View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2635_low_12 (Length: 249)

Name: NF2635_low_12
Description: NF2635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2635_low_12
NF2635_low_12
[»] chr2 (14 HSPs)
chr2 (1-235)||(29941364-29941599)
chr2 (51-233)||(45547349-45547530)
chr2 (51-229)||(7487636-7487820)
chr2 (52-185)||(42626896-42627030)
chr2 (51-173)||(35172098-35172220)
chr2 (51-183)||(21736157-21736290)
chr2 (51-134)||(6289039-6289122)
chr2 (1-51)||(6288924-6288974)
chr2 (1-51)||(7487521-7487571)
chr2 (1-51)||(21736042-21736092)
chr2 (1-51)||(45547574-45547624)
chr2 (187-235)||(6289130-6289178)
chr2 (1-51)||(42626780-42626830)
chr2 (11-51)||(35172007-35172047)
[»] chr3 (29 HSPs)
chr3 (51-235)||(24150319-24150504)
chr3 (51-230)||(26005345-26005525)
chr3 (51-235)||(19551649-19551834)
chr3 (51-233)||(30589256-30589439)
chr3 (51-235)||(26293055-26293240)
chr3 (51-235)||(23753966-23754146)
chr3 (51-206)||(38629298-38629454)
chr3 (51-235)||(23697390-23697570)
chr3 (51-235)||(23715846-23716026)
chr3 (51-235)||(23734302-23734482)
chr3 (51-207)||(36054503-36054661)
chr3 (52-235)||(50899917-50900105)
chr3 (51-207)||(35731309-35731469)
chr3 (1-51)||(19551534-19551584)
chr3 (1-51)||(24150204-24150254)
chr3 (1-51)||(26556518-26556568)
chr3 (1-51)||(30589504-30589554)
chr3 (1-51)||(36054388-36054438)
chr3 (1-51)||(38629188-38629238)
chr3 (1-51)||(50899801-50899851)
chr3 (1-51)||(2125075-2125125)
chr3 (1-51)||(35731534-35731584)
chr3 (1-51)||(26292940-26292990)
chr3 (1-51)||(26005230-26005280)
chr3 (1-42)||(23697604-23697645)
chr3 (1-42)||(23716060-23716101)
chr3 (1-42)||(23734516-23734557)
chr3 (1-42)||(23754180-23754221)
chr3 (51-89)||(26556415-26556453)
[»] chr5 (6 HSPs)
chr5 (51-233)||(40411010-40411193)
chr5 (51-235)||(13950283-13950467)
chr5 (51-241)||(3603945-3604146)
chr5 (1-51)||(3603844-3603894)
chr5 (1-51)||(11633063-11633113)
chr5 (1-51)||(13950169-13950218)
[»] chr8 (25 HSPs)
chr8 (51-235)||(29259761-29259946)
chr8 (55-229)||(4655492-4655667)
chr8 (51-235)||(40264766-40264952)
chr8 (51-235)||(43604854-43605039)
chr8 (51-235)||(10795857-10796042)
chr8 (51-234)||(41386353-41386537)
chr8 (51-235)||(43489298-43489482)
chr8 (51-235)||(9457925-9458109)
chr8 (51-229)||(7148459-7148638)
chr8 (62-235)||(2113209-2113381)
chr8 (51-207)||(42275401-42275558)
chr8 (51-235)||(41965075-41965251)
chr8 (169-235)||(41965406-41965472)
chr8 (1-51)||(9458174-9458224)
chr8 (1-51)||(29259646-29259696)
chr8 (1-51)||(41386237-41386287)
chr8 (1-51)||(43489547-43489597)
chr8 (1-49)||(7148705-7148753)
chr8 (1-51)||(2113456-2113506)
chr8 (1-51)||(4655735-4655785)
chr8 (1-51)||(40264651-40264701)
chr8 (1-51)||(42275623-42275673)
chr8 (1-51)||(10795742-10795792)
chr8 (1-51)||(43604739-43604789)
chr8 (1-51)||(41964959-41965010)
[»] chr4 (15 HSPs)
chr4 (51-235)||(8583494-8583679)
chr4 (51-235)||(42217930-42218115)
chr4 (51-235)||(3435459-3435644)
chr4 (51-233)||(7820465-7820648)
chr4 (51-233)||(42315288-42315472)
chr4 (85-235)||(56397822-56397973)
chr4 (150-235)||(44930293-44930378)
chr4 (1-51)||(3435344-3435394)
chr4 (1-51)||(8583379-8583429)
chr4 (1-51)||(42315537-42315587)
chr4 (1-51)||(56398667-56398717)
chr4 (1-51)||(42217815-42217865)
chr4 (11-51)||(7820713-7820753)
chr4 (51-93)||(56398552-56398594)
chr4 (11-51)||(7808787-7808827)
[»] chr7 (18 HSPs)
chr7 (51-232)||(47913816-47913998)
chr7 (51-235)||(43057161-43057346)
chr7 (51-235)||(152270-152456)
chr7 (51-232)||(47912655-47912837)
chr7 (51-235)||(33474901-33475088)
chr7 (51-228)||(35089590-35089768)
chr7 (56-235)||(12252908-12253088)
chr7 (51-207)||(27418141-27418299)
chr7 (51-207)||(30111233-30111391)
chr7 (1-51)||(12252805-12252855)
chr7 (1-51)||(27418026-27418076)
chr7 (1-51)||(152521-152571)
chr7 (1-51)||(35089475-35089525)
chr7 (1-51)||(43057046-43057096)
chr7 (1-51)||(33475153-33475203)
chr7 (1-51)||(47912902-47912952)
chr7 (1-51)||(47913701-47913751)
chr7 (1-51)||(30111456-30111501)
[»] chr1 (11 HSPs)
chr1 (51-235)||(45318880-45319065)
chr1 (51-235)||(52705804-52705989)
chr1 (52-235)||(26882310-26882494)
chr1 (51-228)||(45535177-45535359)
chr1 (158-235)||(39758354-39758432)
chr1 (158-235)||(39763708-39763786)
chr1 (1-51)||(14389047-14389097)
chr1 (1-51)||(52706054-52706104)
chr1 (1-51)||(26882194-26882244)
chr1 (1-51)||(45319130-45319180)
chr1 (1-51)||(45535424-45535474)
[»] scaffold0153 (2 HSPs)
scaffold0153 (51-235)||(34300-34485)
scaffold0153 (1-51)||(34185-34235)
[»] scaffold0016 (2 HSPs)
scaffold0016 (51-235)||(81268-81453)
scaffold0016 (1-51)||(81153-81203)
[»] chr6 (6 HSPs)
chr6 (51-235)||(3109842-3110026)
chr6 (51-235)||(29865236-29865420)
chr6 (51-207)||(6476217-6476369)
chr6 (1-51)||(3109727-3109777)
chr6 (1-51)||(6476123-6476173)
chr6 (1-51)||(29865121-29865171)
[»] scaffold0237 (2 HSPs)
scaffold0237 (51-235)||(20931-21115)
scaffold0237 (1-51)||(20816-20866)


Alignment Details
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 29941599 - 29941364
