View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2631_low_25 (Length: 234)

Name: NF2631_low_25
Description: NF2631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2631_low_25
NF2631_low_25
[»] chr8 (7 HSPs)
chr8 (1-211)||(42797803-42798015)
chr8 (1-61)||(138805-138865)
chr8 (5-59)||(26570279-26570333)
chr8 (5-61)||(32241544-32241600)
chr8 (1-32)||(33743735-33743766)
chr8 (1-34)||(17790213-17790246)
chr8 (1-53)||(33826174-33826226)
[»] chr1 (4 HSPs)
chr1 (1-69)||(26606243-26606311)
chr1 (5-38)||(37541238-37541271)
chr1 (5-93)||(26924390-26924478)
chr1 (1-61)||(47480058-47480118)
[»] chr5 (5 HSPs)
chr5 (1-61)||(36446794-36446854)
chr5 (1-61)||(36469215-36469275)
chr5 (3-61)||(13422470-13422528)
chr5 (5-66)||(10649964-10650024)
chr5 (1-34)||(32659776-32659809)
[»] chr4 (8 HSPs)
chr4 (1-80)||(38160270-38160349)
chr4 (1-87)||(51572343-51572430)
chr4 (1-48)||(35909982-35910029)
chr4 (5-47)||(43335143-43335185)
chr4 (5-67)||(44022001-44022063)
chr4 (5-87)||(52677405-52677487)
chr4 (1-33)||(3503171-3503203)
chr4 (3-87)||(4727422-4727505)
[»] chr7 (4 HSPs)
chr7 (1-61)||(28923343-28923403)
chr7 (1-61)||(39143963-39144023)
chr7 (1-38)||(21412155-21412192)
chr7 (1-33)||(37157130-37157162)
[»] chr3 (1 HSPs)
chr3 (1-61)||(2868505-2868565)
[»] chr2 (2 HSPs)
chr2 (1-61)||(43950554-43950614)
chr2 (3-61)||(33602350-33602408)
[»] chr6 (1 HSPs)
chr6 (5-61)||(31723426-31723481)


Alignment Details
Target: chr8 (Bit Score: 167; Significance: 1e-89; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 42797803 - 42798015
Alignment:
Q  1 aaaataattaatattgtattgaaaagttaaataaatcatttaatttaagataatatttttt-ataaaagattcatttattaagggacgtagggaattttt 99  Q
    ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||    
T  42797803 aaaataattaatattgtattgaaaagtgaaataaatcacttaatttaagataatatttttttataaaagattcatttattaagggacgaagggagttttt 42797902  T
Q  100 gta--gtgtaaatgtgagaaaattatttcaatttgagttgattgattttgtggtgttgtttgcaataaaaacagctttgagaataactcagcaactaatt 197  Q
    |||  ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  42797903 gtatagtgtaaatgtgagaaaattatttcaatttgagttgatcgattttgtg-tgttgtttgcaataaaaacagctttgagaataactcagcaactaatt 42798001  T
Q  198 cctatacaaaaagg 211  Q
    ||||||||||||||    
T  42798002 cctatacaaaaagg 42798015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 138805 - 138865
Alignment:
Q  1 aaaataattaatattgtattgaaaagttaaataaatcatttaatttaagataatatttttt 61  Q
    ||||||||||||||||||||||||||| |||| | | | ||| ||||||||||||||||||    
T  138805 aaaataattaatattgtattgaaaagtgaaatgacttagttactttaagataatatttttt 138865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 5 - 59
Target Start/End: Original strand, 26570279 - 26570333
Alignment:
Q  5 taattaatattgtattgaaaagttaaataaatcatttaatttaagataatatttt 59  Q
    ||||||||||||||||||||||| |||| ||||| ||| |||||||| |||||||    
T  26570279 taattaatattgtattgaaaagtgaaatgaatcagttattttaagatgatatttt 26570333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 61
Target Start/End: Original strand, 32241544 - 32241600
Alignment:
Q  5 taattaatattgtattgaaaagttaaataaatcatttaatttaagataatatttttt 61  Q
    ||||||||||||||||||||||| |||||| ||||||| |||| |||| | ||||||    
T  32241544 taattaatattgtattgaaaagtgaaataactcatttattttaggatactttttttt 32241600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 33743766 - 33743735
Alignment:
Q  1 aaaataattaatattgtattgaaaagttaaat 32  Q
    ||||||||||||||||||||||||||||||||    
T  33743766 aaaataattaatattgtattgaaaagttaaat 33743735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 17790213 - 17790246
Alignment:
Q  1 aaaataattaatattgtattgaaaagttaaataa 34  Q
    ||||||||||||||||||||||||||| ||||||    
T  17790213 aaaataattaatattgtattgaaaagtgaaataa 17790246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 33826226 - 33826174
Alignment:
Q  1 aaaataattaatattgtattgaaaagttaaataaatcatttaatttaagataa 53  Q
    |||| |||||||||||||||||||||| |||||| ||| ||| |||| |||||    
T  33826226 aaaaaaattaatattgtattgaaaagtgaaataagtcaattattttaggataa 33826174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 26606243 - 26606311
