View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2635_high_5 (Length: 283)
Name: NF2635_high_5
Description: NF2635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2635_high_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 18 - 270
Target Start/End: Complemental strand, 11457168 - 11456918
Alignment:
| Q |
18 |
cagaaacaagggtattagtgtctaaaattttcttttttcagtaacgacactgtaactaagtagttgcaacattttatacctcaaaccaacatttttctct |
117 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |
|
|
| T |
11457168 |
cagaaacaagggtat--gtgtctaaaattttcttttttcagtaacgacactgtaactaagtagttgcaacattttatacctcagatcaacatttttctct |
11457071 |
T |
|
| Q |
118 |
cttcattcatcagattgcaaccaaattgttaactaaattttctatattttcaacctggttgaaaataatttccatttcccaatcttatcaatatatcttt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
11457070 |
cttcattcatcagattgcaaccaaattgttaactaaattttctatattttcaacctggttgaaaataatttccatttcccaatcttatcaatatatcatt |
11456971 |
T |
|
| Q |
218 |
catcttgacacttgagtcagtgcacaactccaatcacattagtatataccttc |
270 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11456970 |
catcttgacacttgagtcagtgcacaactccaatcacattagtatataccttc |
11456918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University