View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2632_high_2 (Length: 238)
Name: NF2632_high_2
Description: NF2632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2632_high_2 |
 | |
|
| [»] scaffold0927 (1 HSPs) |
| | |
|
| [»] scaffold1126 (1 HSPs) |
| | |
|
| [»] scaffold1033 (1 HSPs) |
| | |
|
| [»] scaffold1029 (1 HSPs) |
| | |
|
| [»] scaffold0870 (1 HSPs) |
| | |
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Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 26314461 - 26314239
Alignment:
| Q |
1 |
gaagacgtccaaagacatgttgctcacatgatttcaaatgaatggaaacgtctcaatcaagaaattatggttgcaaatcagttttcatcatcattttcca |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |
|
|
| T |
26314461 |
gaagacgtgcaaagacatgttgctcacatgatttcaaatgaatggaaacgtctcaatcaagaaattctggttgcaaatcaattttcatcatcattttcca |
26314362 |
T |
|
| Q |
101 |
atttttgtctcaatgctgctagaatggttcccctcatgtaccactataagagcaacccaagcctctctaatctccaggaacatgtcaagtcattgattaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26314361 |
atttttgtctcaatgctgctagaatggttcccctcatgtaccactataagagcaatccaagcctctctaatctccaggaacatgtcaagtcattgattaa |
26314262 |
T |
|
| Q |
201 |
tgttagtggtgggtgcaattagt |
223 |
Q |
| |
|
|| |||||||||||||||||||| |
|
|
| T |
26314261 |
tgctagtggtgggtgcaattagt |
26314239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 28573314 - 28573092
Alignment:
| Q |
1 |
gaagacgtccaaagacatgttgctcacatgatttcaaatgaatggaaacgtctcaatcaagaaattatggttgcaaatcagttttcatcatcattttcca |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||||| |
|
|
| T |
28573314 |
gaagacgtgcaaagacatgttgctcacatgatttcaaatgaatggaaatgtctcaatcaagaaattctggttgcaaatcagttttcatcgtcattttcca |
28573215 |
T |
|
| Q |
101 |
atttttgtctcaatgctgctagaatggttcccctcatgtaccactataagagcaacccaagcctctctaatctccaggaacatgtcaagtcattgattaa |
200 |
Q |
| |
|
| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28573214 |
acttttgtctcaatgctgcaagaatggttcccctcatgtaccactataagagcaacccaagcctctctaatctccaggaacatgtcaagtcattgattaa |
28573115 |
T |
|
| Q |
201 |
tgttagtggtgggtgcaattagt |
223 |
Q |
| |
|
|||||||| |||||| ||||||| |
|
|
| T |
28573114 |
tgttagtgttgggtgtaattagt |
28573092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 28566569 - 28566347
Alignment:
| Q |
1 |
gaagacgtccaaagacatgttgctcacatgatttcaaatgaatggaaacgtctcaatcaagaaattatggttgcaaatcagttttcatcatcattttcca |
100 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
28566569 |
gaagacgtgcaacgacatgttgctcacatgatttcaaatgaatggaaatgtctcaatcaagaaattctggtcacaaatcagttttcatcatcattttcca |
28566470 |
T |
|
| Q |
101 |
atttttgtctcaatgctgctagaatggttcccctcatgtaccactataagagcaacccaagcctctctaatctccaggaacatgtcaagtcattgattaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||| |
|
|
| T |
28566469 |
atttttgtctcaatgctgctagaatggttcccctcatgtaccactataagagcaacccgagcctctctaatctccaggaacatgttaactcattgattaa |
28566370 |
T |
|
| Q |
201 |
tgttagtggtgggtgcaattagt |
223 |
Q |
| |
|
|||||||| |||||||||||||| |
|
|
| T |
28566369 |
tgttagtgttgggtgcaattagt |
28566347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 28584544 - 28584322
Alignment:
| Q |
1 |
gaagacgtccaaagacatgttgctcacatgatttcaaatgaatggaaacgtctcaatcaagaaattatggttgcaaatcagttttcatcatcattttcca |
100 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
28584544 |
gaagacgtgcaaggacatgttgctcacatgatttcaaatgaatggaaatttctcaatcaagaaattctggttgcaaatcagttttcatcatcattttcca |
28584445 |
T |
|
| Q |
101 |
atttttgtctcaatgctgctagaatggttcccctcatgtaccactataagagcaacccaagcctctctaatctccaggaacatgtcaagtcattgattaa |
200 |
Q |
| |
|
| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28584444 |
acttttgtctgaatgctgctagaatggttcccctcatgtaccactataagagcaaaccaagcctctctaatctccaggaacatgtcaagtcattgattaa |
28584345 |
T |
|
| Q |
201 |
tgttagtggtgggtgcaattagt |
223 |
Q |
| |
|
|||||||| |||||| ||||||| |
|
|
| T |
28584344 |
