment:
Q  58 tttgcatttataataatagtaaatgtatcaatatttgacatgagcaattaaaa-catttttctc 120  Q
    ||||||||||| ||||||||||||| ||||||| |||||| || || |||||| ||||||||||    
T  27875198 tttgcatttatgataatagtaaatggatcaatacttgacaagaacatttaaaaccatttttctc 27875135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 73
Target Start/End: Complemental strand, 2875197 - 2875127
Alignment:
Q  3 caattataactctaattaaaactactatcatcgctctcgattcaatatcttttaatttgcatttataataa 73  Q
    ||||||||||||||||||| |||||| ||||  ||||  ||||||||| || || ||||||||||| ||||    
T  2875197 caattataactctaattaatactactttcattcctctaaattcaatatattctactttgcatttatgataa 2875127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 74
Target Start/End: Original strand, 27987655 - 27987725
Alignment:
Q  4 aattataactctaattaaaactactatcatcgctctcgattcaatatcttttaatttgcatttataataat 74  Q
    |||||||||| ||||||| |||||| ||||| ||| | ||||||||| ||| | ||||||||||| |||||    
T  27987655 aattataactataattaatactactttcatcactcacaattcaatatatttcattttgcatttatgataat 27987725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 74
Target Start/End: Original strand, 28044957 - 28045027
Alignment:
Q  4 aattataactctaattaaaactactatcatcgctctcgattcaatatcttttaatttgcatttataataat 74  Q
    |||||||||| ||||||| |||||| ||||| ||| | ||||||||| ||| | ||||||||||| |||||    
T  28044957 aattataactataattaatactactttcatcactcacaattcaatatatttcattttgcatttatgataat 28045027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 72
Target Start/End: Complemental strand, 44615473 - 44615407
Alignment:
Q  6 ttataactctaattaaaactactatcatcgctctcgattcaatatcttttaatttgcatttataata 72  Q
    |||||||||||||||| | || | ||||| ||||| ||||||||| || || |||||||||||||||    
T  44615473 ttataactctaattaatattattttcatcactctcaattcaatatattctactttgcatttataata 44615407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 138
Target Start/End: Original strand, 28802766 - 28802899
Alignment:
Q  6 ttataactctaattaaaactactatcatcgctctcgattcaatatcttttaatttgcatttataataatagtaaatgtatcaatatttgacatgagcaat 105  Q
    |||||||||||||||| | || | ||||| ||||| ||||||||| ||  | ||||||||||| ||| | |  |||  ||||||| || ||| ||||| |    
T  28802766 ttataactctaattaataatattttcatcactctcaattcaatatattccactttgcatttatgatagtggagaatagatcaatacttaacaagagcact 28802865  T
Q  106 taaaa-catttttctctctttttcaatgatacat 138  Q
    ||||| ||||||||||||| ||||| | ||||||    
T  28802866 taaaaccatttttctctctctttcatttatacat 28802899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 68
Target Start/End: Complemental strand, 44226031 - 44225967
Alignment:
Q  4 aattataactctaattaaaactactatcatcgctctcgattcaatatcttttaatttgcatttat 68  Q
    |||||||||||||||||| | || | ||||||||||| ||| ||||| || || |||||||||||    
T  44226031 aattataactctaattaatattattttcatcgctctctatttaatatattctactttgcatttat 44225967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 6173094 - 6172956
Alignment:
Q  1 ttcaattataactctaattaaaactactatcatcgctctcgattcaatatcttttaatttgcatttataataatagtaaatgtatcaatatttgacatga 100  Q
    ||||||||||||| ||||||| |||||| ||||| ||| | ||||||||| || || ||||||||||| ||||| ||||||| || ||||||||| | ||    
T  6173094 ttcaattataactataattaatactactttcatcactcacaattcaatatattatactttgcatttatgataatggtaaatgcattaatatttgataaga 6172995  T
Q  101 gcaattaaaac-atttttctctctttttcaatgatacat 138  Q
    ||| ||||||| |||||| |||||| |||| | ||||||    
T  6172994 gcacttaaaactatttttatctcttcttcactaatacat 6172956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 39212665 - 39212592
Alignment:
Q  1 ttcaattataactctaattaaaactactatcatcgctctcgattcaatatcttttaatttgcatttataataat 74  Q
    ||||||||||||||||||||| |||||| ||||||||| | ||||||||| || || ||||||||||| |||||    
T  39212665 ttcaattataactctaattaatactactttcatcgctcccaattcaatatattctactttgcatttatgataat 39212592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 93
Target Start/End: Original strand, 858334 - 858421
Alignment:
Q  6 ttataactctaattaaaactactatcatcgctctcgattcaatatcttttaatttgcatttataataatagtaaatgtatcaatattt 93  Q
    |||||||||||||||| |||||| ||||| ||||| ||| ||||| ||| | ||||||||||| ||||| |  |||||| ||||||||    
T  858334 ttataactctaattaatactactttcatcactctcaattaaatatatttcattttgcatttatgataatggagaatgtaccaatattt 858421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 5072944 - 5073016
Alignment:
Q  1 ttcaattataactctaattaaaactactatcatcgctctcgattcaatatcttttaatttgcatttataataa 73  Q
    ||||||||||||||||||||| ||||||  ||| |||| | ||||||||| ||||| ||| ||||||| ||||    
T  5072944 ttcaattataactctaattaatactacttccattgctcccaattcaatatattttactttacatttatgataa 5073016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 82
Target Start/End: Complemental strand, 7179589 - 7179513
Alignment:
Q  6 ttataactctaattaaaactactatcatcgctctcgattcaatatcttttaatttgcatttataataatagtaaatg 82  Q
    ||||||||||||||||  ||||| |||||  |||| ||||||||| || || |||||||||||| |||| |||||||    
