View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2631_low_3 (Length: 528)

Name: NF2631_low_3
Description: NF2631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2631_low_3
NF2631_low_3
[»] chr5 (6 HSPs)
chr5 (13-513)||(15434011-15434505)
chr5 (13-106)||(900885-900978)
chr5 (13-105)||(2250327-2250419)
chr5 (47-109)||(30839716-30839778)
chr5 (13-54)||(30839962-30840003)
chr5 (13-106)||(8317381-8317474)
[»] chr6 (10 HSPs)
chr6 (13-107)||(29396443-29396537)
chr6 (13-105)||(18141383-18141475)
chr6 (13-101)||(22956984-22957072)
chr6 (13-101)||(23831320-23831408)
chr6 (13-99)||(22995981-22996065)
chr6 (13-99)||(23792335-23792419)
chr6 (22-101)||(21203302-21203381)
chr6 (24-105)||(9961216-9961297)
chr6 (13-76)||(7045191-7045254)
chr6 (24-79)||(33029650-33029705)
[»] chr7 (4 HSPs)
chr7 (13-107)||(38174619-38174713)
chr7 (13-109)||(45849487-45849584)
chr7 (16-105)||(6494744-6494833)
chr7 (48-92)||(44732493-44732537)
[»] chr3 (5 HSPs)
chr3 (13-105)||(26847736-26847828)
chr3 (14-108)||(2043729-2043823)
chr3 (241-317)||(8184848-8184924)
chr3 (13-106)||(40034727-40034820)
chr3 (50-101)||(25288789-25288840)
[»] chr1 (4 HSPs)
chr1 (13-106)||(9388560-9388653)
chr1 (13-106)||(10366565-10366658)
chr1 (50-101)||(16752331-16752382)
chr1 (38-106)||(52547957-52548025)
[»] chr2 (2 HSPs)
chr2 (13-109)||(33538172-33538268)
chr2 (13-80)||(40611590-40611657)
[»] chr4 (7 HSPs)
chr4 (13-104)||(3684733-3684824)
chr4 (13-76)||(33152512-33152575)
chr4 (47-105)||(2728256-2728314)
chr4 (24-105)||(45283151-45283232)
chr4 (48-101)||(48150556-48150609)
chr4 (13-45)||(2728602-2728634)
chr4 (50-106)||(12842278-12842334)
[»] chr8 (3 HSPs)
chr8 (22-101)||(37819877-37819956)
chr8 (59-106)||(24511975-24512022)
chr8 (58-103)||(36796082-36796127)


Alignment Details
Target: chr5 (Bit Score: 413; Significance: 0; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 13 - 513
Target Start/End: Complemental strand, 15434505 - 15434011
Alignment:
Q  13 gaggagcacagaaatcgaaatcaagcaaaatatcattaaaaatagcaaataagttgttggttgtacaatttggttgttcacatatcattcctctattgga 112  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15434505 gaggagcacagaaatcaaaatcaagcaaaatatcattaaaagtagcaaataagttgttggttgtacaatttggttgttcacatatcattcctctattgga 15434406  T
Q  113 tttggcatttcaacctgttacaagtttcttttacaatcatgtcaactatttatggtggttgatcaatttttcgtctagcgatgtttcgctacataaccag 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  15434405 tttggcatttcaacctgttacaagtttcttttacaatcatgtcaactatttatggtggttgatcaatttttcgtctagcgatgtttcgctacataaccac 15434306  T
Q  213 agaaagcatgcctgagcagagtatgcatggtaatggaaatggaaagtatgacagtacgcacaatgcagctgcaaagtaatatgttacaacaatcagaatg 312  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||   |||||||||||||||||||||    
T  15434305 agaaagcatccctgagcagagtatgcatggtaatggaaatggaaagtatgacagtacacacaatgcagctgcaaag---tatgttacaacaatcagaatg 15434209  T
Q  313 acatacaaaaacaaggaaaacagcagagtcgtgaaaaaagtaattaacaaatgttcatctcttatatattatattcatcgaannnnnnnnnnnnnnnatg 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||               |||    
T  15434208 acatacaaaaacaaggaaaacagcagagtcgtgaaaaaagtaattaacaaatgttcatctcttatatattatattcatcgaa---ttttttttttttatg 15434112  T
Q  413 aaatagggaaaattttcctaattgatatcatacaatacagtggcgtatggatccaccagaaaatttaaacgttataaaatacaaatagtatagacaaaat 512  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  15434111 aaatagggaaaattttcctaattgatatcatacaatacagtggcgtatggatccaccagaaaatttaaaagttataaaatacaaatagtatagacaaaat 15434012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 13 - 106
