View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2631_low_26 (Length: 216)

Name: NF2631_low_26
Description: NF2631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2631_low_26
NF2631_low_26
[»] chr6 (10 HSPs)
chr6 (14-79)||(33300898-33300963)
chr6 (14-78)||(5131095-5131159)
chr6 (14-78)||(26620841-26620905)
chr6 (14-78)||(26726820-26726884)
chr6 (14-78)||(34255947-34256011)
chr6 (14-78)||(8519541-8519605)
chr6 (144-196)||(33301028-33301080)
chr6 (15-78)||(28144655-28144718)
chr6 (144-196)||(28144521-28144574)
chr6 (144-196)||(34256092-34256145)
[»] scaffold0046 (1 HSPs)
scaffold0046 (14-79)||(90095-90160)
[»] chr7 (6 HSPs)
chr7 (14-78)||(42786255-42786319)
chr7 (14-78)||(48477634-48477698)
chr7 (14-78)||(4340809-4340873)
chr7 (14-78)||(19802516-19802580)
chr7 (15-78)||(21958966-21959029)
chr7 (144-196)||(21959109-21959162)
[»] chr4 (9 HSPs)
chr4 (14-78)||(5908765-5908829)
chr4 (14-78)||(1505604-1505668)
chr4 (14-78)||(5599485-5599549)
chr4 (19-78)||(5578867-5578926)
chr4 (18-78)||(13702210-13702270)
chr4 (18-78)||(13712703-13712763)
chr4 (14-79)||(4852214-4852279)
chr4 (144-196)||(5579007-5579060)
chr4 (144-196)||(5599383-5599434)
[»] chr8 (3 HSPs)
chr8 (15-69)||(5557400-5557454)
chr8 (14-76)||(20810774-20810836)
chr8 (144-196)||(5557256-5557309)
[»] scaffold0158 (1 HSPs)
scaffold0158 (14-78)||(37199-37263)
[»] chr3 (3 HSPs)
chr3 (14-78)||(14521403-14521467)
chr3 (144-196)||(19359769-19359822)
chr3 (144-196)||(14521548-14521601)
[»] chr1 (1 HSPs)
chr1 (16-79)||(14115301-14115364)
[»] chr5 (2 HSPs)
chr5 (15-69)||(41528154-41528208)
chr5 (144-196)||(41528010-41528063)


Alignment Details
Target: chr6 (Bit Score: 62; Significance: 6e-27; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 33300898 - 33300963
Alignment:
Q  14 gaatcagagacatactcaaataagtatgtcaaagtataagctataccagtatacgatagattggac 79  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  33300898 gaatcagagacatactcaaataagtatgtcaaagtataagctatactagtatacgatagattggac 33300963  T