T  7179589 ttataactctaattaatgctactctcatcattctcaattcaatatattctactttgcatttatattaatggtaaatg 7179513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 39183741 - 39183674
Alignment:
Q  1 ttcaattataactctaattaaaactactatcatcgctctcgattcaatatcttttaatttgcatttat 68  Q
    ||||||||||||||||||||| | |||| ||||| ||||| ||||||||| ||  | |||||||||||    
T  39183741 ttcaattataactctaattaatattactttcatcactctcaattcaatatattccactttgcatttat 39183674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 126
Target Start/End: Complemental strand, 7311270 - 7311168
Alignment:
Q  25 tactatcatcgctctcgattcaatatcttttaatttgcatttataataatagtaaatgtatcaatatttgacatgagcaattaaaa-catttttctctct 123  Q
    |||| ||||| ||||  ||||||||| || || ||||||||||| ||||| ||||||| |  |||| |||| | ||||| |||||| |||||||||||||    
T  7311270 tactttcatcactcttaattcaatatattctactttgcatttatgataatggtaaatgcacaaatacttgataagagcacttaaaaccatttttctctct 7311171  T
Q  124 ttt 126  Q
    |||    
T  7311170 ttt 7311168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 68
Target Start/End: Complemental strand, 17243063 - 17243001
Alignment:
Q  6 ttataactctaattaaaactactatcatcgctctcgattcaatatcttttaatttgcatttat 68  Q
    |||||||||||||||| |||||| ||||| ||||| ||||||||| ||  | |||||||||||    
T  17243063 ttataactctaattaatactactttcatcactctcaattcaatatattccactttgcatttat 17243001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 65
Target Start/End: Original strand, 15254762 - 15254823
Alignment:
Q  4 aattataactctaattaaaactactatcatcgctctcgattcaatatcttttaatttgcatt 65  Q
    |||||||||||||||||| | |||| ||||| || || ||||||||| || |||||||||||    
T  15254762 aattataactctaattaatattactttcatcactttcaattcaatatattctaatttgcatt 15254823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 42158760 - 42158687
Alignment:
Q  1 ttcaattataactctaattaaaactactatcatcgctctcgattcaatatcttttaatttgcatttataataat 74  Q
    |||||| |||||||||||||| | |||| |||||  |||| |||||| || ||||| ||||||||||| |||||    
T  42158760 ttcaatcataactctaattaatattactttcatctttctcaattcaacatattttactttgcatttatgataat 42158687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 15898185 - 15898257
Alignment:
Q  1 ttcaattataactctaattaaaactactatcatcgctctcgattcaatatcttttaatttgcatttataataa 73  Q
    |||||||||||| |||||||| | |||| ||| | ||||| ||||||||| || || ||||||||||| ||||    
T  15898185 ttcaattataacactaattaatattactttcaccactctcaattcaatatattctactttgcatttatgataa 15898257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 26273753 - 26273890
Alignment:
Q  1 ttcaattataactctaattaaaactactatcatcgctctcgattcaatatcttttaatttgcatttataataatagtaaatgtatcaatatttgacatga 100  Q
    ||||||||||| | ||||||| |||||| ||||| ||| | ||||||||| || || ||||||||||| |||||  ||||||||||||||||| | | ||    
T  26273753 ttcaattataaatttaattaatactactttcatcactcccaattcaatatattctactttgcatttatgataatgataaatgtatcaatatttaaaaaga 26273852  T
Q  101 gcaattaaaa-catttttctctctttttcaatgataca 137  Q
    ||||||||||  |||||| |||||| |||| |||||||    
T  26273853 gcaattaaaattatttttatctcttcttcattgataca 26273890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 3487388 - 3487482
Alignment:
Q  1 ttcaattataactctaattaaaactactatcatcgctctcgattcaatatcttttaatttgcatttataataatagtaaatgtatcaatatttga 95  Q
    ||||||||| ||||||||||| | |||| ||||| ||||| ||||||||| || || ||||||||| ||||||| ||||||| ||||||| ||||    
T  3487388 ttcaattattactctaattaatattactttcatcactctcaattcaatatattctactttgcatttgtaataatggtaaatgcatcaatacttga 3487482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 97
Target Start/End: Original strand, 4794569 - 4794663
Alignment:
Q  3 caattataactctaattaaaactactatcatcgctctcgattcaatatcttttaatttgcatttataataatagtaaatgtatcaatatttgaca 97  Q
    ||||||||||||||||||| |||||| ||||| || || ||||||||| ||  | ||||||||||| ||||||  ||||| ||||||||||||||    
T  4794569 caattataactctaattaatactactttcatcactttcaattcaatatattccactttgcatttatgataataaaaaatgcatcaatatttgaca 4794663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 44424376 - 44424240
Alignment:
Q  1 ttcaattataactctaattaaaactactatcatcgctctcgattcaatatcttttaatttgcatttataataatagtaaatgtatcaatatttgacatga 100  Q
    ||||||||||||||||||||| |||||| |||||  |||| ||||||||| ||  | ||||||||||| ||||||  ||||| ||||||| |||||| ||    
T  44424376 ttcaattataactctaattaatactactttcatcattctcaattcaatatattcaactttgcatttatgataataaaaaatgcatcaatacttgacaaga 44424277  T
Q  101 gcaattaaaacatttttctctctttttcaatgatacat 138  Q
     || | |||||  |||||||||| ||||| | ||||||    
T  44424276 -cattcaaaaccattttctctctctttcacttatacat 44424240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 6 - 68
Target Start/End: Original strand, 23684958 - 23685020
Alignment:
Q  6 ttataactctaattaaaactactatcatcgctctcgattcaatatcttttaatttgcatttat 68  Q
    |||||||||||||||| |||||| ||||| ||||| ||||||||| ||| | |||||||||||    
T  23684958 ttataactctaattaatactactttcatcactctcaattcaatatatttcactttgcatttat 23685020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 6 - 68
Target Start/End: Original strand, 28301433 - 28301495
