View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2633_low_9 (Length: 226)
Name: NF2633_low_9
Description: NF2633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2633_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 7898341 - 7898124
Alignment:
| Q |
1 |
ctctcctccatttcttcttgcaccacatgcccaaccaacaatcaatatggatgaataaattaggtgaattaataagaaagaattgcaaccaccgcatcac |
100 |
Q |
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| T |
7898341 |
ctctcctccatttcttcttgcaccacatgcccaaccaacaatcaatatggatgaataaattaggtgaattaataagaaagaattgcaaccaccgcatcac |
7898242 |
T |
|
| Q |
101 |
ctccaaccaaactctacatgtaacttgggaatgtaagaacaagtgtaatgtcgattcatcctctaggccacaaaacacgcatctctttgagccttctatc |
200 |
Q |
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| T |
7898241 |
ctccaaccaaacactacatgtaacttggcaatgtaagaacaagtgtaatgtcgattcatcctctaggccacaaaacacacatctctttgagccttcaatt |
7898142 |
T |
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| Q |
201 |
gccaaaagctttcttctc |
218 |
Q |
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||||||||| |||||||| |
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| T |
7898141 |
gccaaaagccttcttctc |
7898124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 121
Target Start/End: Original strand, 36857467 - 36857508
Alignment:
| Q |
80 |
gaattgcaaccaccgcatcacctccaaccaaactctacatgt |
121 |
Q |
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|||||| ||||||| |||||||||||||||||||||| |||| |
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| T |
36857467 |
gaattgaaaccacctcatcacctccaaccaaactctagatgt |
36857508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 116
Target Start/End: Original strand, 27895295 - 27895331
Alignment:
| Q |
80 |
gaattgcaaccaccgcatcacctccaaccaaactcta |
116 |
Q |
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| T |
27895295 |
gaattgcagccaccgcatcacatccaaccaaactcta |
27895331 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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