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Target: chr6; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 5131095 - 5131159
Alignment:
Q  14 gaatcagagacatactcaaataagtatgtcaaagtataagctataccagtatacgatagattgga 78  Q
    |||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||| ||||||    
T  5131095 gaatcagagacatactcagataagtatgtcaaagtataagttataccagaatacgatatattgga 5131159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 26620841 - 26620905
Alignment:
Q  14 gaatcagagacatactcaaataagtatgtcaaagtataagctataccagtatacgatagattgga 78  Q
    |||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||| ||||||    
T  26620841 gaatcagagacatactcagataagtatgtcaaagtataagttataccagaatacgatatattgga 26620905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 26726820 - 26726884
Alignment:
Q  14 gaatcagagacatactcaaataagtatgtcaaagtataagctataccagtatacgatagattgga 78  Q
    |||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||| ||||||    
T  26726820 gaatcagagacatactcagataagtatgtcaaagtataagttataccagaatacgatatattgga 26726884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 34255947 - 34256011
Alignment:
Q  14 gaatcagagacatactcaaataagtatgtcaaagtataagctataccagtatacgatagattgga 78  Q
    |||||||||||||||||| ||||||||||||||||||||||||||| || |||||||| ||||||    
T  34255947 gaatcagagacatactcatataagtatgtcaaagtataagctatactagaatacgatatattgga 34256011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 8519605 - 8519541
Alignment:
Q  14 gaatcagagacatactcaaataagtatgtcaaagtataagctataccagtatacgatagattgga 78  Q
    |||||||||||||||||| ||||||||||||||||||||| ||||| || |||||||| ||||||    
T  8519605 gaatcagagacatactcagataagtatgtcaaagtataagttatactagaatacgatatattgga 8519541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 144 - 196
Target Start/End: Original strand, 33301028 - 33301080
Alignment:
Q  144 atcaaaatagtatttcagacgacgattttattatcccctgatcactcagttat 196  Q
    ||||||||||||||||||||| ||||||||||||||||||||| |||||||||    
T  33301028 atcaaaatagtatttcagacggcgattttattatcccctgatcgctcagttat 33301080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 15 - 78
Target Start/End: Complemental strand, 28144718 - 28144655
Alignment:
Q  15 aatcagagacatactcaaataagtatgtcaaagtataagctataccagtatacgatagattgga 78  Q
    ||||||||||||||||| ||||| ||||||||||||||| |||||||| |||||||| ||||||    
T  28144718 aatcagagacatactcagataagcatgtcaaagtataagttataccagaatacgatatattgga 28144655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 144 - 196
Target Start/End: Complemental strand, 28144574 - 28144521
Alignment:
Q  144 atcaaaatagtatttcagacgacgatttta-ttatcccctgatcactcagttat 196  Q
    ||||||||||||||||||||  |||||||| ||||||||| ||| |||||||||    
T  28144574 atcaaaatagtatttcagacagcgattttagttatcccctaatcgctcagttat 28144521  T

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Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 144 - 196
Target Start/End: Original strand, 34256092 - 34256145
Alignment:
Q  144 atcaaaatagtatttcagacgacgatttta-ttatcccctgatcactcagttat 196  Q
    ||||||||||||||||||||  | |||||| ||||||||||||| |||||||||    
T  34256092 atcaaaatagtatttcagacagcaattttagttatcccctgatcgctcagttat 34256145  T

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Target: scaffold0046 (Bit Score: 54; Significance: 3e-22; HSPs: 1)
Name: scaffold0046
Description:

Target: scaffold0046; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 90160 - 90095
Alignment:
Q  14 gaatcagagacatactcaaataagtatgtcaaagtataagctataccagtatacgatagattggac 79  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |||||||    
T  90160 gaatcagagacatactcagataagtatgtcaaagtataagctataccagaatacgatatattggac 90095  T

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Target: chr7 (Bit Score: 53; Significance: 1e-21; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 42786255 - 42786319
Alignment:
Q  14 gaatcagagacatactcaaataagtatgtcaaagtataagctataccagtatacgatagattgga 78  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||    
T  42786255 gaatcagagacatactcaaataagtatgtcaaagtataagctatactagaatacgatatattgga 42786319  T

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Target: chr7; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 48477698 - 48477634
Alignment:
Q  14 gaatcagagacatactcaaataagtatgtcaaagtataagctataccagtatacgatagattgga 78  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||    
T  48477698 gaatcagagacatactcaaataagtatgtcaaagtataagctatactagaatacgatatattgga 48477634  T

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Target: chr7; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 4340873 - 4340809
Alignment:
Q  14 gaatcagagacatactcaaataagtatgtcaaagtataagctataccagtatacgatagattgga 78  Q
    |||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||| ||||||    
T  4340873 gaatcagagacatactcagataagtatgtcaaagtataagttataccagaatacgatatattgga 4340809  T

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Target: chr7; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 19802580 - 19802516
Alignment:
Q  14 gaatcagagacatactcaaataagtatgtcaaagtataagctataccagtatacgatagattgga 78  Q
    |||||||||||||||||| ||||||||||||||||||||||||||| || |||||||| ||||||    
T  19802580 gaatcagagacatactcagataagtatgtcaaagtataagctatactagaatacgatatattgga 19802516  T

