View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2633_high_5 (Length: 251)
Name: NF2633_high_5
Description: NF2633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2633_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 13 - 236
Target Start/End: Original strand, 50120063 - 50120286
Alignment:
| Q |
13 |
aatatgagcctcgtagtttagtgtgtaaaaatagggtagaagcttatacctcatccccaaggcatttctagctgattcagctactgactcccattggtaa |
112 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50120063 |
aatatgagcctcgtagtttattgtgtaaaaatagggtagaagcttatacctcatccccaaggcatttctagctgattcagctactgactcccattggtaa |
50120162 |
T |
|
| Q |
113 |
agttcttgtctaggggaaatgacacttgaatgatccctcgagaaaggatagaaagcaccaacttcaatccacctattgcaaagctcttcagtagatatag |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
50120163 |
agttcttgtctaggggaaatgacacttgaatgatccctcgagaaaggatagaaagcaccaacttcaatccacctattacaaagctcttcagtagatatag |
50120262 |
T |
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| Q |
213 |
ggtatcttaaagttggatagaaag |
236 |
Q |
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|||||||||||||||||||||||| |
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| T |
50120263 |
ggtatcttaaagttggatagaaag |
50120286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 13 - 204
Target Start/End: Original strand, 50110073 - 50110264
Alignment:
| Q |
13 |
aatatgagcctcgtagtttagtgtgtaaaaatagggtagaagcttatacctcatccccaaggcatttctagctgattcagctactgactcccattggtaa |
112 |
Q |
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|||||||||||| |||||||| ||||| | ||||||||| |||||||||||||||||||| ||||||||||||||||| ||||| | |||||| |||||| |
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| T |
50110073 |
aatatgagcctcatagtttagggtgtacagatagggtaggagcttatacctcatccccaatgcatttctagctgattcggctaccgtctcccactggtaa |
50110172 |
T |
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| Q |
113 |
agttcttgtctaggggaaatgacacttgaatgatccctcgagaaaggatagaaagcaccaacttcaatccacctattgcaaagctcttcagt |
204 |
Q |
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| T |
50110173 |
agttcttgtctaggagagtagtagtttgcatggtcccttgaaaatggatagaaagcaccaacttcaatccacctattgcaaagctcttcagt |
50110264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 16 - 204
Target Start/End: Complemental strand, 23934726 - 23934538
Alignment:
| Q |
16 |
atgagcctcgtagtttagtgtgtaaaaatagggtagaagcttatacctcatccccaaggcatttctagctgattcagctactgactcccattggtaaagt |
115 |
Q |
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|||||| || ||||||| ||||||| ||| ||||||| ||| ||||| || || || |||||||| ||||||| ||||||||| |||||||||||||| |
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| T |
23934726 |
atgagcttcatagtttaaggtgtaaagatacggtagaatcttgtaccttatacctaaagcatttcttgctgattgagctactgaatcccattggtaaagc |
23934627 |
T |
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| Q |
116 |
tcttgtctaggggaaatgacacttgaatgatccctcgagaaaggatagaaagcaccaacttcaatccacctattgcaaagctcttcagt |
204 |
Q |
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|||||||| ||||| | ||| |||||| || || || || ||||||||||||||||||||||| |||||||| || |||||||| |
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| T |
23934626 |
tcttgtctcggggagtagtagtttgcatgatctcttgaaaatgggtagaaagcaccaacttcaatccatctattgcatagttcttcagt |
23934538 |
T |
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