tgttagtgttgggtgtaattagt |
28584322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 20615234 - 20615035
Alignment:
| Q |
1 |
gaagacgtccaaagacatgttgctcacatgatttcaaatgaatggaaacgtctcaatcaagaaattatggttgcaaatcagttttcatcatcattttcca |
100 |
Q |
| |
|
||||| || ||||||||||||||| | ||||||| ||||||||||||| |||| |||||||||||| || || || ||| ||||||||||| ||| |
|
|
| T |
20615234 |
gaagatgtgcaaagacatgttgctgagatgattttaaatgaatggaaatgtctaaatcaagaaattttgaacccatatgtatttccatcatcatttacca |
20615135 |
T |
|
| Q |
101 |
atttttgtctcaatgctgctagaatggttcccctcatgtaccactataagagcaacccaagcctctctaatctccaggaacatgtcaagtcattgattaa |
200 |
Q |
| |
|
||||||| || |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
20615134 |
atttttgccttaatgctgctagaatggttcctctcatgtaccattataagagcaacccaagcctctctagtctaaaggaacatgtcaagtcattgattaa |
20615035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0927 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: scaffold0927
Description:
Target: scaffold0927; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 384 - 604
Alignment:
| Q |
1 |
gaagacgtccaaagacatgttgctcacatgatttcaaatgaatggaaacgtctcaatcaagaaattatggttgcaaatcagttttcatcatcattttcca |
100 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
384 |
gaagacgtgcaaacacatgttgctcacatgatttcaaatgaatggaaatgtctcaatcaagaaattatggtcgcaaatcagttttcatcatcattttcca |
483 |
T |
|
| Q |
101 |
atttttgtctcaatgctgctagaatggttcccctcatgtaccactataagagcaacccaagcctctctaatctccaggaacatgtcaagtcattgattaa |
200 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
484 |
atttttgtctgaatgctgctagaatggttcccctcatgtaccactataagagcaatccgagcctctctaatctccatgaacatgtcaagtcattgattaa |
583 |
T |
|
| Q |
201 |
tgttagtggtgggtgcaatta |
221 |
Q |
| |
|
|||||||| |||||||||||| |
|
|
| T |
584 |
tgttagtgttgggtgcaatta |
604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 167; Significance: 1e-89; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 24070006 - 24069784
Alignment:
| Q |
1 |
gaagacgtccaaagacatgttgctcacatgatttcaaatgaatggaaacgtctcaatcaagaaattatggttgcaaatcagttttcatcatcattttcca |
100 |
Q |
| |
|
||||| || |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |||| ||||| ||||||||||||||||||||| |
|
|
| T |
24070006 |
gaagaggtgcaaagacatgttgctcgcatgatttcaaatgaatggaaatgtctcaatcaagaaattctggtcacaaataagttttcatcatcattttcca |
24069907 |
T |
|
| Q |
101 |
atttttgtctcaatgctgctagaatggttcccctcatgtaccactataagagcaacccaagcctctctaatctccaggaacatgtcaagtcattgattaa |
200 |
Q |
| |
|
||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24069906 |
atttttgtctcaatgctgcaagaatggttctcctcatgtaccactataagagcaactcaagcctctctaatctccaggaacatgtcaagtcattgattaa |
24069807 |
T |
|
| Q |
201 |
tgttagtggtgggtgcaattagt |
223 |
Q |
| |
|
|||| ||| ||| |||||||||| |
|
|
| T |
24069806 |
tgttggtgttggatgcaattagt |
24069784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 24080730 - 24080952
Alignment:
| Q |
1 |
gaagacgtccaaagacatgttgctcacatgatttcaaatgaatggaaacgtctcaatcaagaaattatggttgcaaatcagttttcatcatcattttcca |
100 |
Q |
| |
|
|||||||| |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
24080730 |
gaagacgtgcaaagacatgttgctcgcatgatttcaaatgaatggaaatgtctcaatcaagaaattctggttgcaaataagttttcatcatcattttcca |
24080829 |
T |
|
| Q |
101 |
atttttgtctcaatgctgctagaatggttcccctcatgtaccactataagagcaacccaagcctctctaatctccaggaacatgtcaagtcattgattaa |
200 |
Q |
| |
|
|||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
24080830 |
atttttgtatcaatgctgcaagaatggttcccctcatgtaccactataagagcaaccctagcctatctaatctctaggaacatgtcaagttattgattaa |
24080929 |
T |
|
| Q |
201 |
tgttagtggtgggtgcaattagt |
223 |
Q |
| |
|
|||| ||| ||| |||||||||| |
|
|
| T |
24080930 |
tgttggtgttggatgcaattagt |
24080952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1126 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: scaffold1126
Description:
Target: scaffold1126; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 108 - 223
Target Start/End: Complemental strand, 2722 - 2607
Alignment:
| Q |
108 |
tctcaatgctgctagaatggttcccctcatgtaccactataagagcaacccaagcctctctaatctccaggaacatgtcaagtcattgattaatgttagt |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
2722 |
tctcaatgctgctagaatggttcccctcatgtaccactataagagcaatccaagcctctctaatctccaggaacatgtcaagtcattgattaatgctagt |
2623 |
T |
|
| Q |
208 |
ggtgggtgcaattagt |
223 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
2622 |
ggtgggtgcaattagt |
2607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1033 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: scaffold1033
Description:
Target: scaffold1033; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 106 - 204
Target Start/End: Original strand, 1 - 99
Alignment:
| Q |
106 |
tgtctcaatgctgctagaatggttcccctcatgtaccactataagagcaacccaagcctctctaatctccaggaacatgtcaagtcattgattaatgtt |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1 |
tgtctcaatgctgctagaatggttcccctcatgtaccactataagagcaatccaagcctctctaatctccaggaacatgtcaagtcattgattaatgtt |
99 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1029 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: scaffold1029
Description:
Target: scaffold1029; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 106 - 204
Target Start/End: Original strand, 1 - 99
Alignment:
| Q |
106 |
tgtctcaatgctgctagaatggttcccctcatgtaccactataagagcaacccaagcctctctaatctccaggaacatgtcaagtcattgattaatgtt |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1 |
tgtctcaatgctgctagaatggttcccctcatgtaccactataagagcaatccaagcctctctaatctccaggaacatgtcaagtcattgattaatgtt |
99 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 10 - 205
Target Start/End: Original strand, 2603159 - 2603357
Alignment:
| Q |
10 |
caaagacatgttgctcacatgatttcaaatgaatggaaacgtctcaatcaagaaattatggttgcaaatc---agttttcatcatcattttccaattttt |
106 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || | |||| ||||| ||||||||| |||| |||| |
|
|
| T |
2603159 |
caaagacatgttgctaacatgatttcaaatgaatggaaacgtctcaatcaagaaatcataaccccgaatccaattttttcgtcatcatttaccaaatttt |
2603258 |
T |
|
| Q |
107 |
gtctcaatgctgctagaatggttcccctcatgtaccactataagagcaacccaagcctctctaatctccaggaacatgtcaagtcattgattaatgtta |
205 |
Q |
| |
|
| || |||| ||| ||||||||||| |||||||| ||||| |||| || ||||| || || ||||| || || | ||||||||||||| ||||||||| |
|
|
| T |
2603259 |
gccttaatgttgcaagaatggttcctctcatgtatcactaccagagtaatccaagtctttccaatctacaagaccttgtcaagtcattggttaatgtta |
2603357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 10 - 65
Target Start/End: Original strand, 2600009 - 2600064
Alignment:
| Q |
10 |
caaagacatgttgctcacatgatttcaaatgaatggaaacgtctcaatcaagaaat |
65 |
Q |
| |
|
||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
2600009 |
caaaggcatgttgctaacatgatttcaaatgaatggaaacgtctcaaacaagaaat |
2600064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 10 - 63
Target Start/End: Original strand, 2591875 - 2591928
Alignment:
| Q |
10 |
caaagacatgttgctcacatgatttcaaatgaatggaaacgtctcaatcaagaa |
63 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
2591875 |
caaaggcatgttgctcatatgatttcaaatgaatggaaacgtctgaatcaagaa |
2591928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0870 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0870
Description:
Target: scaffold0870; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 157 - 223
Target Start/End: Original strand, 1 - 67
Alignment:
| Q |
157 |
ccaagcctctctaatctccaggaacatgtcaagtcattgattaatgttagtggtgggtgcaattagt |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||| ||||||||| |
|
|
| T |
1 |
ccaagcctctctaatctccaggaacatgtcaagtcattgattaacgttggtgttggacgcaattagt |
67 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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