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Target: chr7; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 15 - 78
Target Start/End: Original strand, 21958966 - 21959029
Alignment:
Q  15 aatcagagacatactcaaataagtatgtcaaagtataagctataccagtatacgatagattgga 78  Q
    ||||||||||||||| | ||||||||||||||||||||| |||||||| |||||||| ||||||    
T  21958966 aatcagagacatacttagataagtatgtcaaagtataagttataccagaatacgatatattgga 21959029  T

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Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 144 - 196
Target Start/End: Original strand, 21959109 - 21959162
Alignment:
Q  144 atcaaaatagtatttcagacgacgatttta-ttatcccctgatcactcagttat 196  Q
    ||||||||||||||||||||| |||||||| ||||||||||||| |||||||||    
T  21959109 atcaaaatagtatttcagacggcgattttagttatcccctgatcgctcagttat 21959162  T

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Target: chr4 (Bit Score: 53; Significance: 1e-21; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 5908829 - 5908765
Alignment:
Q  14 gaatcagagacatactcaaataagtatgtcaaagtataagctataccagtatacgatagattgga 78  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||    
T  5908829 gaatcagagacatactcaaataagtatgtcaaagtataagctatactagaatacgatatattgga 5908765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 1505668 - 1505604
Alignment:
Q  14 gaatcagagacatactcaaataagtatgtcaaagtataagctataccagtatacgatagattgga 78  Q
    |||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||| ||||||    
T  1505668 gaatcagagacatactcagataagtatgtcaaagtataagttataccagaatacgatatattgga 1505604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 5599549 - 5599485
Alignment:
Q  14 gaatcagagacatactcaaataagtatgtcaaagtataagctataccagtatacgatagattgga 78  Q
    |||||| ||||||||||| ||||||||||||||||||||||||||| || |||||||| ||||||    
T  5599549 gaatcaaagacatactcagataagtatgtcaaagtataagctatactagaatacgatatattgga 5599485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 5578867 - 5578926
Alignment:
Q  19 agagacatactcaaataagtatgtcaaagtataagctataccagtatacgatagattgga 78  Q
    ||||||||||||| ||||||||||||||||||||| |||||||| |||||||| ||||||    
T  5578867 agagacatactcagataagtatgtcaaagtataagttataccagaatacgatatattgga 5578926  T

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Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 13702270 - 13702210
Alignment:
Q  18 cagagacatactcaaataagtatgtcaaagtataagctataccagtatacgatagattgga 78  Q
    |||||||||||||| ||||||||||||||||||||| ||||| || |||||||| ||||||    
T  13702270 cagagacatactcagataagtatgtcaaagtataagttatactagaatacgatatattgga 13702210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 13712763 - 13712703
Alignment:
Q  18 cagagacatactcaaataagtatgtcaaagtataagctataccagtatacgatagattgga 78  Q
    |||||||||||||| ||||||||||||||||||||| ||||| || |||||||| ||||||    
T  13712763 cagagacatactcagataagtatgtcaaagtataagttatactagaatacgatatattgga 13712703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 4852279 - 4852214
Alignment:
Q  14 gaatcagagacatactcaaataagtatgtcaaagtataagctataccagtatacgatagattggac 79  Q
    |||||||||||||||  | ||||||||||||||||||||||||| |||| |||| ||| |||||||    
T  4852279 gaatcagagacatacgtagataagtatgtcaaagtataagctatcccagaatacaatatattggac 4852214  T