Alignment:
Q  1 aaaataattaatattgtattgaaaagttaaataaatcatttaatttaagataatattttttataaaaga 69  Q
    ||||||||||||||||||||||||||  |||||||| | ||| ||||| ||||||||||||| ||||||    
T  26606243 aaaataattaatattgtattgaaaagcgaaataaataagttattttaaaataatattttttacaaaaga 26606311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 38
Target Start/End: Original strand, 37541238 - 37541271
Alignment:
Q  5 taattaatattgtattgaaaagttaaataaatca 38  Q
    ||||||||||||||||||||||| ||||||||||    
T  37541238 taattaatattgtattgaaaagtgaaataaatca 37541271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 93
Target Start/End: Original strand, 26924390 - 26924478
Alignment:
Q  5 taattaatattgtattgaaaagttaaataaatcatttaatttaagataatattttttataaaagattcatttattaagggacgtaggga 93  Q
    ||||||||||||||||||||||| |||| ||||| ||  | |  || ||||||||||| ||| || ||| |||||| |||||| |||||    
T  26924390 taattaatattgtattgaaaagtgaaatgaatcaatttttctgggacaatattttttacaaatgactcaattattatgggacggaggga 26924478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 47480058 - 47480118
Alignment:
Q  1 aaaataattaatattgtattgaaaagttaaataaatcatttaatttaagataatatttttt 61  Q
    |||||||||||||||| |||||||||| | |||||| | ||  ||||||| ||||||||||    
T  47480058 aaaataattaatattgcattgaaaagtaagataaataaattgttttaagacaatatttttt 47480118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 36446794 - 36446854
Alignment:
Q  1 aaaataattaatattgtattgaaaagttaaataaatcatttaatttaagataatatttttt 61  Q
    ||||||||||||||||||||||||| | |||| ||||| ||| ||||||| ||||||||||    
T  36446794 aaaataattaatattgtattgaaaaatgaaatgaatcaattattttaagacaatatttttt 36446854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 36469215 - 36469275
Alignment:
Q  1 aaaataattaatattgtattgaaaagttaaataaatcatttaatttaagataatatttttt 61  Q
    ||||||||||||||||||||||||| | |||| ||||| ||| ||||||| ||||||||||    
T  36469215 aaaataattaatattgtattgaaaaatgaaatgaatcaattattttaagacaatatttttt 36469275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 61
Target Start/End: Original strand, 13422470 - 13422528
Alignment:
Q  3 aataattaatattgtattgaaaagttaaataaatcatttaatttaagataatatttttt 61  Q
    ||||||||||||||||||||||||| |||| ||||| ||| |||| || ||||||||||    
T  13422470 aataattaatattgtattgaaaagtgaaatgaatcagttattttatgacaatatttttt 13422528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 66
Target Start/End: Complemental strand, 10650024 - 10649964
Alignment:
Q  5 taattaatattgtattgaaaagttaaataaatcatttaatttaagataatattttttataaa 66  Q
    ||||||||||||||||||||||| |||| | ||| ||| ||||||| |||| ||||||||||    
T  10650024 taattaatattgtattgaaaagtaaaatgagtca-ttattttaagacaatactttttataaa 10649964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 32659809 - 32659776
Alignment:
Q  1 aaaataattaatattgtattgaaaagttaaataa 34  Q
    ||||||||||||||||||||||||||| ||||||    
T  32659809 aaaataattaatattgtattgaaaagtaaaataa 32659776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 38160270 - 38160349
Alignment:
Q  1 aaaataattaatattgtattgaaaagttaaataaatcatttaatttaagataatattttttataaaagattcatttatta 80  Q
    ||||||||||||||||||||||||||| ||||  || | ||| || | |||||||||||||| ||||| |||| ||||||    
T  38160270 aaaataattaatattgtattgaaaagtgaaattgattagttatttcaggataatattttttacaaaaggttcacttatta 38160349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 51572343 - 51572430
Alignment:
Q  1 aaaataattaatattgtattgaaaagttaaataaatcatttaatttaagataata-ttttttataaaagattcatttattaagggacg 87  Q
    |||| |||||||||||||||||||||| |||||| ||| ||| |||| || |||| ||||||| ||||| |||| |||||| ||||||    
T  51572343 aaaaaaattaatattgtattgaaaagtgaaataagtcaattattttaggacaatatttttttacaaaaggttcagttattatgggacg 51572430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 35909982 - 35910029
Alignment:
Q  1 aaaataattaatattgtattgaaaagttaaataaatcatttaatttaa 48  Q
    ||||||||||||||||||||||||||| |||||| ||| ||| |||||    
T  35909982 aaaataattaatattgtattgaaaagtaaaataactcagttagtttaa 35910029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 43335143 - 43335185
Alignment:
Q  5 taattaatattgtattgaaaagttaaataaatcatttaattta 47  Q