Target Start/End: Complemental strand, 900978 - 900885
Alignment:
Q  13 gaggagcacagaaatcgaaatcaagcaaaatatcattaaaaatagcaaataagttgttggttgtacaatttggttgttcacatatcattcctct 106  Q
    ||||||||  |||| | |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  900978 gaggagcatggaaaacaaaatcatgcaaaatatcattaaaaatagcaaataagttgttggttgtacaatttggttgttcacatatcattcctct 900885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 13 - 105
Target Start/End: Complemental strand, 2250419 - 2250327
Alignment:
Q  13 gaggagcacagaaatcgaaatcaagcaaaatatcattaaaaatagcaaataagttgttggttgtacaatttggttgttcacatatcattcctc 105  Q
    |||||| || |||||| |||||| ||||||||||||||||||||  |||||| |||||| |||||||||||| || |||||||||||||||||    
T  2250419 gaggagtacggaaatcaaaatcatgcaaaatatcattaaaaataataaataaattgttgattgtacaatttgattcttcacatatcattcctc 2250327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 47 - 109
Target Start/End: Complemental strand, 30839778 - 30839716
Alignment:
Q  47 attaaaaatagcaaataagttgttggttgtacaatttggttgttcacatatcattcctctatt 109  Q
    |||||||||||||| ||| |||||||| ||||||||| |||||||||||||||||||||||||    
T  30839778 attaaaaatagcaagtaaattgttggtcgtacaatttagttgttcacatatcattcctctatt 30839716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 13 - 54
Target Start/End: Complemental strand, 30840003 - 30839962
Alignment:
Q  13 gaggagcacagaaatcgaaatcaagcaaaatatcattaaaaa 54  Q
    |||||| |||||||||||||||||||||||||| ||||||||    
T  30840003 gaggagtacagaaatcgaaatcaagcaaaatattattaaaaa 30839962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 106
Target Start/End: Original strand, 8317381 - 8317474
Alignment:
Q  13 gaggagcacagaaatcgaaatcaagcaaaatatcattaaaaatagcaaataagttgttggttgtacaatttggttgttcacatatcattcctct 106  Q
    |||||||||  ||||| ||||||   |||||||  | |||||||||||| ||||||||||||||||||    | |||||| |||||||||||||    
T  8317381 gaggagcacgcaaatcaaaatcagtaaaaatatattaaaaaatagcaaaaaagttgttggttgtacaaaaatgatgttcaaatatcattcctct 8317474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 83; Significance: 4e-39; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 13 - 107
Target Start/End: Complemental strand, 29396537 - 29396443
Alignment:
Q  13 gaggagcacagaaatcgaaatcaagcaaaatatcattaaaaatagcaaataagttgttggttgtacaatttggttgttcacatatcattcctcta 107  Q
    |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  29396537 gaggagcacaaaaatcgaaatcaatcaaaatatcattaaaaatagcaaataagttgttggttgtacaatttggctgttcacatatcattcctcta 29396443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 13 - 105
Target Start/End: Complemental strand, 18141475 - 18141383
Alignment:
Q  13 gaggagcacagaaatcgaaatcaagcaaaatatcattaaaaatagcaaataagttgttggttgtacaatttggttgttcacatatcattcctc 105  Q
    |||||| ||| |||||||||||||| ||||||| ||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||    
T  18141475 gaggagtacataaatcgaaatcaagtaaaatattattaaaaatagaaaataagttgctggttgtacgatttggttgttcacatatcattcctc 18141383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 13 - 101
Target Start/End: Complemental strand, 22957072 - 22956984
Alignment:
Q  13 gaggagcacagaaatcgaaatcaagcaaaatatcattaaaaatagcaaataagttgttggttgtacaatttggttgttcacatatcatt 101  Q
    |||||||||| |||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||| || ||||||||||    