Alignment:
Q  6 ttataactctaattaaaactactatcatcgctctcgattcaatatcttttaatttgcatttat 68  Q
    |||||||||||||||| |||||| ||||| ||||| ||||||||| ||| | |||||||||||    
T  28301433 ttataactctaattaatactactttcatcactctcaattcaatatatttcactttgcatttat 28301495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 6213963 - 6213842
Alignment:
Q  1 ttcaattataactctaattaaaactactatcatcgctctcgattcaatatcttttaatttgcatttataataatagtaaatgtatcaatatttgacatga 100  Q
    ||||||| ||||| ||||||| |||||| ||||| ||||  ||| ||||| || || ||||||||||| ||||| ||||||| | ||||| |||||  ||    
T  6213963 ttcaattttaactttaattaatactactttcatcactcttaattgaatatattctactttgcatttatgataatggtaaatgaagcaatacttgacgaga 6213864  T
Q  101 gcaattaaaa-catttttctct 121  Q
     || |||||| |||||||||||    
T  6213863 acacttaaaatcatttttctct 6213842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 7931609 - 7931537
Alignment:
Q  1 ttcaattataactctaattaaaactactatcatcgctctcgattcaatatcttttaatttgcatttataataa 73  Q
    ||||||||||||||||||||| |||||| |||   ||||| ||||||||| ||||| ||| ||||||| ||||    
T  7931609 ttcaattataactctaattaatactactttcacaactctcaattcaatatattttactttacatttatgataa 7931537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 163
Target Start/End: Complemental strand, 10069696 - 10069539
Alignment:
Q  3 caattataactctaattaaaactactatcatcgctctcgattcaatatcttttaatttgcatttataataatagtaaatgtatcaatatttgacatgagc 102  Q
    |||| |||||||||||||| | |||| ||||| ||||| ||||||||| ||  | ||||||||||| ||||| ||||||| |  |||| ||||||  ||     
T  10069696 caatgataactctaattaataatactttcatcactctcaattcaatatattcgactttgcatttatgataatggtaaatgcacaaatacttgacaaaagt 10069597  T
Q  103 aattaaaa-catttttctctctttttcaatgatacatatatttttctttattagtgtgaaat 163  Q
    | |||||| ||||||| ||||| ||||| |     ||||||||||||| || ||||||||||    
T  10069596 acttaaaatcatttttatctctctttcact----tatatatttttcttaatgagtgtgaaat 10069539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 129
Target Start/End: Original strand, 43056410 - 43056498
Alignment:
Q  42 attcaatatcttttaatttgcatttataataatagtaaatgtatcaatatttgacatgagcaattaaaac-atttttctctctttttca 129  Q
    ||||||||| || || ||| ||||||| ||||| |||||||||||||||||||| | ||| | ||||||| |||||||| |||| ||||    
T  43056410 attcaatatattatactttacatttatgataatcgtaaatgtatcaatatttgaaaagagtacttaaaacaatttttctttcttcttca 43056498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 74
Target Start/End: Original strand, 19515877 - 19515948
Alignment:
Q  3 caattataactctaattaaaactactatcatcgctctcgattcaatatcttttaatttgcatttataataat 74  Q
    ||||||||||||||||||| |||||| ||||  ||  | ||||||||| ||||| ||||||||||| |||||    
T  19515877 caattataactctaattaatactactttcattacttacaattcaatatattttactttgcatttatgataat 19515948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 50
Target Start/End: Original strand, 44736715 - 44736762
Alignment:
Q  3 caattataactctaattaaaactactatcatcgctctcgattcaatat 50  Q
    ||||||||||||||||||| |||||| | ||| |||||||||||||||    
T  44736715 caattataactctaattaatactacttttatcactctcgattcaatat 44736762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 5007655 - 5007609
Alignment:
Q  1 ttcaattataactctaattaaaactactatcatcgctctcgattcaa 47  Q
    ||||||||||||||||||||| |||||| ||||| ||| ||||||||    
T  5007655 ttcaattataactctaattaatactactttcatcactcccgattcaa 5007609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 73
Target Start/End: Complemental strand, 43427197 - 43427127
Alignment:
Q  3 caattataactctaattaaaactactatcatcgctctcgattcaatatcttttaatttgcatttataataa 73  Q
    |||||||||| |||||||| |||||| ||||| ||| | ||||||||| || || ||||||||||| ||||    
T  43427197 caattataacactaattaatactactttcatcactcccaattcaatatattctattttgcatttatgataa 43427127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 138
Target Start/End: Original strand, 2756669 - 2756806
Alignment:
Q  2 tcaattataactctaattaaaactactatcatcgctctcgattcaatatcttttaatttgcatttataataatagtaaatgtatcaatatttgacatgag 101  Q
    |||||||||||||||||||| |||| |  |||| ||  | ||| ||||| || || ||| ||||||| ||||| ||||||| |  |||| |||||| |||    
T  2756669 tcaattataactctaattaatactatttacatcacttccaatttaatatattctactttacatttatgataatggtaaatgcactaatacttgacaagag 2756768  T
Q  102 caattaaaa-catttttctctctttttcaatgatacat 138  Q
    || ||||||  ||||||||||||| |||| | ||||||    
T  2756769 cacttaaaataatttttctctcttcttcattaatacat 2756806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 73
Target Start/End: Original strand, 3199895 - 3199964
Alignment:
Q  4 aattataactctaattaaaactactatcatcgctctcgattcaatatcttttaatttgcatttataataa 73  Q
    |||||||||||||||||| |||||| ||| | ||| | ||||||||| || || ||||||||||| ||||    
T  3199895 aattataactctaattaatactactttcaccactcccaattcaatatattatactttgcatttatgataa 3199964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 14384391 - 14384318
Alignment:
Q  1 ttcaattataactctaattaaaactactatcatcgctctcgattcaatatcttttaatttgcatttataataat 74  Q
