View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2633_low_1 (Length: 526)
Name: NF2633_low_1
Description: NF2633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2633_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 470; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 19 - 520
Target Start/End: Original strand, 41341302 - 41341803
Alignment:
| Q |
19 |
ttagagataacgaaggtaactgtttaggggtgtttttccgaacccttacgatttctcaattcttatctggcataactatgtggggctatgagagccattg |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41341302 |
ttagagataacgaaggtaactgtttaggggtgttttttcgaacccttacgatttctcaattcttatctggcataactatgtggggctatgagagccattg |
41341401 |
T |
|
| Q |
119 |
aagtggctgctcattatcactggtttaatctttggttagagacaaattctatgttagttttgcaggcttttaaaaattcaaaccttgttccatggcaaat |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41341402 |
aagtggctgctcattatcactggtttaatctttggttagagacaaattctatgttagttttgcaggcttttaaaaattcaaaccttgttccatggcaaat |
41341501 |
T |
|
| Q |
219 |
tagaaatagatgggacaatgttcatattcttctttctataatgcatcgtatagtcactcatatatttagagaaggaaaccaagtggttgattcccttgca |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41341502 |
tagaaatagatgggacaatgttcatattcttctttctataatgcattgtatagtcactcatatatttagagaaggaaaccaagtggttgattcccttgca |
41341601 |
T |
|
| Q |
319 |
aactttggtttctcaatatccatgatttttggactaacaatatacctttgtttgctagagaatattttgttaagaacaagattggtttacctaattataa |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41341602 |
aactttggtttctcaatatccatgatttttggactaacaatatacctttgtttgctagagaatattttgttaagaacaagattggtttacctaattataa |
41341701 |
T |
|
| Q |
419 |
gttttctgcttcttgagggagttttgctttggtcccctccctctattttgtaccttctctcttatgatatannnnnnnnatggctgttagctcctttgct |
518 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
41341702 |
gttttctgcttcttgagggagttttgctttggtcccctccctctattttgtaccttctctcttatgatatattttttttatggctgttagctcctttgct |
41341801 |
T |
|
| Q |
519 |
ac |
520 |
Q |
| |
|
|| |
|
|
| T |
41341802 |
ac |
41341803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 211; Significance: 1e-115; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 19 - 245
Target Start/End: Original strand, 20930527 - 20930753
Alignment:
| Q |
19 |
ttagagataacgaaggtaactgtttaggggtgtttttccgaacccttacgatttctcaattcttatctggcataactatgtggggctatgagagccattg |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20930527 |
ttagagataacgaaggtaactgtttaggggtgtttttccgaacccttgcgatttttcaattcttatctggcataactatgtggggctatgagagccattg |
20930626 |
T |
|
| Q |
119 |
aagtggctgctcattatcactggtttaatctttggttagagacaaattctatgttagttttgcaggcttttaaaaattcaaaccttgttccatggcaaat |
218 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20930627 |
aagtggctgctcataatcactggtttaatctttggttagagacaaattctatgttagttttgcaggcttttaaaaattcaaaccttgttccatggcaaat |
20930726 |
T |
|
| Q |
219 |
tagaaatagatgggacaatgttcatat |
245 |
Q |
| |
|
||||||||||||| ||||||||||||| |
|
|
| T |
20930727 |
tagaaatagatggaacaatgttcatat |
20930753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 266 - 327
Target Start/End: Original strand, 11526948 - 11527009
Alignment:
| Q |
266 |