Alignment:
Q  1 atatgatatcaaaataaatagacctaaaaataagttatgttagtttattgaataccaatgaacgtaaagttttgatttttataataatttgatatatagg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  29941599 atatgatatcaaaataaatagacctaaaaataagttatgttagtttattgaataccaatgaacgtaaaattttgatttttataataatttgatatatagg 29941500  T
Q  101 tagatggtaaattaaccacaagattatacagtacattc-nnnnnnnaattaacgtaaaagttatgttaagaaaagtgcaagttagatgcatgatgatttc 199  Q
    ||||| ||||||||||||||||||||||||||||||||        ||| |||||||||||||||||||||||||||||||||||| |||||||||||||    
T  29941499 tagattgtaaattaaccacaagattatacagtacattcttttttttaatgaacgtaaaagttatgttaagaaaagtgcaagttagaggcatgatgatttc 29941400  T
Q  200 gacaataagtttgccaaacaaaatatataacctgcc 235  Q
    ||||||||||||||||||||||||||||||| ||||    
T  29941399 gacaataagtttgccaaacaaaatatataacatgcc 29941364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 51 - 233
Target Start/End: Complemental strand, 45547530 - 45547349
Alignment:
Q  51 aataccaatgaacgtaaagttttgatttttataataatttgatatataggtagatggtaaattaaccacaagattatacagtacattcnnnnnnnaatta 150  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||| |    
T  45547530 aataccaatgaacgtaaagttgtgatttttataataatttgatatataggtagatggtaaattaaccacaagattatacagtacatt-tttttttaatga 45547432  T
Q  151 acgtaaaagttatgttaagaaaagtgcaagttagatgcatgatgatttcgacaataagtttgccaaacaaaatatataacctg 233  Q
    |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||    
T  45547431 acgtaaaaattatgttaagaaaagtgcaagttagaggcatgatgatttcgacaataagtttgtcaaacaaaatatataacctg 45547349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 51 - 229
Target Start/End: Original strand, 7487636 - 7487820
Alignment:
Q  51 aataccaatgaacgtaaagttttgatttttataataatttgatatataggtagatggtaaattaaccacaagattatacagtacattc------nnnnnn 144  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||| |||                
T  7487636 aataccaatgaacgtaaagttgtgatttttataataatttgatatataagtagatgataaattaaccataagattatacagtacgttctttttttttttt 7487735  T
Q  145 naattaacgtaaaagttatgttaagaaaagtgcaagttagatgcatgatgatttcgacaataagtttgccaaacaaaatatataa 229  Q
     ||| ||||||||||||||||||||||| |||||||| ||| ||||||| |||||||||||||||||| ||||||||||||||||    
T  7487736 taatgaacgtaaaagttatgttaagaaaggtgcaagtaagaggcatgataatttcgacaataagtttgtcaaacaaaatatataa 7487820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 52 - 185
Target Start/End: Original strand, 42626896 - 42627030
Alignment:
Q  52 ataccaatgaacgtaaagttttgatttttataataatttgatatataggtagatggtaaattaaccacaagattatacagtacattc-nnnnnnnaatta 150  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||        ||| |    
T  42626896 ataccaatgaacgtaaagttgtgatttttataataatttgatatatagatagatggtaaattaaccacaagattatacagtacattcttttttttaatga 42626995  T
Q  151 acgtaaaagttatgttaagaaaagtgcaagttaga 185  Q
    |||||||||||||||||||||||||||||||||||    
T  42626996 acgtaaaagttatgttaagaaaagtgcaagttaga 42627030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 51 - 173
Target Start/End: Original strand, 35172098 - 35172220
Alignment:
Q  51 aataccaatgaacgtaaagttttgatttttataataatttgatatataggtagatggtaaattaaccacaagattatacagtacattcnnnnnnnaatta 150  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||| |||       ||| |    
T  35172098 aataccaatgaacgtaaagttgtgatttttataataatttgatatataggtagatgataaattaatcacaagattatacaatacgttctttttttaatga 35172197  T
Q  151 acgtaaaagttatgttaagaaaa 173  Q
    |||||||||||||||||||||||    
T  35172198 acgtaaaagttatgttaagaaaa 35172220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 51 - 183
Target Start/End: Original strand, 21736157 - 21736290
Alignment:
Q  51 aataccaatgaacgtaaagttttgatttttataataatttgatatataggtagatggtaaattaaccacaagattatacagtacattc-nnnnnnnaatt 149  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||| |||        ||      
T  21736157 aataccaatgaacgtaaagttgtgatttttataataatttgatatataggtagatgataaattaaccacaaaattatacaatacgttcttttttttaacg 21736256  T
Q  150 aacgtaaaagttatgttaagaaaagtgcaagtta 183  Q
    |||||||||||||||||||||||| |||||||||    
T  21736257 aacgtaaaagttatgttaagaaaaatgcaagtta 21736290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 51 - 134
Target Start/End: Original strand, 6289039 - 6289122
Alignment:
Q  51 aataccaatgaacgtaaagttttgatttttataataatttgatatataggtagatggtaaattaaccacaagattatacagtac 134  Q
    |||||||| |||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||    
T  6289039 aataccaaagaacgtaaagttgtgatttttataataatttgacatataggtagatggtaagttaaccacaagattatacagtac 6289122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 6288924 - 6288974
Alignment:
Q  1 atatgatatcaaaataaatagacctaaaaataagttatgttagtttattga 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6288924 atatgatatcaaaataaatagacctaaaaataagttatgttagtttattga 6288974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 7487521 - 7487571
Alignment:
Q  1 atatgatatcaaaataaatagacctaaaaataagttatgttagtttattga 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7487521 atatgatatcaaaataaatagacctaaaaataagttatgttagtttattga 7487571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 21736042 - 21736092