T  22957072 gaggagcacataaatcgaaatcaagtaaaatattattaaaaatagcaagtaagttgttggttgtacaatttggttatttacatatcatt 22956984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 13 - 101
Target Start/End: Original strand, 23831320 - 23831408
Alignment:
Q  13 gaggagcacagaaatcgaaatcaagcaaaatatcattaaaaatagcaaataagttgttggttgtacaatttggttgttcacatatcatt 101  Q
    |||||||||| |||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||| || ||||||||||    
T  23831320 gaggagcacataaatcgaaatcaagtaaaatattattaaaaatagcaagtaagttgttggttgtacaatttggttatttacatatcatt 23831408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 13 - 99
Target Start/End: Complemental strand, 22996065 - 22995981
Alignment:
Q  13 gaggagcacagaaatcgaaatcaagcaaaatatcattaaaaatagcaaataagttgttggttgtacaatttggttgttcacatatca 99  Q
    |||||||||| |||||||||||| ||||||||| ||||||||||||||  |||||||||||| ||||||||||||||||||||||||    
T  22996065 gaggagcacataaatcgaaatcaggcaaaatattattaaaaatagcaa--aagttgttggttatacaatttggttgttcacatatca 22995981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 13 - 99
Target Start/End: Original strand, 23792335 - 23792419
Alignment:
Q  13 gaggagcacagaaatcgaaatcaagcaaaatatcattaaaaatagcaaataagttgttggttgtacaatttggttgttcacatatca 99  Q
    |||||||||| |||||||||||| ||||||||| ||||||||||||||  |||||||||||| ||||||||||||||||||||||||    
T  23792335 gaggagcacataaatcgaaatcaggcaaaatattattaaaaatagcaa--aagttgttggttatacaatttggttgttcacatatca 23792419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 22 - 101
Target Start/End: Original strand, 21203302 - 21203381
Alignment:
Q  22 agaaatcgaaatcaagcaaaatatcattaaaaatagcaaataagttgttggttgtacaatttggttgttcacatatcatt 101  Q
    ||||||| ||||||||||||| || |||||||||| ||| |||||||||| |||||||||||||||||||||||||||||    
T  21203302 agaaatcaaaatcaagcaaaacattattaaaaatatcaagtaagttgttgattgtacaatttggttgttcacatatcatt 21203381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 24 - 105
Target Start/End: Original strand, 9961216 - 9961297
Alignment:
Q  24 aaatcgaaatcaagcaaaatatcattaaaaatagcaaataagttgttggttgtacaatttggttgttcacatatcattcctc 105  Q
    ||||||||||||| ||||| ||  | |||||||||||||||||||||||||||||||    | |||||||||||||||||||    
T  9961216 aaatcgaaatcaatcaaaaaatattaaaaaatagcaaataagttgttggttgtacaaacgagatgttcacatatcattcctc 9961297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 76
Target Start/End: Original strand, 7045191 - 7045254
Alignment:
Q  13 gaggagcacagaaatcgaaatcaagcaaaatatcattaaaaatagcaaataagttgttggttgt 76  Q
    |||||||||||||||| || |||| ||||||||  |||||||||| |||| | |||||||||||    
T  7045191 gaggagcacagaaatcaaattcaaacaaaatatatttaaaaatagtaaatgaattgttggttgt 7045254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 33029705 - 33029650
Alignment:
Q  24 aaatcgaaatcaagcaaaatatcattaaaa-atagcaaataagttgttggttgtaca 79  Q
    ||||||||||||| ||||| || ||||||| |||||| |||||||||||||||||||    
T  33029705 aaatcgaaatcaatcaaaaaat-attaaaacatagcagataagttgttggttgtaca 33029650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 3e-34; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 13 - 107
Target Start/End: Complemental strand, 38174713 - 38174619
Alignment:
Q  13 gaggagcacagaaatcgaaatcaagcaaaatatcattaaaaatagcaaataagttgttggttgtacaatttggttgttcacatatcattcctcta 107  Q
    ||||||||||||||||||||||||||||||||| |||||||||| ||| |||||| ||||||||||||||||||||||||| |||||||||||||    