gtatagtcactcatatatttagagaaggaaaccaagtggttgattcccttgcaaactttggt |
327 |
Q |
| |
|
||||||| |||||||| |||||||||| ||| || || | |||||||||||||||||||||| |
|
|
| T |
11526948 |
gtatagtaactcatatttttagagaagcaaatcatgtaggtgattcccttgcaaactttggt |
11527009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 357 - 481
Target Start/End: Original strand, 11527041 - 11527162
Alignment:
| Q |
357 |
aatatacctttgtttgctagagaatattttgttaagaacaagattggtttacctaattataagttttctgcttcttgagggagttttgctttggtcccct |
456 |
Q |
| |
|
|||||||||||||||||||| ||| | ||||| ||||| |||||||| ||||||| || ||| ||| | || ||||||||||| ||||||||||| |
|
|
| T |
11527041 |
aatatacctttgtttgctaggaaatcctatgttagaaacaaaattggtttgcctaattttaggttctcttcatc---agggagttttggtttggtcccct |
11527137 |
T |
|
| Q |
457 |
ccctctattttgtaccttctctctt |
481 |
Q |
| |
|
|||| ||||||| ||||| |||| |
|
|
| T |
11527138 |
cccttctttttgtatcttctatctt |
11527162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 72; Significance: 2e-32; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 95 - 473
Target Start/End: Original strand, 44882724 - 44883102
Alignment:
| Q |
95 |
tatgtggggctatgagagccattgaagtggctgctcattatcactggtttaatctttggttagagacaaattctatgttagttttgcaggcttttaaaaa |
194 |
Q |
| |
|
|||||||||||||||||||||||||| | ||| | | |||| ||||| ||| | |||||||||| | | || ||| || | ||||| ||| || || |
|
|
| T |
44882724 |
tatgtggggctatgagagccattgaaattgcttcagagaatcattggttgaatttgtggttagagatatactccatgataatcgtgcagattttcaagaa |
44882823 |
T |
|
| Q |
195 |
ttcaaaccttgttccatggcaaattagaaatagatgggacaatgttcatattcttctttctataatgcatcgtatagtcactcatatatttagagaagga |
294 |
Q |
| |
|
|| |||||||| || |||||| ||||||| | |||| |||||||| | | | ||||||| ||| || ||||||| | |||||| |||||||||||| |
|
|
| T |
44882824 |
ctctaaccttgtcccctggcaacttagaaacaaatggaacaatgttaagctaatcctttctagtatgaattgtatagttattcatatttttagagaagga |
44882923 |
T |
|
| Q |
295 |
aaccaagtggttgattcccttgcaaactttggtttctcaatatc-catgatttttggactaacaatatacctttgtttgctagagaatattttgttaaga |
393 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| | || |||| || | | | | |||||||||||||||||||||| |||| |||||| |||| |
|
|
| T |
44882924 |
aaccaagtggtt-attcccttgcaaactttggtctatccttatcttattacgtgttttcgaacaatatacctttgtttgctatggaatcttttgtgaaga |
44883022 |
T |
|
| Q |
394 |
acaagattggtttacctaattataagttttctgcttcttgagggagttttgctttggtcccctccctctattttgtacct |
473 |
Q |
| |
|
||||||||||||||||| ||| ||||| |||||||||||| | ||| ||||||||||||||||| |||||||||| |
|
|
| T |
44883023 |
acaagattggtttaccttccaatagattttcatcttcttgagggaatcttggtttggtcccctccctcttttttgtacct |
44883102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 406 - 471
Target Start/End: Complemental strand, 32489277 - 32489212
Alignment:
| Q |
406 |
tacctaattataagttttctgcttcttgagggagttttgctttggtcccctccctctattttgtac |
471 |
Q |
| |
|
||||||||| || ||||||| |||||||||||||||||| |||||| ||||||||| |||||||| |
|
|
| T |
32489277 |
tacctaattttaggttttcttcttcttgagggagttttggtttggttccctccctcatttttgtac |
32489212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 259 - 326
Target Start/End: Original strand, 12747228 - 12747295