Alignment:
Q  1 atatgatatcaaaataaatagacctaaaaataagttatgttagtttattga 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21736042 atatgatatcaaaataaatagacctaaaaataagttatgttagtttattga 21736092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 45547624 - 45547574
Alignment:
Q  1 atatgatatcaaaataaatagacctaaaaataagttatgttagtttattga 51  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  45547624 atatgatatcaaaataaatagaccaaaaaataagttatgttagtttattga 45547574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 187 - 235
Target Start/End: Original strand, 6289130 - 6289178
Alignment:
Q  187 gcatgatgatttcgacaataagtttgccaaacaaaatatataacctgcc 235  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  6289130 gcatgatgatttcgataataagtttgccaaacaaaatatataacctgcc 6289178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 42626780 - 42626830
Alignment:
Q  1 atatgatatcaaaataaatagacctaaaaataagttatgttagtttattga 51  Q
    ||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  42626780 atatgatatcaaaataaatagaattaaaaataagttatgttagtttattga 42626830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 51
Target Start/End: Original strand, 35172007 - 35172047
Alignment:
Q  11 aaaataaatagacctaaaaataagttatgttagtttattga 51  Q
    |||| ||| ||||||||||||||||||||||||||||||||    
T  35172007 aaaaaaaaaagacctaaaaataagttatgttagtttattga 35172047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 145; Significance: 2e-76; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 51 - 235
Target Start/End: Original strand, 24150319 - 24150504
Alignment:
Q  51 aataccaatgaacgtaaagttttgatttttataataatttgatatataggtagatggtaaattaaccacaagattatacagtacattc-nnnnnnnaatt 149  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||        |||     
T  24150319 aataccaatgaacgtaaagttttgatttttataataatttgatatatagatagatggtaaattaaccacaagattatacagtacattcttttttttaatg 24150418  T
Q  150 aacgtaaaagttatgttaagaaaagtgcaagttagatgcatgatgatttcgacaataagtttgccaaacaaaatatataacctgcc 235  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  24150419 aacgtaaaagttatgttaagaaaagtgcaagttagaggcatgatgatttcgacaataagtttgccaaacaaaatatataacctgcc 24150504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 51 - 230
Target Start/End: Original strand, 26005345 - 26005525
Alignment:
Q  51 aataccaatgaacgtaaagttttgatttttataataatttgatatataggtagatggtaaattaaccacaagattatacagtacattcnnnnnnn-aatt 149  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||        ||||    
T  26005345 aataccaatgaacgtaaagttgtgatttttataataatttgatatataggtagatggtaaattaaccacaagattatacggtacattcttttttttaatt 26005444  T
Q  150 aacgtaaaagttatgttaagaaaagtgcaagttagatgcatgatgatttcgacaataagtttgccaaacaaaatatataac 230  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  26005445 aacgtaaaagttatgttaagaaaagtgcaagttagaggcatgatgatttcgacaataagtttgccaaacaaaatatataac 26005525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 51 - 235
Target Start/End: Original strand, 19551649 - 19551834
Alignment:
Q  51 aataccaatgaacgtaaagttttgatttttataataatttgatatataggtagatggtaaattaaccacaagattatacagtacattc-nnnnnnnaatt 149  Q
    ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||     
T  19551649 aatactaatgaacgtaaagttttaatttttataataatttgatatataggtagatggtaaattaaccacaagattatacagtacattcttttttttaatg 19551748  T
Q  150 aacgtaaaagttatgttaagaaaagtgcaagttagatgcatgatgatttcgacaataagtttgccaaacaaaatatataacctgcc 235  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  19551749 aacgtaaaagttatgttaagaaaagtgcaagttagaggcatgatgatttcgacaataagtttgtcaaacaaaatatataacctgcc 19551834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 51 - 233
Target Start/End: Complemental strand, 30589439 - 30589256
Alignment:
Q  51 aataccaatgaacgtaaagttttgatttttataataatttgatatataggtagatggtaaattaaccacaagattatacagtacattcnnnnnnn-aatt 149  Q
    |||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||        ||||    
T  30589439 aatatcaatgaatgtaaagttgtgatttttataataatttgatatataggtagatggtaaattaaccacaagattatacggtacattcttttttttaatt 30589340  T
Q  150 aacgtaaaagttatgttaagaaaagtgcaagttagatgcatgatgatttcgacaataagtttgccaaacaaaatatataacctg 233  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  30589339 aacgtaaaagttatgttaagaaaagtgcaagttagaggcatgatgatttcgacaataagtttgccaaacaaaatatataacctg 30589256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 51 - 235
Target Start/End: Original strand, 26293055 - 26293240
Alignment:
Q  51 aataccaatgaacgtaaagttttgatttttataataatttgatatataggtagatggtaaattaaccacaagattatacagtacattcnnnnnnn-aatt 149  Q
    ||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||        |||     
T  26293055 aataccaatgaacgtaaagtcgtgatttttataataatttgatatataggtagatggtaaattaaccacaagattatacagtatgttcctttttttaatg 26293154  T
Q  150 aacgtaaaagttatgttaagaaaagtgcaagttagatgcatgatgatttcgacaataagtttgccaaacaaaatatataacctgcc 235  Q
    ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  26293155 aacgtaaaagttatgttaagaaaagtggaagttagaggcatgatgatttcgacaataagtttgccaaacaaaatatataacctgcc 26293240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 51 - 235
Target Start/End: Complemental strand, 23754146 - 23753966
Alignment:
Q  51 aataccaatgaacgtaaagttttgatttttataataatttgatatataggtagatggtaaattaaccacaagattatacagtacattc-nnnnnnnaatt 149  Q
    ||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||        |||     
T  23754146 aataccaatgaacgtaaagttgtgatttttacaataatttgatatataggtagatggtaaattaaccacaagattatacagtacgttcttttttttaatg 23754047  T
Q  150 aacgtaaaagttatgttaagaaaagtgcaagttagatgcatgatgatttcgacaataagtttgccaaacaaaatatataacctgcc 235  Q
    ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||     |||||||||||||||||||||||    
T  23754046 aacgtaaaagttatgttaaaaaaagtgcaagttagaggcatgatgatttcgacaataa-----ccaaacaaaatatataacctgcc 23753966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 51 - 206
Target Start/End: Original strand, 38629298 - 38629454
Alignment:
Q  51 aataccaatgaacgtaaagttttgatttttataataatttgatatataggtagatggtaaattaaccacaagattatacagtacattc-nnnnnnnaatt 149  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||     
T  38629298 aataccaatgaacgtaaagttgtgatttttataataatttgatatataggtagatggtaaattaaccacaagattatacagtacattcttttttttaatg 38629397  T
Q  150 aacgtaaaagttatgttaagaaaagtgcaagttagatgcatgatgatttcgacaata 206  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||    
T  38629398 aacgtaaaaattatgttaagaaaagtgcaagttagaggcatgatgatttcgacaata 38629454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 51 - 235
Target Start/End: Complemental strand, 23697570 - 23697390
Alignment:
Q  51 aataccaatgaacgtaaagttttgatttttataataatttgatatataggtagatggtaaattaaccacaagattatacagtacattc-nnnnnnnaatt 149  Q
    ||||| |||||||||||| || |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |||        |||     
T  23697570 aatactaatgaacgtaaaattgtgatttttataataatttgatatataggtagatgataaattaaccacaatattatacagtacgttcttttttttaatg 23697471  T
Q  150 aacgtaaaagttatgttaagaaaagtgcaagttagatgcatgatgatttcgacaataagtttgccaaacaaaatatataacctgcc 235  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||     |||||||||||||||||||||||    
T  23697470 aacgtaaaagttatgttaagaaaagtgcaagttagaggcatgatgattttgacaataa-----ccaaacaaaatatataacctgcc 23697390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 51 - 235
Target Start/End: Complemental strand, 23716026 - 23715846
Alignment:
Q  51 aataccaatgaacgtaaagttttgatttttataataatttgatatataggtagatggtaaattaaccacaagattatacagtacattc-nnnnnnnaatt 149  Q
    ||||| |||||||||||| || |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |||        |||     
T  23716026 aatactaatgaacgtaaaattgtgatttttataataatttgatatataggtagatgataaattaaccacaatattatacagtacgttcttttttttaatg 23715927  T
Q  150 aacgtaaaagttatgttaagaaaagtgcaagttagatgcatgatgatttcgacaataagtttgccaaacaaaatatataacctgcc 235  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||     |||||||||||||||||||||||    
T  23715926 aacgtaaaagttatgttaagaaaagtgcaagttagaggcatgatgattttgacaataa-----ccaaacaaaatatataacctgcc 23715846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 51 - 235
Target Start/End: Complemental strand, 23734482 - 23734302
Alignment:
Q  51 aataccaatgaacgtaaagttttgatttttataataatttgatatataggtagatggtaaattaaccacaagattatacagtacattc-nnnnnnnaatt 149  Q
    ||||| |||||||||||| || |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |||        |||     
T  23734482 aatactaatgaacgtaaaattgtgatttttataataatttgatatataggtagatgataaattaaccacaatattatacagtacgttcttttttttaatg 23734383  T
Q  150 aacgtaaaagttatgttaagaaaagtgcaagttagatgcatgatgatttcgacaataagtttgccaaacaaaatatataacctgcc 235  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||     |||||||||||||||||||||||    
T  23734382 aacgtaaaagttatgttaagaaaagtgcaagttagaggcatgatgattttgacaataa-----ccaaacaaaatatataacctgcc 23734302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 51 - 207
Target Start/End: Original strand, 36054503 - 36054661
Alignment:
Q  51 aataccaatgaacgtaaagttttgatttttataataatttgatatataggtagatggtaaattaaccacaagattatacagtacattc--nnnnnnnaat 148  Q
    |||||||||||||  |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||         |||    
T  36054503 aataccaatgaacaaaaagttgtgatttttataataatttgatatataggtagatggtaaattaaccacaagattatacagtacgttctttttttttaat 36054602  T
Q  149 taacgtaaaagttatgttaagaaaagtgcaagttagatgcatgatgatttcgacaataa 207  Q
     ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||    
T  36054603 gaacgtaaaaattatgttaagaaaagtgcaagttagaggcatgatgatttcgacaataa 36054661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 52 - 235
Target Start/End: Original strand, 50899917 - 50900105
Alignment:
Q  52 ataccaatgaacgtaaagttttgatttttataataatttgatatataggtagatggtaaattaaccacaagattatacagtaca-------ttcnnnnnn 144  Q
    ||||| || ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||       ||           
