View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2631_low_2 (Length: 585)

Name: NF2631_low_2
Description: NF2631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2631_low_2
NF2631_low_2
[»] chr4 (3 HSPs)
chr4 (18-574)||(48538200-48538774)
chr4 (32-439)||(48572532-48572939)
chr4 (474-574)||(48572926-48573029)
[»] chr2 (1 HSPs)
chr2 (376-419)||(7657635-7657678)


Alignment Details
Target: chr4 (Bit Score: 487; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 18 - 574
Target Start/End: Original strand, 48538200 - 48538774
Alignment:
Q  18 atttccgcgcctggaccaccaccaccttgaaagtatcctccgccagccggtagaccttgaacagcaggaatgttaccacccatttggttcattggcatac 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48538200 atttccgcgcctggaccaccaccaccttgaaagtatcctccgccagccggtagaccttgaacagcaggaatgttaccacccatttggttcattggcatac 48538299  T
Q  118 tcattggtcccacattattacctccaccatccatagcagggtgaggatgaccacctccgccacccatcattttttgaaatccattgttcatagcttgaac 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48538300 tcattggtcccacattattacctccaccatccatagcagggtgaggatgaccacctccgccacccatcattttttgaaatccattgttcatagcttgaac 48538399  T
Q  218 attaccaccaccaccagcaactggtatcgacataccctttttacccccattgttattttgattattactattatgattccctccattcttgtttcctcca 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48538400 attaccaccaccaccagcaactggtatcgacataccctttttacccccattgttattttgattattactattatgattccctccattcttgtttcctcca 48538499  T
Q  318 ccaccaccatttttagcctccggcaaaccaccactatttttgttacctccaccatgattctgattatttcctccaccaccaccgccacctttctttccac 417  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  48538500 ccaccaccatttttagcctcctgcaaaccaccactatttttgttacctccaccatgattctgattatttcctccaccaccaccgccacctttctttcctc 48538599  T
Q  418 cattgccatttccgccattcatttgaaccggcacaggtccaccaccgccacttttc---------------tttccaccattcatgccatgaatttgaac 502  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||               |||||||||||||||||||||||||||||    
T  48538600 cattgccatttccgccattcatttgaaccggcacaggtccaccaccgccacttttctttcctccattgccatttccaccattcatgccatgaatttgaac 48538699  T
Q  503 cggaacaggtcctccaccaccaggtttctggccgtttccggcacta---ccaccgttaaaattgccacccttcat 574  Q
    |||||||||||||||||||||||||||||| ||||||||| ||| |   || |||||||||||||||||||||||    
T  48538700 cggaacaggtcctccaccaccaggtttctgcccgtttccgccaccaccgccgccgttaaaattgccacccttcat 48538774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 32 - 439
Target Start/End: Original strand, 48572532 - 48572939
Alignment:
Q  32 accaccaccaccttgaaagtatcctcc---gccagccggtagaccttgaacagcaggaatgttaccacccatttggttcattggcat---actcattggt 125  Q
    |||||||||||||||||||||||||||   ||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||||   || ||||||     
T  48572532 accaccaccaccttgaaagtatcctcctccgcctgccggtagaccttgaacagcaggaatgttaccacccattcggttcataggcatgggacccattggc 48572631  T
Q  126 cccacattattacctccaccatccatagcagggtgaggatgaccacc---tccgccacccatcattttttgaaatccattgttcatagcttgaacattac 222  Q
    ||||  ||||| ||||||||| ||||| |||| ||||  ||||||||   ||| |||||||||||||| |||||||||||||||||||||||||||||||    
T  48572632 cccatgttatttcctccaccacccataccaggatgagattgaccaccacctccaccacccatcattttatgaaatccattgttcatagcttgaacattac 48572731  T
Q  223 caccaccaccagcaactggtatcgacataccctttttacccccattgttattttgattattactattatgattccctccattcttgtttcctccaccacc 322  Q
    |||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||   ||||||||| ||||||||||| ||||||||    
T  48572732 caccaccaccagcaactggtatcgacatacccttcttacccccatcgttattttgattattactatt---attccctccgttcttgtttccaccaccacc 48572828  T
Q  323 accatttttagcctccggcaaaccaccactatttttgttacctccaccatgattctgattatttcctccaccaccaccgccacctttctttccaccattg 422  Q
    ||| |||||||| || ||||  |||||| ||||||||||||||||| | |||||||||||||| |||||||||      |||||||||||||| ||||||    
T  48572829 accgtttttagcttctggcatgccaccattatttttgttacctccaacttgattctgattattccctccacca------ccacctttctttcctccattg 48572922  T
Q  423 ccatttccgccattcat 439  Q
    |||||||| ||||||||    
T  48572923 ccatttccaccattcat 48572939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 474 - 574
Target Start/End: Original strand, 48572926 - 48573029
Alignment:
Q  474 tttccaccattcatgccatgaatttgaaccggaacaggtcctccaccaccaggtttctggccgtttccggcacta---ccaccgttaaaattgccaccct 570  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||| |   || |||||||||||||||||||    
T  48572926 tttccaccattcatgccatgaatttgaaccggaacaggccctccaccaccaggtttctgcccgtttccgccaccaccgccgccgttaaaattgccaccct 48573025  T
Q  571 tcat 574  Q
    ||||    
T  48573026 tcat 48573029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 376 - 419
Target Start/End: Complemental strand, 7657678 - 7657635
Alignment:
Q  376 tctgattatttcctccaccaccaccgccacctttctttccacca 419  Q
    ||||||||||||| ||||||||||| ||||||||||||||||||    
T  7657678 tctgattatttccgccaccaccaccaccacctttctttccacca 7657635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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