    ||||||||||||||||||||||| |||||||||| ||| ||||    
T  43335143 taattaatattgtattgaaaagtgaaataaatcagttatttta 43335185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 67
Target Start/End: Original strand, 44022001 - 44022063
Alignment:
Q  5 taattaatattgtattgaaaagttaaataaatcatttaatttaagataatattttttataaaa 67  Q
    ||||||||||||||||||||| | ||||  |||| ||| ||||||| ||||||||||| ||||    
T  44022001 taattaatattgtattgaaaattgaaatggatcaattattttaagacaatattttttacaaaa 44022063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 87
Target Start/End: Original strand, 52677405 - 52677487
Alignment:
Q  5 taattaatattgtattgaaaagttaaataaatcatttaatttaagataatattttttataaaagattcatttattaagggacg 87  Q
    |||||||||||| |||||||| | |||| | ||| ||| ||||| | ||||||||||| |||||| ||  |||||||||||||    
T  52677405 taattaatattgcattgaaaattaaaatgagtcagttattttaaaacaatattttttacaaaagactcgcttattaagggacg 52677487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 3503171 - 3503203
Alignment:
Q  1 aaaataattaatattgtattgaaaagttaaata 33  Q
    ||||||||||||||||||||||||||| |||||    
T  3503171 aaaataattaatattgtattgaaaagtgaaata 3503203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 87
Target Start/End: Complemental strand, 4727505 - 4727422
Alignment:
Q  3 aataattaatattgtattgaaaagttaaataaatcatttaatttaagataatattttttataaaagattcatttattaagggacg 87  Q
    |||||||||||||| |||||||||| ||||  |||| ||| ||||| | ||||||||||| |||||  ||| | |||||||||||    
T  4727505 aataattaatattgcattgaaaagtgaaatggatcaattattttaatacaatatttttta-aaaaggatcactcattaagggacg 4727422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 28923343 - 28923403
Alignment:
Q  1 aaaataattaatattgtattgaaaagttaaataaatcatttaatttaagataatatttttt 61  Q
    ||||||||||||||||||||||||| | |||||| ||| ||| ||||||| ||| ||||||    
T  28923343 aaaataattaatattgtattgaaaaatgaaataagtcagttattttaagacaatttttttt 28923403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 39143963 - 39144023
Alignment:
Q  1 aaaataattaatattgtattgaaaagttaaataaatcatttaatttaagataatatttttt 61  Q
    |||| ||||||||||||||||||||||||||| ||| | ||  |||| |||||||||||||    
T  39143963 aaaaaaattaatattgtattgaaaagttaaatgaattaatttttttaggataatatttttt 39144023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 21412155 - 21412192
Alignment:
Q  1 aaaataattaatattgtattgaaaagttaaataaatca 38  Q
    ||||||||||||||||||||||||||| |||| |||||    
T  21412155 aaaataattaatattgtattgaaaagtgaaatgaatca 21412192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 37157162 - 37157130
Alignment:
Q  1 aaaataattaatattgtattgaaaagttaaata 33  Q
    ||||||||||||||||||||||||||| |||||    
T  37157162 aaaataattaatattgtattgaaaagtgaaata 37157130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 2868565 - 2868505
Alignment:
Q  1 aaaataattaatattgtattgaaaagttaaataaatcatttaatttaagataatatttttt 61  Q
    ||||||||||||||||||||||||||| ||||  |||| ||| |||| || ||||||||||    
T  2868565 aaaataattaatattgtattgaaaagtgaaatggatcagttattttaggacaatatttttt 2868505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 43950554 - 43950614
Alignment:
Q  1 aaaataattaatattgtattgaaaagttaaataaatcatttaatttaagataatatttttt 61  Q
    |||||||||||||||  |||||||||| |||||| ||| ||| |||| |||||||||||||    
T  43950554 aaaataattaatattacattgaaaagtgaaataagtcagttattttaggataatatttttt 43950614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 61
Target Start/End: Original strand, 33602350 - 33602408
Alignment:
Q  3 aataattaatattgtattgaaaagttaaataaatcatttaatttaagataatatttttt 61  Q
    ||||||||||||||||||||||||| ||||| |||| ||| ||||  | ||||||||||    
T  33602350 aataattaatattgtattgaaaagtgaaatagatcagttattttagaacaatatttttt 33602408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 61
Target Start/End: Complemental strand, 31723481 - 31723426
Alignment:
Q  5 taattaatattgtattgaaaagttaaataaatcatttaatttaagataatatttttt 61  Q
    ||||||||||||||||||||||| |||||  ||| ||| |||| |||||||||||||    
T  31723481 taattaatattgtattgaaaagtgaaatatgtca-ttattttatgataatatttttt 31723426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University