    ||||||||||| ||||||||| |||||| || || ||||| ||||||||| || || ||| ||||||| |||||    
T  14384391 ttcaattataattctaattaatactactttcttcactctcaattcaatatattatactttacatttatgataat 14384318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 44024712 - 44024808
Alignment:
Q  1 ttcaattataactctaattaaaactactatcatcgctctcgattcaatatcttttaatttgcatttataataatagtaaatgtatcaatatttgaca 97  Q
    ||||||||||||| ||||||| |||| | |||||  |||  | ||||||| || || ||||||||||| |||||   ||||| ||||||||||||||    
T  44024712 ttcaattataactataattaatactattttcatcattcttaactcaatatattctactttgcatttatgataatgagaaatgcatcaatatttgaca 44024808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 4 - 123
Target Start/End: Original strand, 49448838 - 49448958
Alignment:
Q  4 aattataactctaattaaaactactatcatcgctctcgattcaatatcttttaatttgcatttataataatagtaaatgtatcaatatttgacatgagca 103  Q
    |||||||||||||||||| |||||| |||||  |||| ||||||||| || || ||||||||||| |||||||  |||| |  |||| |||||| |||||    
T  49448838 aattataactctaattaatactactttcatcattctcaattcaatatattatactttgcatttatgataatagagaatgcacaaatacttgacaagagca 49448937  T
Q  104 attaaaa-catttttctctct 123  Q
     |||||| |||||||||||||    
T  49448938 cttaaaaccatttttctctct 49448958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 6 - 138
Target Start/End: Original strand, 12619687 - 12619819
Alignment:
Q  6 ttataactctaattaaaactactatcatcgctctcgattcaatatcttttaatttgcatttataataatagtaaatgtatcaatatttgacatgagcaat 105  Q
    |||||| ||||||||| |||||| ||||| || |  ||||||||| ||| | |||| |||||| ||||||||||||  |  |||| |||||| ||||| |    
T  12619687 ttataattctaattaatactactttcatcactttaaattcaatatatttcattttgtatttatgataatagtaaataaactaataattgacaagagcact 12619786  T
Q  106 taaaacatttttctctctttttcaatgatacat 138  Q
    ||||||||||||||| || ||||| | ||||||    
T  12619787 taaaacatttttctcgctctttcacttatacat 12619819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 6 - 123
Target Start/End: Original strand, 37309697 - 37309815
Alignment:
Q  6 ttataactctaattaaaactactatcatcgctctcgattcaatatcttttaatttgcatttataataatagtaaatgtatcaatatttgacatgagcaat 105  Q
    |||||||||||||||| | |||| ||||| ||||| ||||||||| ||| | ||||||||||| ||| |||  |||| ||||||| || ||| || ||||    
T  37309697 ttataactctaattaatattactttcatcactctcaattcaatatatttaactttgcatttatgatagtagagaatgcatcaatacttaacaagaacaat 37309796  T
Q  106 taaa-acatttttctctct 123  Q
    ||||  |||||||||||||    
T  37309797 taaagtcatttttctctct 37309815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 200
Target Start/End: Complemental strand, 22872499 - 22872303
Alignment:
Q  3 caattataactctaattaaaactactatcatcgctctcgattcaatatcttttaatttgcatttataataatagtaaatgtatcaatatttgac--atga 100  Q
    ||||||||||||||||||| | |||| ||||| ||||| ||||||||| ||  | ||||||||||| ||||| |  |||| | ||||| |||||  | ||    
T  22872499 caattataactctaattaatattactttcatcactctcaattcaatatattccactttgcatttatgataatggagaatgcaccaatacttgacaaacga 22872400  T
Q  101 gcaattaaaa-catttttctctctttttcaatgatacatatatttttctttattagtgtgaaataaataaactgctcacttaaattaggacggacggagt 199  Q
    ||| |||||| |||||||||||||| |||| | ||||    ||||||||| ||  ||||||||| |  |||  |||||||||| || ||||||| |||||    
T  22872399 gcacttaaaaccatttttctctcttcttcacttatac----atttttcttaatatgtgtgaaatgagcaaatggctcacttaatttgggacggagggagt 22872304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 38160265 - 38160169
Alignment:
Q  1 ttcaattataactctaattaaaactactatcatcgctctcgattcaatatcttttaatttgcatttataataatagtaaatgtatcaatatttgaca 97  Q
    ||||||||||||||||||||| | |||| | ||| ||||| ||||||||| ||| | |||| |||||| ||||| |  |||| ||||||||||||||    
T  38160265 ttcaattataactctaattaatattacttttatcactctcaattcaatatatttcactttgtatttatgataatggagaatgcatcaatatttgaca 38160169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 17237037 - 17237104
Alignment:
Q  1 ttcaattataactctaattaaaactactatcatcgctctcgattcaatatcttttaatttgcatttat 68  Q
    ||||||||||||||||||||| |||||| |||||||| || ||||||||| ||  | |||||||||||    
T  17237037 ttcaattataactctaattaatactactttcatcgctttcaattcaatatattccactttgcatttat 17237104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 3 - 73
Target Start/End: Original strand, 38319907 - 38319977
Alignment:
Q  3 caattataactctaattaaaactactatcatcgctctcgattcaatatcttttaatttgcatttataataa 73  Q
    |||||||||| |||||||| |||||| ||||| ||||| ||||||||| || || ||||||||||| ||||    
T  38319907 caattataacactaattaatactactttcatcactctcaattcaatatattctactttgcatttatgataa 38319977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 123
Target Start/End: Original strand, 4727569 - 4727637
Alignment:
Q  55 taatttgcatttataataatagtaaatgtatcaatatttgacatgagcaattaaaacatttttctctct 123  Q
    |||||||||||||| ||||| | ||||| |||||||||| ||| || || ||||| |||||||||||||    
T  4727569 taatttgcatttatgataatggaaaatgcatcaatatttaacaagaacatttaaatcatttttctctct 4727637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 40021061 - 40020965
Alignment:
Q  1 ttcaattataactctaattaaaactactatcatcgctctcgattcaatatcttttaatttgcatttataataatagtaaatgtatcaatatttgaca 97  Q
    ||||||||||||||||||||| |||||| ||||| ||| | ||| ||||| || |  ||||||| ||| ||||| ||||||| | ||||| ||||||    
T  40021061 ttcaattataactctaattaatactactgtcatcactcccaatttaatatattcttttttgcatctatgataatggtaaatgcaccaatacttgaca 40020965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 55360461 - 55360389
Alignment:
Q  1 ttcaattataactctaattaaaactactatcatcgctctcgattcaatatcttttaatttgcatttataataa 73  Q
    ||||||||||||||||||||| | |||| ||||| ||||| ||||||||| || || ||| ||||||| ||||    
T  55360461 ttcaattataactctaattaatattactttcatcactctcaattcaatatattgtactttacatttatgataa 55360389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 73
Target Start/End: Complemental strand, 35998225 - 35998158
Alignment:
Q  6 ttataactctaattaaaactactatcatcgctctcgattcaatatcttttaatttgcatttataataa 73  Q
    |||||||||||||||| |||||| ||| | ||||| ||||||||| ||||| ||| ||||||| ||||    
T  35998225 ttataactctaattaatactactttcaccactctcaattcaatatattttactttacatttatgataa 35998158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 72
Target Start/End: Original strand, 3686010 - 3686076
Alignment:
Q  6 ttataactctaattaaaactactatcatcgctctcgattcaatatcttttaatttgcatttataata 72  Q
    |||||||||||||||| | |||| ||||| ||||| ||||||||| ||  | |||||||||||||||    
T  3686010 ttataactctaattaatattactttcatcactctcaattcaatatattcaactttgcatttataata 3686076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 50
Target Start/End: Complemental strand, 42185904 - 42185860
Alignment:
Q  6 ttataactctaattaaaactactatcatcgctctcgattcaatat 50  Q
    |||||||||||||||| |||||| ||||| ||||| |||||||||    
T  42185904 ttataactctaattaatactactttcatcactctcaattcaatat 42185860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 68
Target Start/End: Original strand, 47846896 - 47846960
Alignment:
Q  4 aattataactctaattaaaactactatcatcgctctcgattcaatatcttttaatttgcatttat 68  Q
    |||||||||||||||||| |||||| ||||| |||   ||||||||| ||| | |||||||||||    
T  47846896 aattataactctaattaatactactttcatcactcctaattcaatatatttcactttgcatttat 47846960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 3862285 - 3862212
Alignment:
Q  1 ttcaattataactctaattaaaactactatcatcgctctcgattcaatatcttttaatttgcatttataataat 74  Q
    ||||||||||||||||||||| | |||| ||||| ||||| ||||| ||| ||||||||||||||||| |||||    
T  3862285 ttcaattataactctaattaatattactttcatcactctcaattcagtatattttaatttgcatttatgataat 3862212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 3 - 73
Target Start/End: Complemental strand, 39329861 - 39329791
Alignment:
Q  3 caattataactctaattaaaactactatcatcgctctcgattcaatatcttttaatttgcatttataataa 73  Q
    ||||||||| ||||||||| |||||| ||||| ||||| ||||||||| || || ||||||||||| ||||    
T  39329861 caattataattctaattaatactactttcatcactctcaattcaatatattctactttgcatttatgataa 39329791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 45241005 - 45241143
Alignment:
Q  1 ttcaattataactctaattaaaactactatcatcgctctcgattcaatatcttttaatttgcatttataataatagtaaatgtatcaatatttgacatga 100  Q
    ||||||||||||| ||||||| |||||| | ||| ||||   |||||| | || || ||||||||||   | |||||||||||  ||||| |||||| ||    
T  45241005 ttcaattataactataattaatactacttttatcactcttagttcaatgtattctactttgcatttacgttgatagtaaatgtcccaatacttgacaaga 45241104  T
Q  101 gcaattaaaa-catttttctctctttttcaatgatacat 138  Q
    ||| |||||| |||||||||||||| |||| | ||||||    
T  45241105 gcacttaaaaccatttttctctcttcttcactaatacat 45241143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 73
Target Start/End: Original strand, 9218144 - 9218211
Alignment:
Q  6 ttataactctaattaaaactactatcatcgctctcgattcaatatcttttaatttgcatttataataa 73  Q
    |||||||||||||||| |||||| ||||| ||||| ||||| ||| || || ||||||||||| ||||    
T  9218144 ttataactctaattaatactactttcatcactctcaattcattatattctactttgcatttatgataa 9218211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 74
Target Start/End: Complemental strand, 27668437 - 27668367
Alignment:
Q  4 aattataactctaattaaaactactatcatcgctctcgattcaatatcttttaatttgcatttataataat 74  Q
    |||||||||||||||||| |||||| | ||| ||||  ||||||||| ||| | ||||||||||| |||||    
T  27668437 aattataactctaattaatactacttttatcactcttaattcaatatatttcactttgcatttatgataat 27668367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 72
Target Start/End: Complemental strand, 32023209 - 32023143
Alignment:
Q  6 ttataactctaattaaaactactatcatcgctctcgattcaatatcttttaatttgcatttataata 72  Q
    |||||||||||||||| | |||| ||||| ||||| ||||||||| ||  | |||||||||||||||    
T  32023209 ttataactctaattaatattactttcatcactctcaattcaatatattcaactttgcatttataata 32023143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 73
Target Start/End: Complemental strand, 46194317 - 46194247
Alignment:
Q  3 caattataactctaattaaaactactatcatcgctctcgattcaatatcttttaatttgcatttataataa 73  Q
    |||||||||| |||||||| |||||| ||| | ||||| ||||||||| || || ||||||||||| ||||    