T  38174713 gaggagcacagaaatcgaaatcaagcaaaatattattaaaaatatcaagtaagttattggttgtacaatttggttgttcacgtatcattcctcta 38174619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 13 - 109
Target Start/End: Original strand, 45849487 - 45849584
Alignment:
Q  13 gaggagcacagaaatcgaaa-tcaagcaaaatatcattaaaaatagcaaataagttgttggttgtacaatttggttgttcacatatcattcctctatt 109  Q
    |||||||||| |||| |||| ||||||||||||| |||||||||||||||||| || ||||||||||||||||||||||||| |||||||||||||||    
T  45849487 gaggagcacataaattgaaaatcaagcaaaatattattaaaaatagcaaataaattattggttgtacaatttggttgttcacgtatcattcctctatt 45849584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 16 - 105
Target Start/End: Complemental strand, 6494833 - 6494744
Alignment:
Q  16 gagcacagaaatcgaaatcaagcaaaatatcattaaaaatagcaaataagttgttggttgtacaatttggttgttcacatatcattcctc 105  Q
    |||||| |||| | |||||| ||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||    
T  6494833 gagcacggaaaacaaaatcatgcaaaatatcattaaaaatagcaaataagttattgattgtacaattttgttgttcacatatcattcctc 6494744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 48 - 92
Target Start/End: Original strand, 44732493 - 44732537
Alignment:
Q  48 ttaaaaatagcaaataagttgttggttgtacaatttggttgttca 92  Q
    ||||||||| |||||||||| |||||||||||| ||| |||||||    
T  44732493 ttaaaaataacaaataagttattggttgtacaaattgattgttca 44732537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 4e-33; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 13 - 105
Target Start/End: Original strand, 26847736 - 26847828
Alignment:
Q  13 gaggagcacagaaatcgaaatcaagcaaaatatcattaaaaatagcaaataagttgttggttgtacaatttggttgttcacatatcattcctc 105  Q
    ||||||||| |||| | |||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  26847736 gaggagcacggaaaacaaaatcatgcaaaatatcattaaaaatagcaaataagttgttggttgtacaatttgattgttcacatatcattcctc 26847828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 14 - 108
Target Start/End: Complemental strand, 2043823 - 2043729
Alignment:
Q  14 aggagcacagaaatcgaaatcaagcaaaatatcattaaaaatagcaaataagttgttggttgtacaatttggttgttcacatatcattcctctat 108  Q
    ||||||||| ||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| ||| || |||||||||||||||||    
T  2043823 aggagcacataaatcgaaatcaatcaaaatatcattaaagatagcaaataagttgttggttgtacaatttagttatttacatatcattcctctat 2043729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 241 - 317
Target Start/End: Original strand, 8184848 - 8184924
Alignment:
Q  241 ggtaatggaaatggaaagtatgacagtacgcacaatgcagctgcaaagtaatatgttacaacaatcagaatgacata 317  Q
    ||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||| |||||| |||||||||||||    
T  8184848 ggtaatggaaatggaaagtgtgacagtacacacaatgcagctgcaaaataatatgtcacaacagtcagaatgacata 8184924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 13 - 106
Target Start/End: Complemental strand, 40034820 - 40034727
Alignment:
Q  13 gaggagcacagaaatcgaaatcaagcaaaatatcattaaaaatagcaaataagttgttggttgtacaatttggttgttcacatatcattcctct 106  Q
    ||||||||| |||||  |||||| | ||||||| ||||||||||  ||||||||||||||||||||||||||  ||||||||||||||| ||||    
T  40034820 gaggagcacggaaattaaaatcatgtaaaatattattaaaaataataaataagttgttggttgtacaatttgaatgttcacatatcatttctct 40034727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 101
Target Start/End: Complemental strand, 25288840 - 25288789
Alignment:
Q  50 aaaaatagcaaataagttgttggttgtacaatttggttgttcacatatcatt 101  Q
