View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2631_low_18 (Length: 247)
Name: NF2631_low_18
Description: NF2631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2631_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 63 - 229
Target Start/End: Original strand, 39309844 - 39310010
Alignment:
| Q |
63 |
gactgaataacaacaacactcaaaagaaaaagtaaaactcagatctacaaatttgggaattagttgtatttctacaaaatttgaacataatcaaacacaa |
162 |
Q |
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| T |
39309844 |
gactgaataacaacaacactcaaaagaaaaagtaaaactcagatctacaaatttgggaattagttggatttctgcaaaatttgaacataatcaaacacaa |
39309943 |
T |
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| Q |
163 |
ggctcccatcaacctaaacatgacatgaaccccatcgatctccatcttcaatttcaacccctttcac |
229 |
Q |
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| T |
39309944 |
gacacccatcaacctaaacattacatgaaccccatcgacctccatcttcaatttcaacccctttcac |
39310010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 63 - 229
Target Start/End: Original strand, 43831138 - 43831304
Alignment:
| Q |
63 |
gactgaataacaacaacactcaaaagaaaaagtaaaactcagatctacaaatttgggaattagttgtatttctacaaaatttgaacataatcaaacacaa |
162 |
Q |
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| T |
43831138 |
gactgaataataacaacactcaaaagaaaaagtaaaactcagatctacaaatttggggattagttggatttctgcaaaatttgaacatagtcaaacacaa |
43831237 |
T |
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| Q |
163 |
ggctcccatcaacctaaacatgacatgaaccccatcgatctccatcttcaatttcaacccctttcac |
229 |
Q |
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| T |
43831238 |
gacacccatcaacctaaacatgacatgaaccccatcgacctccatcttcaatttcaacccctttcac |
43831304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 70 - 197
Target Start/End: Original strand, 43308873 - 43309000
Alignment:
| Q |
70 |
taacaacaacactcaaaagaaaaagtaaaactcagatctacaaatttgggaattagttgtatttctacaaaatttgaacataatcaaacacaaggctccc |
169 |
Q |
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|||||||| || |||||||||||||||||| ||||||||||||||||||| |||| ||| |||| | ||||||||| ||||||||||||||||| | ||| |
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| T |
43308873 |
taacaacaccaatcaaaagaaaaagtaaaaatcagatctacaaatttggggattaattgaatttttgcaaaatttgtacataatcaaacacaagacaccc |
43308972 |
T |
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| Q |
170 |
atcaacctaaacatgacatgaaccccat |
197 |
Q |
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| T |
43308973 |
atcaacctaaacatcacatgaaccccat |
43309000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 63 - 115
Target Start/End: Complemental strand, 40171039 - 40170987
Alignment:
| Q |
63 |
gactgaataacaacaacactcaaaagaaaaagtaaaactcagatctacaaatt |
115 |
Q |
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|||| |||||||||||||||||||||| ||||||||| ||||||||||||||| |
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| T |
40171039 |
gactcaataacaacaacactcaaaagagaaagtaaaaatcagatctacaaatt |
40170987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 136 - 207
Target Start/End: Complemental strand, 40170923 - 40170852
Alignment:
| Q |
136 |
acaaaatttgaacataatcaaacacaaggctcccatcaacctaaacatgacatgaaccccatcgatctccat |
207 |
Q |
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||||||||||||| |||||||||||||| | |||||||||| |||| |||||||||||||||| |||||| |
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| T |
40170923 |
acaaaatttgaacctaatcaaacacaagacacccatcaaccacaacaccacatgaaccccatcgacctccat |
40170852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 197
Target Start/End: Complemental strand, 21795558 - 21795512
Alignment:
| Q |
151 |
aatcaaacacaaggctcccatcaacctaaacatgacatgaaccccat |
197 |
Q |
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||||||||||||| | ||||||||||||||||| ||||||| ||||| |
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| T |
21795558 |
aatcaaacacaagacacccatcaacctaaacatcacatgaatcccat |
21795512 |
T |
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