T  46194317 caattataacactaattaatactactttcaccactctcaattcaatatattctactttgcatttatgataa 46194247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 118
Target Start/End: Complemental strand, 46628024 - 46627920
Alignment:
Q  15 taattaaaactactatcatcgctctcgattcaatatcttttaatttgcatttataataatagtaaatgtatcaatatttgacatgagcaattaaaa-cat 113  Q
    ||||||| |||||| | |||  |||| ||||||||| || || ||||||||||| ||||| ||||||  ||||||| |||||| || || |||||| |||    
T  46628024 taattaatactacttttatcattctctattcaatatattatactttgcatttatgataatggtaaatacatcaatacttgacaagaacacttaaaatcat 46627925  T
Q  114 ttttc 118  Q
    |||||    
T  46627924 ttttc 46627920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 4 - 124
Target Start/End: Original strand, 40061806 - 40061927
Alignment:
Q  4 aattataactctaattaaaactactatcatcgctctcgattcaatatcttttaatttgcatttataataatagtaaatgtatcaatatttgacatgagca 103  Q
    |||||||| ||||||||| | |||| ||||| ||||| ||||||||| || |||||||||||||| |||||   ||||||| ||||| |||| | || ||    
T  40061806 aattataattctaattaatattactttcatcactctcaattcaatatattctaatttgcatttatgataatgaaaaatgtaacaatacttgataagaaca 40061905  T
Q  104 attaaaa-catttttctctctt 124  Q
     |||||| ||||||||||||||    
T  40061906 tttaaaatcatttttctctctt 40061927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 125
Target Start/End: Original strand, 27831841 - 27831965
Alignment:
Q  3 caattata-actctaattaaaactactatcatcgctctcgattcaatatcttttaatttgcatttataataatagtaaatgtatcaatatttgacatgag 101  Q
    |||||||| ||||||||||| |||||| ||||| ||| | ||||||||||||  | ||||||||||| ||||| || |||| | ||||| |||||| | |    
T  27831841 caattatacactctaattaatactactttcatcactcccaattcaatatcttccactttgcatttatgataatggtgaatgcaccaatacttgacaaggg 27831940  T
Q  102 caattaaaac-atttttctctcttt 125  Q
    || ||||||| ||||||||||||||    
T  27831941 cacttaaaactatttttctctcttt 27831965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 123
Target Start/End: Complemental strand, 3718957 - 3718840
Alignment:
Q  7 tataactctaattaaaactactatcatcgctctcgattcaatatcttttaatttgcatttataataatagtaaatgtatcaatatttgacatgagcaatt 106  Q
    ||||||||||||||| |||||  ||||| ||||| ||||||||| || || ||| ||||||| |||||  |||||| |  |||| |||||| ||||| ||    
T  3718957 tataactctaattaatactaccttcatcactctcaattcaatatattatactttacatttatgataatgataaatgcacaaatacttgacaagagcactt 3718858  T
Q  107 aaaac-atttttctctct 123  Q
    ||||| ||||||||||||    
T  3718857 aaaactatttttctctct 3718840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 4 - 74
Target Start/End: Complemental strand, 10587692 - 10587622
Alignment:
Q  4 aattataactctaattaaaactactatcatcgctctcgattcaatatcttttaatttgcatttataataat 74  Q
    ||||||||| |||||||| |||||| ||||| ||||| ||||||||| || || ||||||||||| |||||    
T  10587692 aattataacactaattaatactactttcatcactctcaattcaatatattctattttgcatttatgataat 10587622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 3 - 73
Target Start/End: Original strand, 29225749 - 29225819
Alignment:
Q  3 caattataactctaattaaaactactatcatcgctctcgattcaatatcttttaatttgcatttataataa 73  Q
    ||||||||||||||||||| |||||| ||||| ||| | ||||||||| || || ||||||||||| ||||    
T  29225749 caattataactctaattaatactactttcatcactcccaattcaatatattctactttgcatttatgataa 29225819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 90
Target Start/End: Original strand, 32587764 - 32587848
Alignment:
Q  6 ttataactctaattaaaactactatcatcgctctcgattcaatatcttttaatttgcatttataataatagtaaatgtatcaata 90  Q
    |||||||||||||||| | || | ||||| ||||| ||||||||| ||| | ||||||||||| ||||| | ||||| |||||||    
T  32587764 ttataactctaattaataataatttcatcactctcaattcaatatatttcactttgcatttatgataatggaaaatgcatcaata 32587848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 33149267 - 33149339
Alignment:
Q  1 ttcaattataactctaattaaaactactatcatcgctctcgattcaatatcttttaatttgcatttataataa 73  Q
    |||||| ||||| |||||||| |||||| ||||| ||||| ||||||||| || || ||||||||||| ||||    
T  33149267 ttcaataataacactaattaatactactttcatcactctcaattcaatatattctactttgcatttatgataa 33149339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 39420578 - 39420650
Alignment:
Q  1 ttcaattataactctaattaaaactactatcatcgctctcgattcaatatcttttaatttgcatttataataa 73  Q
    ||||||||||| ||||||||| |||||| ||||   |||| |||||| || ||||| ||||||||||||||||    
T  39420578 ttcaattataaatctaattaatactactttcataattctcaattcaacatgttttactttgcatttataataa 39420650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 52382500 - 52382428
Alignment:
Q  1 ttcaattataactctaattaaaactactatcatcgctctcgattcaatatcttttaatttgcatttataataa 73  Q
    ||||||||||||||||||||| | |||| ||| | ||||| ||||||||| ||||| ||| ||||||| ||||    
T  52382500 ttcaattataactctaattaatattactttcaccactctcaattcaatatattttactttacatttatgataa 52382428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 124
Target Start/End: Complemental strand, 34877200 - 34877081
Alignment:
Q  5 attataactctaattaaaactactatcatcgctctcgattcaatatcttttaatttgcatttataataatagtaaatgtatcaatatttgacatgagcaa 104  Q