Alignment:
| Q |
259 |
atgcatcgtatagtcactcatatatttagagaaggaaaccaagtggttgattcccttgcaaactttgg |
326 |
Q |
| |
|
|||||| ||||||||||||| || || | |||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
12747228 |
atgcattgtatagtcactcacattttcaaggaaggaaaccaagtagctgattcccttgcaaactttgg |
12747295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 266 - 326
Target Start/End: Original strand, 27051775 - 27051835
Alignment:
| Q |
266 |
gtatagtcactcatatatttagagaaggaaaccaagtggttgattcccttgcaaactttgg |
326 |
Q |
| |
|
||||||| ||||| |||||||||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
27051775 |
gtatagttactcacatatttagagaagggaaccaagttgttgattcccttgcaaactttgg |
27051835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 266 - 329
Target Start/End: Original strand, 42877716 - 42877779
Alignment:
| Q |
266 |
gtatagtcactcatatatttagagaaggaaaccaagtggttgattcccttgcaaactttggttt |
329 |
Q |
| |
|
|||||||||||||||| ||||| |||||||| ||||| | ||||||||| |||| ||||||||| |
|
|
| T |
42877716 |
gtatagtcactcatatttttagggaaggaaatcaagttgctgattccctcgcaagctttggttt |
42877779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 358 - 462
Target Start/End: Original strand, 30222064 - 30222167
Alignment:
| Q |
358 |
atatacctttgtttgctagagaatattttgttaagaacaagattggtttacctaattataagttttctgcttcttgagggag--ttttgctttggtcccc |
455 |
Q |
| |
|
||||||||||||||||||| |||| | ||||| |||||| |||||||||||| | | || ||||| |||| |||||||| ||||| |||||||||| |
|
|
| T |
30222064 |
atatacctttgtttgctagggaatcctatgttaggaacaaaattggtttacctgaatttaggtttt---cttcctgagggagttttttggtttggtcccc |
30222160 |
T |
|
| Q |
456 |
tccctct |
462 |
Q |
| |
|
||||||| |
|
|
| T |
30222161 |
tccctct |
30222167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 147 - 326
Target Start/End: Original strand, 30221852 - 30222031
Alignment:
| Q |
147 |
tctttggttagagacaaattctatgttagttttgcaggcttttaaaaattcaaaccttgttccatggcaaattagaaatagatgggacaatgttcatatt |
246 |
Q |
| |
|
|||||||||||||||| |||||||||| || | || |||||||| ||||| | || || || |||||| | ||||| |||||| |||||||||| || |
|
|
| T |
30221852 |
tctttggttagagacagattctatgttggtggttcaagcttttaagaattccactctagtgccttggcaagtcagaaacagatggaacaatgttcaactt |
30221951 |
T |
|
| Q |
247 |
cttctttctataatgcatcgtatagtcactcatatatttagagaaggaaaccaagtggttgattcccttgcaaactttgg |
326 |
Q |
| |
|
| ||| ||| || ||||||| ||||| || || || |||||||||||||| | ||||||||| ||||||||||| |
|
|
| T |
30221952 |
aaattaactaatatgaattgtatagttactcacattttcagggaaggaaaccaagtagctgattccctcgcaaactttgg |
30222031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 266 - 326
Target Start/End: Original strand, 4083468 - 4083528
Alignment:
| Q |
266 |
gtatagtcactcatatatttagagaaggaaaccaagtggttgattcccttgcaaactttgg |
326 |
Q |
| |
|
||||||| |||||||| ||||| ||||| |||||||| | | ||||||||||||||||||| |
|
|
| T |
4083468 |
gtatagttactcatatctttagggaaggtaaccaagttgcttattcccttgcaaactttgg |
4083528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 147 - 326
Target Start/End: Original strand, 32022250 - 32022429
Alignment:
| Q |
147 |
tctttggttagagacaaattctatgttagttttgcaggcttttaaaaattcaaaccttgttccatggcaaattagaaatagatgggacaatgttcatatt |