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Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 196
Target Start/End: Original strand, 5579007 - 5579060
Alignment:
Q  144 atcaaaatagtatttcagacgacgatttta-ttatcccctgatcactcagttat 196  Q
    ||||||||||||||||||||  |||||||| ||||||||||||| |||||||||    
T  5579007 atcaaaatagtatttcagacagcgattttagttatcccctgatcgctcagttat 5579060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 196
Target Start/End: Complemental strand, 5599434 - 5599383
Alignment:
Q  144 atcaaaatagtatttcagacgacgattttattatcccctgatcactcagttat 196  Q
    ||||||||||||||||| ||| |||||||||||| |||||||| |||||||||    
T  5599434 atcaaaatagtatttcaaacggcgattttattat-ccctgatcgctcagttat 5599383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 5e-18; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 15 - 69
Target Start/End: Complemental strand, 5557454 - 5557400
Alignment:
Q  15 aatcagagacatactcaaataagtatgtcaaagtataagctataccagtatacga 69  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||    
T  5557454 aatcagagacatactcagataagtatgtcaaagtataagctataccagaatacga 5557400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 76
Target Start/End: Original strand, 20810774 - 20810836
Alignment:
Q  14 gaatcagagacatactcaaataagtatgtcaaagtataagctataccagtatacgatagattg 76  Q
    |||| ||| ||||||||| |||||||||||||||||||||||||||||| |||||||| ||||    
T  20810774 gaattagatacatactcagataagtatgtcaaagtataagctataccagaatacgatatattg 20810836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 196
Target Start/End: Complemental strand, 5557309 - 5557256
Alignment:
Q  144 atcaaaatagtatttcagacgacgatttta-ttatcccctgatcactcagttat 196  Q
    ||||||||||||||||||||  |||||||| ||||||||||||| |||||||||    
T  5557309 atcaaaatagtatttcagacagcgattttagttatcccctgatcgctcagttat 5557256  T

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Target: scaffold0158 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: scaffold0158
Description:

Target: scaffold0158; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 37199 - 37263
Alignment:
Q  14 gaatcagagacatactcaaataagtatgtcaaagtataagctataccagtatacgatagattgga 78  Q
    |||||||||||||||| | ||||||||||||||||||||||||||| || |||||||| ||||||    
T  37199 gaatcagagacatacttagataagtatgtcaaagtataagctatactagaatacgatatattgga 37263  T

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Target: chr3 (Bit Score: 45; Significance: 8e-17; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 14521403 - 14521467
Alignment:
Q  14 gaatcagagacatactcaaataagtatgtcaaagtataagctataccagtatacgatagattgga 78  Q
    ||||||||||||||| || ||||||||||||||||||||||||||| || |||||||| ||||||    
T  14521403 gaatcagagacatacccagataagtatgtcaaagtataagctatactagaatacgatatattgga 14521467  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 196
Target Start/End: Original strand, 19359769 - 19359822
Alignment:
Q  144 atcaaaatagtatttcagacgacgatttta-ttatcccctgatcactcagttat 196  Q
    ||||||||||||||||||||  |||||||| ||||||||||||| |||||||||    
T  19359769 atcaaaatagtatttcagacagcgattttagttatcccctgatcgctcagttat 19359822  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 144 - 196
Target Start/End: Original strand, 14521548 - 14521601
Alignment:
Q  144 atcaaaatagtatttcagacgacgatttta-ttatcccctgatcactcagttat 196  Q
    ||||||||||||||||||||  |||||||| ||||||||||||  |||||||||    
T  14521548 atcaaaatagtatttcagacagcgattttagttatcccctgatagctcagttat 14521601  T

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Target: chr1 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 14115301 - 14115364
Alignment:
Q  16 atcagagacatactcaaataagtatgtcaaagtataagctataccagtatacgatagattggac 79  Q
    |||||||||||||  | |||||||||||||||||||||||||||||| |||||||| |||||||    
T  14115301 atcagagacatacgtagataagtatgtcaaagtataagctataccagaatacgatatattggac 14115364  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 15 - 69
Target Start/End: Complemental strand, 41528208 - 41528154
Alignment:
Q  15 aatcagagacatactcaaataagtatgtcaaagtataagctataccagtatacga 69  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||| || ||||||    
T  41528208 aatcagagacatactcagataagtatgtcaaagtaaaagctatactagaatacga 41528154  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 196
Target Start/End: Complemental strand, 41528063 - 41528010
Alignment:
Q  144 atcaaaatagtatttcagacgacgatttta-ttatcccctgatcactcagttat 196  Q
    ||||||||||||||||||||  |||||||| ||||||||||||| |||||||||    
T  41528063 atcaaaatagtatttcagacagcgattttagttatcccctgatcgctcagttat 41528010  T

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