T  50899917 atacctattaacgtaaagttgtgatttttataataatttgatatataggtagatgataaattaaccacaagattatacagtacattattatttttttttt 50900016  T
Q  145 naattaacgtaaaagttatgttaagaaaagtgcaagttagatgcatgatgatttcgacaataagtttgccaaacaaaatatataacctgcc 235  Q
     ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||  || |||||||||||||||||||||| ||||    
T  50900017 taatgaacgtaaaagttatgttaagaaaagtgcaagttagaggcatgatgatttcgaca--aaatttgccaaacaaaatatataacatgcc 50900105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 51 - 207
Target Start/End: Complemental strand, 35731469 - 35731309
Alignment:
Q  51 aataccaatgaacgtaaagttttgatttttataataatttgata-tataggtagatggtaaattaaccacaagattatacagtacattc---nnnnnnna 146  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| || ||||          |    
T  35731469 aataccaatgaacgtaaagttttgatttttataataatttgatattataggtagatggtaaattaaccacaaaattatacaataaattctttttttttta 35731370  T
Q  147 attaacgtaaaagttatgttaagaaaagtgcaagttagatgcatgatgatttcgacaataa 207  Q
    || |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||    
T  35731369 atgaacgtaaaagttatgttaagaaaagtgcaagttagaggcatgatgatttcaacaataa 35731309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 19551534 - 19551584
Alignment:
Q  1 atatgatatcaaaataaatagacctaaaaataagttatgttagtttattga 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19551534 atatgatatcaaaataaatagacctaaaaataagttatgttagtttattga 19551584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 24150204 - 24150254
Alignment:
Q  1 atatgatatcaaaataaatagacctaaaaataagttatgttagtttattga 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24150204 atatgatatcaaaataaatagacctaaaaataagttatgttagtttattga 24150254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 26556568 - 26556518
Alignment:
Q  1 atatgatatcaaaataaatagacctaaaaataagttatgttagtttattga 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26556568 atatgatatcaaaataaatagacctaaaaataagttatgttagtttattga 26556518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 30589554 - 30589504
Alignment:
Q  1 atatgatatcaaaataaatagacctaaaaataagttatgttagtttattga 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30589554 atatgatatcaaaataaatagacctaaaaataagttatgttagtttattga 30589504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 36054388 - 36054438
Alignment:
Q  1 atatgatatcaaaataaatagacctaaaaataagttatgttagtttattga 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36054388 atatgatatcaaaataaatagacctaaaaataagttatgttagtttattga 36054438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 38629188 - 38629238
Alignment:
Q  1 atatgatatcaaaataaatagacctaaaaataagttatgttagtttattga 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38629188 atatgatatcaaaataaatagacctaaaaataagttatgttagtttattga 38629238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 50899801 - 50899851
Alignment:
Q  1 atatgatatcaaaataaatagacctaaaaataagttatgttagtttattga 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50899801 atatgatatcaaaataaatagacctaaaaataagttatgttagtttattga 50899851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 2125075 - 2125125
Alignment:
Q  1 atatgatatcaaaataaatagacctaaaaataagttatgttagtttattga 51  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  2125075 atatgatataaaaataaatagacctaaaaataagttatgttagtttattga 2125125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 35731584 - 35731534
Alignment:
Q  1 atatgatatcaaaataaatagacctaaaaataagttatgttagtttattga 51  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  35731584 atataatatcaaaataaatagacctaaaaataagttatgttagtttattga 35731534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 26292940 - 26292990
Alignment:
Q  1 atatgatatcaaaataaatagacctaaaaataagttatgttagtttattga 51  Q
    ||||| |||||||||||||| ||||||||||||||||||||||||||||||    
T  26292940 atatgctatcaaaataaatacacctaaaaataagttatgttagtttattga 26292990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 26005230 - 26005280
Alignment:
Q  1 atatgatatcaaaataaatagacctaaaaataagttatgttagtttattga 51  Q
    |||||||||||||||||||| ||| |||| |||||||||||||||||||||    
T  26005230 atatgatatcaaaataaataaaccaaaaattaagttatgttagtttattga 26005280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 23697645 - 23697604
Alignment:
Q  1 atatgatatcaaaataaatagacctaaaaataagttatgtta 42  Q
    ||||||||||||||||||||||||||||||||| ||||||||    
T  23697645 atatgatatcaaaataaatagacctaaaaataaattatgtta 23697604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 23716101 - 23716060
Alignment:
Q  1 atatgatatcaaaataaatagacctaaaaataagttatgtta 42  Q
    ||||||||||||||||||||||||||||||||| ||||||||    
T  23716101 atatgatatcaaaataaatagacctaaaaataaattatgtta 23716060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 23734557 - 23734516
Alignment:
Q  1 atatgatatcaaaataaatagacctaaaaataagttatgtta 42  Q
    ||||||||||||||||||||||||||||||||| ||||||||    
T  23734557 atatgatatcaaaataaatagacctaaaaataaattatgtta 23734516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 23754221 - 23754180
Alignment:
Q  1 atatgatatcaaaataaatagacctaaaaataagttatgtta 42  Q
    ||||||||||||||||||||||||||||||||| ||||||||    
T  23754221 atatgatatcaaaataaatagacctaaaaataaattatgtta 23754180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 89
Target Start/End: Complemental strand, 26556453 - 26556415
Alignment:
Q  51 aataccaatgaacgtaaagttttgatttttataataatt 89  Q
    |||| |||||||||||||||| |||||||||||||||||    
T  26556453 aatatcaatgaacgtaaagttgtgatttttataataatt 26556415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 143; Significance: 3e-75; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 51 - 233
Target Start/End: Complemental strand, 40411193 - 40411010
Alignment:
Q  51 aataccaatgaacgtaaagttttgatttttataataatttgatatataggtagatggtaaattaaccacaagattatacagtacattc-nnnnnnnaatt 149  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||     
T  40411193 aataccaatgaacgtaaagttgtgatttttataataatttgatatataggtagatggtaaattaaccacaagattatacagtacattcttttttttaatg 40411094  T
Q  150 aacgtaaaagttatgttaagaaaagtgcaagttagatgcatgatgatttcgacaataagtttgccaaacaaaatatataacctg 233  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  40411093 aacgtaaaagttatgttaagaaaagtgcaagttagaggcatgatgatttcgacaataagtttgccaaacaaaatatataacctg 40411010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 51 - 235
Target Start/End: Original strand, 13950283 - 13950467
Alignment:
Q  51 aataccaatgaacgtaaagttttgatttttataataatttgatatataggtagatggtaaattaaccacaagattatacagtacattcnnnnnnnaatta 150  Q
    ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||        ||| |    
T  13950283 aataccaataaacgtaaagttgtgatttttataataatttgatatataggtagatggtaaattaaccacaagattatacaatacattttttttttaatga 13950382  T
Q  151 acgtaaaagttatgttaagaaaagtgcaagttagatgcatgatgatttcgacaataagtttgccaaacaaaatatataacctgcc 235  Q
    ||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |||||    
T  13950383 acgtaaaagttatgttaagaaaaatgcaagttagaggcatgatgatttcaacaataagtttgccaaacaaaatatataatctgcc 13950467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 51 - 241
Target Start/End: Original strand, 3603945 - 3604146
Alignment:
Q  51 aataccaatgaacgtaaagttttgatttttataataatttgatatataggtagatggtaaattaaccacaagattatacagtacattcnnnnnnnaatt- 149  Q
    |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||        | |     
T  3603945 aatatcaatgaacgtaaaattttgatttttataataatttgatatataggtagatggtaaattaaccataagattatacaatacgttcttttttttaatg 3604044  T
Q  150 ----------aacgtaaaagttatgttaagaaaagtgcaagttagatgcatgatgatttcgacaataagtttgccaaacaaaatatataacctgcctttg 239  Q
              |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||||||||||||||||||| |||    
T  3604045 aacttttatgaacgtaaaagttatgttaagaaaagtgcaagttagaggcatgatgatttcgagaataagtttgtcaaacaaaatatataacctgccattg 3604144  T
Q  240 ct 241  Q
    ||    
T  3604145 ct 3604146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 3603844 - 3603894
Alignment:
Q  1 atatgatatcaaaataaatagacctaaaaataagttatgttagtttattga 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3603844 atatgatatcaaaataaatagacctaaaaataagttatgttagtttattga 3603894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 11633063 - 11633113
Alignment:
Q  1 atatgatatcaaaataaatagacctaaaaataagttatgttagtttattga 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11633063 atatgatatcaaaataaatagacctaaaaataagttatgttagtttattga 11633113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 13950169 - 13950218
Alignment:
Q  1 atatgatatcaaaataaatagacctaaaaataagttatgttagtttattga 51  Q
    ||||||||||||||||||||||||| ||||||||||| |||||||||||||    
T  13950169 atatgatatcaaaataaatagacct-aaaataagttacgttagtttattga 13950218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 141; Significance: 5e-74; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 51 - 235
Target Start/End: Original strand, 29259761 - 29259946
Alignment:
Q  51 aataccaatgaacgtaaagttttgatttttataataatttgatatataggtagatggtaaattaaccacaagattatacagtacattcnnnnnnn-aatt 149  Q
    ||||||||| ||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||    
T  29259761 aataccaataaacgtaaagttgtgatttttatgataatttgatatataggtagatggtaaattaaccacaagattatacagtacattcttttttttaatt 29259860  T
Q  150 aacgtaaaagttatgttaagaaaagtgcaagttagatgcatgatgatttcgacaataagtttgccaaacaaaatatataacctgcc 235  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  29259861 aacgtaaaagttatgttaagaaaagtgcaagttagaggcatgatgatttcgacaataagtttgccaaacaaaatatataacctgcc 29259946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 55 - 229
Target Start/End: Complemental strand, 4655667 - 4655492
Alignment:
Q  55 ccaatgaacgtaaagttttgatttttataataatttgatatataggtagatggtaaattaaccacaagattatacagtacattc-nnnnnnnaattaacg 153  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||| ||||    
T  4655667 ccaatgaacgtaaagttttgatttttataataatttgatatataggtagatggtaaattaaccacaagattatacagtacattcttttttttaatgaacg 4655568  T