    |||||||| |||||| |||||||||||||||||  |||||||||| ||||||    
T  25288840 aaaaatagtaaataaattgttggttgtacaattatgttgttcacaaatcatt 25288789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 3e-31; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 13 - 106
Target Start/End: Complemental strand, 9388653 - 9388560
Alignment:
Q  13 gaggagcacagaaatcgaaatcaagcaaaatatcattaaaaatagcaaataagttgttggttgtacaatttggttgttcacatatcattcctct 106  Q
    |||||||||| ||||||||||||  |||||||||||||||||||| |||||||||||||||||||||||||  |||||||||||||||||||||    
T  9388653 gaggagcacataaatcgaaatcagacaaaatatcattaaaaatagtaaataagttgttggttgtacaatttaattgttcacatatcattcctct 9388560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 13 - 106
Target Start/End: Complemental strand, 10366658 - 10366565
Alignment:
Q  13 gaggagcacagaaatcgaaatcaagcaaaatatcattaaaaatagcaaataagttgttggttgtacaatttggttgttcacatatcattcctct 106  Q
    |||||||||| |||||||||||||  |||||||||||||||||| ||||||||||||||||||||||||||| |||||||| ||||||||||||    
T  10366658 gaggagcacataaatcgaaatcaaataaaatatcattaaaaataacaaataagttgttggttgtacaatttgattgttcacgtatcattcctct 10366565  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 101
Target Start/End: Original strand, 16752331 - 16752382
Alignment:
Q  50 aaaaatagcaaataagttgttggttgtacaatttggttgttcacatatcatt 101  Q
    ||||||||||| ||||||||||||||||||| |  | |||||||||||||||    
T  16752331 aaaaatagcaagtaagttgttggttgtacaaatgtgatgttcacatatcatt 16752382  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 38 - 106
Target Start/End: Complemental strand, 52548025 - 52547957
Alignment:
Q  38 caaaatatcattaaaaatagcaaataagttgttggttgtacaatttggttgttcacatatcattcctct 106  Q
    ||||||||  ||| |||||  ||| |||||||| ||||||||| |||||||||||| ||||||| ||||    
T  52548025 caaaatatatttataaatataaaacaagttgttcgttgtacaaattggttgttcacgtatcatttctct 52547957  T

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Target: chr2 (Bit Score: 69; Significance: 1e-30; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 13 - 109
Target Start/End: Complemental strand, 33538268 - 33538172
Alignment:
Q  13 gaggagcacagaaatcgaaatcaagcaaaatatcattaaaaatagcaaataagttgttggttgtacaatttggttgttcacatatcattcctctatt 109  Q
    |||||| || |||||| |||||| ||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||||||||||||||||    
T  33538268 gaggagtacggaaatcaaaatcatgcaaaatatcattaaaaatagtaaataagttgttggttgtacaatttgatttttcacatatcattcctctatt 33538172  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 80
Target Start/End: Complemental strand, 40611657 - 40611590
Alignment:
Q  13 gaggagcacagaaatcgaaatcaagcaaaatatcattaaaaatagcaaataagttgttggttgtacaa 80  Q
    |||||||||  ||||| |||||||  |||||||  | |||||||||||| ||||||||||||||||||    
T  40611657 gaggagcacgcaaatcaaaatcaataaaaatatattaaaaaatagcaaaaaagttgttggttgtacaa 40611590  T

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Target: chr4 (Bit Score: 56; Significance: 6e-23; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 13 - 104
Target Start/End: Complemental strand, 3684824 - 3684733
Alignment:
Q  13 gaggagcacagaaatcgaaatcaagcaaaatatcattaaaaatagcaaataagttgttggttgtacaatttggttgttcacatatcattcct 104  Q
    |||||||||| ||||||||||||  |||||||| |||||||||||||||||  ||||||||| |||||||| ||||||||||||| ||||||    
T  3684824 gaggagcacaaaaatcgaaatcagacaaaatattattaaaaatagcaaatatattgttggttttacaatttagttgttcacatattattcct 3684733  T