246 |
Q |
| |
|
|||||||||||||||| |||||||||| || | || |||||||| ||||| | || || || |||||| | ||||| |||||| |||||||||| || |
|
|
| T |
32022250 |
tctttggttagagacagattctatgttggtggttcaagcttttaagaattccactctagtgccttggcaagtcagaaacagatggaacaatgttcaactt |
32022349 |
T |
|
| Q |
247 |
cttctttctataatgcatcgtatagtcactcatatatttagagaaggaaaccaagtggttgattcccttgcaaactttgg |
326 |
Q |
| |
|
| ||| ||| || ||||||| ||||| || || || |||||||||||||| | ||||||||| ||||||||||| |
|
|
| T |
32022350 |
aaattaactaatatgaattgtatagttactcacattttcagggaaggaaaccaagtagctgattccctcgcaaactttgg |
32022429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 462
Target Start/End: Original strand, 32022462 - 32022565
Alignment:
| Q |
358 |
atatacctttgtttgctagagaatattttgttaagaacaagattggtttacctaattataagttttctgcttcttgagggag--ttttgctttggtcccc |
455 |
Q |
| |
|
||||||||||||||||||| |||| | |||| |||||| |||||||||||| | | || ||||| |||| |||||||| ||||| |||||||||| |
|
|
| T |
32022462 |
atatacctttgtttgctagggaatcctacgttaggaacaaaattggtttacctgaatttaggtttt---cttcctgagggagttttttggtttggtcccc |
32022558 |
T |
|
| Q |
456 |
tccctct |
462 |
Q |
| |
|
||||||| |
|
|
| T |
32022559 |
tccctct |
32022565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 275 - 326
Target Start/End: Original strand, 12488395 - 12488446
Alignment:
| Q |
275 |
ctcatatatttagagaaggaaaccaagtg-gttgattcccttgcaaactttgg |
326 |
Q |
| |
|
||||||| |||||||||||||| || ||| ||||||||||||||||||||||| |
|
|
| T |
12488395 |
ctcatatttttagagaaggaaatca-gtgtgttgattcccttgcaaactttgg |
12488446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 147 - 326
Target Start/End: Complemental strand, 17628037 - 17627858
Alignment:
| Q |
147 |
tctttggttagagacaaattctatgttagttttgcaggcttttaaaaattcaaaccttgttccatggcaaattagaaatagatgggacaatgttcatatt |
246 |
Q |
| |
|
|||||||||||||||| |||||||||| || | || |||||||| ||||| | || || || |||||| | ||||| |||||| |||||||||| || |
|
|
| T |
17628037 |
tctttggttagagacagattctatgttggtggttcaagcttttaagaattccactctagtgccttggcaagtcagaaacagatggaacaatgttcaactt |
17627938 |
T |
|
| Q |
247 |
cttctttctataatgcatcgtatagtcactcatatatttagagaaggaaaccaagtggttgattcccttgcaaactttgg |
326 |
Q |
| |
|
| ||| ||| || ||||||| ||||| || || || |||||||||||||| | ||||||||| ||||||||||| |
|
|
| T |
17627937 |
aaattaactaatatgaattgtatagttactcacattttcagggaaggaaaccaagtagctgattccctcgcaaactttgg |
17627858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 462
Target Start/End: Complemental strand, 17627825 - 17627722
Alignment:
| Q |
358 |
atatacctttgtttgctagagaatattttgttaagaacaagattggtttacctaattataagttttctgcttcttgagggag--ttttgctttggtcccc |
455 |
Q |
| |
|
||||||||||||||| ||| |||| | ||||| |||||| |||||||||||| | | || ||||| |||| |||||||| ||||| |||||||||| |
|
|
| T |
17627825 |
atatacctttgtttgttagggaatcctatgttaggaacaaaattggtttacctgaatttaggtttt---cttcctgagggagttttttggtttggtcccc |
17627729 |
T |
|
| Q |
456 |
tccctct |
462 |
Q |
| |
|
||||||| |
|
|
| T |
17627728 |
tccctct |
17627722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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