Q  154 taaaagttatgttaagaaaagtgcaagttagatgcatgatgatttcgacaataagtttgccaaacaaaatatataa 229  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  4655567 taaaagttatgttaagaaaagtgcaagttagaggcatgatgatttcgacaataagtttgccaaacaaaatatataa 4655492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 51 - 235
Target Start/End: Original strand, 40264766 - 40264952
Alignment:
Q  51 aataccaatgaacgtaaagttttgatttttataataatttgatatataggtagatggtaaattaaccacaagattatacagtacattc--nnnnnnnaat 148  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||    
T  40264766 aataccaatgaacgtaaagttgtgatttttataataatttgatatataggtagatggtaaattaaccacaagattatacagtacattctttttttttaat 40264865  T
Q  149 taacgtaaaagttatgttaagaaaagtgcaagttagatgcatgatgatttcgacaataagtttgccaaacaaaatatataacctgcc 235  Q
     ||||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||    
T  40264866 gaacgtaaaagtcatgttaagaaaagtgcaagttagaggaatgatgatttcgacaataagtttgccaaacaaaatatataacctgcc 40264952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 51 - 235
Target Start/End: Original strand, 43604854 - 43605039
Alignment:
Q  51 aataccaatgaacgtaaagttttgatttttataataatttgatatataggtagatggtaaattaaccacaagattatacagtacattcnnnnnnn-aatt 149  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||        |||     
T  43604854 aataccaatgaacgtaaagttgtgatttttataataatttgatatataggtagatggtaaattaaccacaagattatacaatatattcttttttttaatg 43604953  T
Q  150 aacgtaaaagttatgttaagaaaagtgcaagttagatgcatgatgatttcgacaataagtttgccaaacaaaatatataacctgcc 235  Q
    || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43604954 aatgtacaagttatgttaagaaaagtgcaagttagatgcatgatgatttcgacaataagtttgccaaacaaaatatataacctgcc 43605039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 51 - 235
Target Start/End: Original strand, 10795857 - 10796042
Alignment:
Q  51 aataccaatgaacgtaaagttttgatttttataataatttgatatataggtagatggtaaattaaccacaagattatacagtacattc-nnnnnnnaatt 149  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||        |||     
T  10795857 aataccaatgaacgtaaagttgtgatttttataataatttgatatataggtagatgataaattaaccacaagattatacagtacgttcttttttttaatg 10795956  T
Q  150 aacgtaaaagttatgttaagaaaagtgcaagttagatgcatgatgatttcgacaataagtttgccaaacaaaatatataacctgcc 235  Q
    || ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  10795957 aaagtaaaagttatgttaagaaaagtgcaagttagaggcatgataatttcgacaataagtttgccaaacaaaatatataacctgcc 10796042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 51 - 234
Target Start/End: Original strand, 41386353 - 41386537
Alignment:
Q  51 aataccaatgaacgtaaagttttgatttttataataatttgatatataggtagatggtaaattaaccacaagattatacagtacattc-nnnnnnnaatt 149  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||        |||     
T  41386353 aataccaatgaacgtaaagttgtgatttttataataatttgatatataggtagatggtaaattaaccacaagattattcagtacattcttttttttaatg 41386452  T
Q  150 aacgtaaaagttatgttaagaaaagtgcaagttagatgcatgatgatttcgacaataagtttgccaaacaaaatatataacctgc 234  Q
    |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||| |||||||||||||    
T  41386453 aacgtaaaagttatgttaagaaaaatgcaagttagaggcatgatgatttcgacaataagtttgtcaaacaacatatataacctgc 41386537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 51 - 235
Target Start/End: Complemental strand, 43489482 - 43489298
Alignment:
Q  51 aataccaatgaacgtaaagttttgatttttataataatttgatatataggtagatggtaaattaaccacaagattatacagtacattc-nnnnnnnaatt 149  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||     
T  43489482 aataccaaagaacgtaaagttttgatttttataataatttgatatataggtagatggtaaattaaccacaagattatacagtacattcttttttttaatg 43489383  T
Q  150 aacgtaaaagttatgttaagaaaagtgcaagttagatgcatgatgatttcgacaataagtttgccaaacaaaatatataacctgcc 235  Q
    |||||||||| ||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||| |||||    
T  43489382 aacgtaaaag-tatgttaagaaaagtgcaagttagaggtatgatgatttcgagaataagtttgccaaacaaaatatataatctgcc 43489298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 51 - 235
Target Start/End: Complemental strand, 9458109 - 9457925
Alignment:
Q  51 aataccaatgaacgtaaagttttgatttttataataatttgatatataggtagatggtaaattaaccacaagattatacagtacattcnnnnnnnaatt- 149  Q
    ||||||||||||||||||||| |||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||        |||     
T  9458109 aataccaatgaacgtaaagttgtgatttttataataatttgaaaaaaaggtagatggtaaattaaccacaagattatacagtacattcttttttttattg 9458010  T
Q  150 aacgtaaaagttatgttaagaaaagtgcaagttagatgcatgatgatttcgacaataagtttgccaaacaaaatatataacctgcc 235  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||    
T  9458009 aacgtaaaagttatgttaagaaaagtgcaagttagaggcatgatgatttcgacaa-aagtttgccaaacaaaatatatatcctgcc 9457925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 51 - 229
Target Start/End: Complemental strand, 7148638 - 7148459
Alignment:
Q  51 aataccaatgaacgtaaagttttgatttttataataatttgatatataggtagatggtaaattaaccacaagattatacagtacattc-nnnnnnnaatt 149  Q
    ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||        |||     
T  7148638 aataccaattaacgtaaagttgtgatttttataataatttgatatataggtagatggtaaattaaccacaagattatccagtacattcttttttttaatg 7148539  T