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Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 13 - 76
Target Start/End: Original strand, 33152512 - 33152575
Alignment:
Q  13 gaggagcacagaaatcgaaatcaagcaaaatatcattaaaaatagcaaataagttgttggttgt 76  Q
    ||||||||| |||||| |||||| ||||||||||||||||||||||||||||||||||||||||    
T  33152512 gaggagcacggaaatcaaaatcatgcaaaatatcattaaaaatagcaaataagttgttggttgt 33152575  T

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Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 47 - 105
Target Start/End: Complemental strand, 2728314 - 2728256
Alignment:
Q  47 attaaaaatagcaaataagttgttggttgtacaatttggttgttcacatatcattcctc 105  Q
    |||||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||    
T  2728314 attaaaaatagcaagtaagttgttggttgtataatttagttgttcacatatcattcctc 2728256  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 105
Target Start/End: Original strand, 45283151 - 45283232
Alignment:
Q  24 aaatcgaaatcaagcaaaatatcattaaaaatagcaaataagttgttggttgtacaatttggttgttcacatatcattcctc 105  Q
    |||||||||||||  |||| ||  | |||||||| |||||||||| ||||| ||||| |  | |||||||||||||||||||    
T  45283151 aaatcgaaatcaataaaaaaatattaaaaaatagaaaataagttgctggttttacaaatgagatgttcacatatcattcctc 45283232  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 48 - 101
Target Start/End: Complemental strand, 48150609 - 48150556
Alignment:
Q  48 ttaaaaatagcaaataagttgttggttgtacaatttggttgttcacatatcatt 101  Q
    |||||||||||||||||||||| |||||||||| |  | |||||||| ||||||    
T  48150609 ttaaaaatagcaaataagttgtcggttgtacaaatgagatgttcacaaatcatt 48150556  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 2728634 - 2728602
Alignment:
Q  13 gaggagcacagaaatcgaaatcaagcaaaatat 45  Q
    |||||||||| ||||||||||||||||||||||    
T  2728634 gaggagcacataaatcgaaatcaagcaaaatat 2728602  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 50 - 106
Target Start/End: Complemental strand, 12842334 - 12842278
Alignment:
Q  50 aaaaatagcaaataagttgttggttgtacaatttggttgttcacatatcattcctct 106  Q
    |||||||||||| ||||||||||||||||||    | |||||| |||||||||||||    
T  12842334 aaaaatagcaaagaagttgttggttgtacaaaaatgatgttcatatatcattcctct 12842278  T

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Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 22 - 101
Target Start/End: Original strand, 37819877 - 37819956
Alignment:
Q  22 agaaatcgaaatcaagcaaaatatcattaaaaatagcaaataagttgttggttgtacaatttggttgttcacatatcatt 101  Q
    ||||||||||||||   ||||||| |||||| ||||||||||| |||||||||||||||||| |||||||| ||||||||    
T  37819877 agaaatcgaaatcagataaaatattattaaacatagcaaataaattgttggttgtacaatttagttgttcaaatatcatt 37819956  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 59 - 106
Target Start/End: Complemental strand, 24512022 - 24511975
Alignment:
Q  59 aaataagttgttggttgtacaatttggttgttcacatatcattcctct 106  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||    
T  24512022 aaataagttgttggttgtacaatttggttgttcagatatcattcctct 24511975  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 103
Target Start/End: Complemental strand, 36796127 - 36796082
Alignment:
Q  58 caaataagttgttggttgtacaatttggttgttcacatatcattcc 103  Q
    |||||||||||||||||||| ||||| ||||||||| ||| |||||    
T  36796127 caaataagttgttggttgtataatttagttgttcacctataattcc 36796082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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