    ||||||||||||||||| | || | ||||| ||| | ||||||||| ||  | ||||||||||| ||||||| ||||| |  ||||||| ||  |||||     
T  34877200 attataactctaattaatattattttcatcactcacaattcaatatattcaactttgcatttatgataatagaaaatgcacgaatatttaaccagagcac 34877101  T
Q  105 ttaaaacatttttctctctt 124  Q
    |||||||| |||| ||||||    
T  34877100 ttaaaacaattttttctctt 34877081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 40019753 - 40019876
Alignment:
Q  1 ttcaattataactctaattaaaactactatcatcgctctcgattcaatatcttttaatttgcatttataataatagtaaatgtatcaatatttgacatga 100  Q
    ||||||||||||||||||||| | |||| ||||| ||||  ||||||||| ||| | ||||  ||||| ||||| || |||  |  |||| |||||| ||    
T  40019753 ttcaattataactctaattaatattactttcatcactctgaattcaatatttttcactttgtctttatgataatggtgaatacacaaatacttgacaaga 40019852  T
Q  101 gcaattaaaac-atttttctctct 123  Q
    ||| ||||||| ||||||||||||    
T  40019853 gcacttaaaacaatttttctctct 40019876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 73
Target Start/End: Original strand, 2886167 - 2886237
Alignment:
Q  3 caattataactctaattaaaactactatcatcgctctcgattcaatatcttttaatttgcatttataataa 73  Q
    |||||||||| |||||||| |||||| ||| | ||||| ||||||||| || || ||||||||||| ||||    
T  2886167 caattataacactaattaatactactttcaccactctcaattcaatatattctactttgcatttatgataa 2886237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 68
Target Start/End: Complemental strand, 7785383 - 7785321
Alignment:
Q  6 ttataactctaattaaaactactatcatcgctctcgattcaatatcttttaatttgcatttat 68  Q
    |||||||||||||||| |||||| | ||||||||| ||||||||| ||| | ||| |||||||    
T  7785383 ttataactctaattaatactacttttatcgctctcaattcaatatatttcactttacatttat 7785321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 68
Target Start/End: Original strand, 8327716 - 8327778
Alignment:
Q  6 ttataactctaattaaaactactatcatcgctctcgattcaatatcttttaatttgcatttat 68  Q
    |||||||||||||||| |||||| ||||| ||||| ||||||||| ||  | |||||||||||    
T  8327716 ttataactctaattaatactactttcatcactctcaattcaatatattccattttgcatttat 8327778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 74
Target Start/End: Original strand, 17342826 - 17342895
Alignment:
Q  5 attataactctaattaaaactactatcatcgctctcgattcaatatcttttaatttgcatttataataat 74  Q
    ||||||||||||||||| |||||| | ||| ||||| ||||||||| ||| | |||| |||||| |||||    
T  17342826 attataactctaattaatactacttttatcactctcaattcaatatatttcactttgtatttatgataat 17342895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 201
Target Start/End: Complemental strand, 4466135 - 4466071
Alignment:
Q  137 atatatttttctttattagtgtgaaataaataaactgctcacttaaattaggacggacggagtaa 201  Q
    ||||||||||||| || |||||||||| || |||  ||||| ||||||| ||||||| |||||||    
T  4466135 atatatttttcttaataagtgtgaaatgaacaaatggctcaattaaattgggacggagggagtaa 4466071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 37925360 - 37925288
Alignment:
Q  1 ttcaattataactctaattaaaactactatcatcgctctcgattcaatatcttttaatttgcatttataataa 73  Q
    |||||||||||| |||||||| | |||| ||| | ||||| ||||||||| || || ||||||||||| ||||    
T  37925360 ttcaattataacactaattaatattactttcaccactctcaattcaatatattctactttgcatttatgataa 37925288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 73
Target Start/End: Original strand, 25778741 - 25778810
Alignment:
Q  4 aattataactctaattaaaactactatcatcgctctcgattcaatatcttttaatttgcatttataataa 73  Q
    |||||||||||||||||| |||||| ||||| ||  | ||||||||| ||||| ||||||||||| ||||    
T  25778741 aattataactctaattaatactactttcatcacttccaattcaatatattttactttgcatttatgataa 25778810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 30462654 - 30462726
Alignment:
Q  1 ttcaattataactctaattaaaactactatcatcgctctcgattcaatatcttttaatttgcatttataataa 73  Q
    ||||||||||||||||||||| |||| | ||||| ||||| ||||||||| || || ||| ||||||| ||||    
T  30462654 ttcaattataactctaattaatactaatttcatcactctcaattcaatatattatattttacatttatgataa 30462726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 74
Target Start/End: Complemental strand, 14649030 - 14648959
Alignment:
Q  3 caattataactctaattaaaactactatcatcgctctcgattcaatatcttttaatttgcatttataataat 74  Q
    ||||||||||||||||||| | |||| ||||| ||||| ||||||||| || ||  |||||||||| |||||    
T  14649030 caattataactctaattaatattactttcatcactctcaattcaatatattctaccttgcatttatgataat 14648959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 73
Target Start/End: Original strand, 34064211 - 34064281
Alignment:
Q  3 caattataactctaattaaaactactatcatcgctctcgattcaatatcttttaatttgcatttataataa 73  Q
    ||||||||||||||||||| | |||| ||||| ||||| ||||||||| || || ||| ||||||| ||||    
T  34064211 caattataactctaattaatattactttcatcactctcaattcaatatattctactttacatttatgataa 34064281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 125
Target Start/End: Original strand, 37264310 - 37264432
Alignment:
Q  4 aattataactctaattaaaactactatcatcgctctcgattcaatatcttttaatttgcatttataataatagtaaatgtatcaatatttgacatgagca 103  Q
