View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2631_low_5 (Length: 426)
Name: NF2631_low_5
Description: NF2631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2631_low_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 40 - 413
Target Start/End: Complemental strand, 23414546 - 23414161
Alignment:
| Q |
40 |
caggaacaatacaatatggagtttcctctagccaaactcta------------ttaggctcttaaagggcataatgggccagcttataggccactgtatt |
127 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23414546 |
caggaacaatacaatttggagtttcctctagccaaactctattagaaactctattaggctctgaaagggcataatgggccagcttataggccactgtatt |
23414447 |
T |
|
| Q |
128 |
gcctttgcctattctattgatatgactaaacctacactcttcaaaatagtgaagattttgctgataccatttacaaaactaccaacataattcctaggag |
227 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23414446 |
gcctttgcctattctattgatatgactaaacctacactcttcaaaatagtgaagattttgctgataccatttacaaaactaccaacataattcctaggag |
23414347 |
T |
|
| Q |
228 |
tctctacctcttcctttagaatctaaaccaatttctcacagtcagattccagaattattttcctgaaacaacattcagctgcaaacttgacagttttata |
327 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23414346 |
tctctacctcttcctttagaatctaaaccaatttctcacagtcagattccagaattattttcctgaaacaacattcagctgcaaacttgacagttttata |
23414247 |
T |
|
| Q |
328 |
cctcgcatatacttccgcaactgtgaaatcatcgaagcccttgacagtccaggttgcagctgctaacacttcaccatcttcgtttc |
413 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23414246 |
cctcgcatatacctccgcaactgtgaaatcatcgaagcccttgacagtccaggttgcagctgctaacacttcaccatcttcgtttc |
23414161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University