    |||||||||||||||||| |||||| ||| | ||| | ||||||||| || || ||||||||||| ||||     |||| ||||||| |||||| | |||    
T  37264310 aattataactctaattaatactactttcaccactcccaattcaatatattctactttgcatttatgataaagagcaatgcatcaatacttgacaagggca 37264409  T
Q  104 attaaaa-catttttctctcttt 125  Q
     | |||| |||||||||||||||    
T  37264410 ctcaaaaccatttttctctcttt 37264432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 73
Target Start/End: Complemental strand, 37496508 - 37496438
Alignment:
Q  3 caattataactctaattaaaactactatcatcgctctcgattcaatatcttttaatttgcatttataataa 73  Q
    ||||||||||| ||||||| |||||| ||||| ||||| ||||||||| || || ||| ||||||| ||||    
T  37496508 caattataactttaattaatactactttcatcactctcaattcaatatattctactttacatttatgataa 37496438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 73
Target Start/End: Original strand, 9602858 - 9602927
Alignment:
Q  4 aattataactctaattaaaactactatcatcgctctcgattcaatatcttttaatttgcatttataataa 73  Q
    ||||||||| |||||||| |||||| ||| | ||||| ||||||||| || || ||||||||||| ||||    
T  9602858 aattataacactaattaatactactttcaccactctcaattcaatatgttctactttgcatttatgataa 9602927  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 73
Target Start/End: Original strand, 9830429 - 9830498
Alignment:
Q  4 aattataactctaattaaaactactatcatcgctctcgattcaatatcttttaatttgcatttataataa 73  Q
    ||||||||| |||||||| |||||| ||| | ||||| ||||||||| || || ||||||||||| ||||    
T  9830429 aattataacactaattaatactactttcaccactctcaattcaatatgttctactttgcatttatgataa 9830498  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 76
Target Start/End: Complemental strand, 25940856 - 25940787
Alignment:
Q  7 tataactctaattaaaactactatcatcgctctcgattcaatatcttttaatttgcatttataataatag 76  Q
    ||||||||||||||| |||||| ||||| ||||  ||| ||||| || || ||||||||||| |||||||    
T  25940856 tataactctaattaatactactttcatcactctaaatttaatatattctagtttgcatttatgataatag 25940787  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 2849249 - 2849321
Alignment:
Q  1 ttcaattataactctaattaaaactactatcatcgctctcgattcaatatcttttaatttgcatttataataa 73  Q
    ||||||||||| ||||||||| |||||| ||| | ||||| ||||||||| || || ||| ||||||| ||||    
T  2849249 ttcaattataattctaattaatactactttcaccactctcaattcaatatattctactttacatttatgataa 2849321  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 19687952 - 19688072
Alignment:
Q  1 ttcaattataactctaattaa-aactactatcatcgctctcgattcaatatcttttaatttgcatttataataatagtaaatgtatcaatatttgacatg 99  Q
    |||||||| || ||||||||| ||||||| ||||   || | ||||||||| || || ||||||||||| ||||| ||||||  ||||||| |||||| |    
T  19687952 ttcaattacaattctaattaataactactttcatgattcacaattcaatatattatactttgcatttatgataatggtaaattcatcaatacttgacaag 19688051  T
Q  100 agcaatt-aaaacatttttct 119  Q
    | || || |||||||||||||    
T  19688052 aacacttaaaaacatttttct 19688072  T

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Target: scaffold0685 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0685
Description:

Target: scaffold0685; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 6513 - 6441
Alignment:
Q  1 ttcaattataactctaattaaaactactatcatcgctctcgattcaatatcttttaatttgcatttataataa 73  Q
    ||||||||||||||||||||| | |||| ||| | ||||| ||||||||| ||||| ||| ||||||| ||||    
T  6513 ttcaattataactctaattaatattactttcaccactctcaattcaatatattttactttacatttatgataa 6441  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 90
Target Start/End: Complemental strand, 7739622 - 7739542
Alignment:
Q  10 aactctaattaaaactactatcatcgctctcgattcaatatcttttaatttgcatttataataatagtaaatgtatcaata 90  Q
    |||||||||||| |||||| | |||  |||| |||||||||||| || ||| ||||||||||||| || |||| |||||||    
T  7739622 aactctaattaatactacttttatcattctcaattcaatatcttctactttacatttataataatggtgaatgcatcaata 7739542  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 34803820 - 34803753
Alignment:
Q  1 ttcaattataactctaattaaaactactatcatcgctctcgattcaatatcttttaatttgcatttat 68  Q
    ||||||||||||| ||||||| |||||| |||   ||||| ||||||||| ||||| |||||||||||    
T  34803820 ttcaattataactataattaatactactttcacaactctcaattcaatatattttattttgcatttat 34803753  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 28538990 - 28539062
Alignment:
Q  1 ttcaattataactctaattaaaactactatcatcgctctcgattcaatatcttttaatttgcatttataataa 73  Q
    ||||||||||||||||||||| || ||| ||||| || |  ||| ||||| || || ||||||||||||||||    
T  28538990 ttcaattataactctaattaataccactttcatcacttttaatttaatatattctactttgcatttataataa 28539062  T

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Target: scaffold0578 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0578
Description:

Target: scaffold0578; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 4023 - 4069
Alignment:
Q  1 ttcaattataactctaattaaaactactatcatcgctctcgattcaa 47  Q
    ||||||||||||||||||||| |||||| ||||| ||| ||||||||    
T  4023 ttcaattataactctaattaatactactttcatcactcccgattcaa 4069  T

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