Q  150 aacgtaaaagttatgttaagaaaagtgcaagttagatgcatgatgatttcgacaataagtttgccaaacaaaatatataa 229  Q
    ||||||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||||||||||    
T  7148538 aacgtaaaaattatgttaagaaaagtgcaaggtagaggcatgatgatttcgacaataagtttgtcaaacaaaatatataa 7148459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 62 - 235
Target Start/End: Complemental strand, 2113381 - 2113209
Alignment:
Q  62 acgtaaagttttgatttttataataatttgatatataggtagatggtaaattaaccacaagattatacagtacattcnnnnnnn-aattaacgtaaaagt 160  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||        ||| |||||||||||    
T  2113381 acgtaaagttgtgatttttataataatttgatatataggtagatggtaaat-aaccacaggattatacagtacgttcttttttttaatgaacgtaaaagt 2113283  T
Q  161 tatgttaagaaaagtgcaagttagatgcatgatgatttcgacaataagtttgccaaacaaaatatataacctgcc 235  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||    
T  2113282 tatgttaagaaaagtgcaagttagatgcatggtgatttcgacaat-agtttgccaaacaaaatatataacctgcc 2113209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 51 - 207
Target Start/End: Complemental strand, 42275558 - 42275401
Alignment:
Q  51 aataccaatgaacgtaaagttttgatttttataataatttgatatataggtagatggtaaattaaccacaagattatacagtac---attcnnnnnnnaa 147  Q
    |||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||   |||        ||    
T  42275558 aatatcaatgaacgtaaagttgtgatttttata-taatttgatatataggtagatggtaaattaaccacaagattatacagtacgttattttttttttaa 42275460  T
Q  148 ttaacgtaaaagttatgttaagaaaagtgcaagttagatgcatgatgatttcgacaataa 207  Q
     ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  42275459 -taacgtaaaagttatgttaagaaaagtgcaagttagaggcatgatgatttcgacaataa 42275401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 51 - 235
Target Start/End: Original strand, 41965075 - 41965251
Alignment:
Q  51 aataccaatgaacgtaaagttttgatttttataataatttgatatataggtagatggtaaattaaccacaagattatacagtacattc-nnnnnnnaatt 149  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||        |||     
T  41965075 aataccaatgaacgtaaagttgtgatttttataataatttgatatataggtaaatggtaaattaaccacaaaattattcagtacattcttttttttaatg 41965174  T
Q  150 aacgtaaaagttatgttaagaaaagtgcaagttagatgcatgatgatttcgacaataagtttgccaaacaaaatatataacctgcc 235  Q
    ||||||||||||||||||||||||||| |||||||| | ||         ||||||||||||| ||||||||||||||||||||||    
T  41965175 aacgtaaaagttatgttaagaaaagtgtaagttagaggtat---------gacaataagtttgtcaaacaaaatatataacctgcc 41965251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 169 - 235
Target Start/End: Original strand, 41965406 - 41965472
Alignment:
Q  169 gaaaagtgcaagttagatgcatgatgatttcgacaataagtttgccaaacaaaatatataacctgcc 235  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  41965406 gaaaagtgcaagttagaggcatgatgatttcgacaataagtttgccaaacaaaatatataacctgcc 41965472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 9458224 - 9458174
Alignment:
Q  1 atatgatatcaaaataaatagacctaaaaataagttatgttagtttattga 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9458224 atatgatatcaaaataaatagacctaaaaataagttatgttagtttattga 9458174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 29259646 - 29259696
Alignment:
Q  1 atatgatatcaaaataaatagacctaaaaataagttatgttagtttattga 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29259646 atatgatatcaaaataaatagacctaaaaataagttatgttagtttattga 29259696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 41386237 - 41386287
Alignment:
Q  1 atatgatatcaaaataaatagacctaaaaataagttatgttagtttattga 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41386237 atatgatatcaaaataaatagacctaaaaataagttatgttagtttattga 41386287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 43489597 - 43489547
Alignment:
Q  1 atatgatatcaaaataaatagacctaaaaataagttatgttagtttattga 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43489597 atatgatatcaaaataaatagacctaaaaataagttatgttagtttattga 43489547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 7148753 - 7148705
Alignment:
Q  1 atatgatatcaaaataaatagacctaaaaataagttatgttagtttatt 49  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  7148753 atatgatatcaaaataaatagacctaaaaataagttatgttagtttatt 7148705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 2113506 - 2113456
Alignment:
Q  1 atatgatatcaaaataaatagacctaaaaataagttatgttagtttattga 51  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  2113506 atatgatatcaaaataaatagacctaaaaataagttattttagtttattga 2113456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 4655785 - 4655735
Alignment:
Q  1 atatgatatcaaaataaatagacctaaaaataagttatgttagtttattga 51  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  4655785 atatgatatcaaaacaaatagacctaaaaataagttatgttagtttattga 4655735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 40264651 - 40264701
Alignment:
Q  1 atatgatatcaaaataaatagacctaaaaataagttatgttagtttattga 51  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  40264651 atatgatatcaaaataaatagatctaaaaataagttatgttagtttattga 40264701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 42275673 - 42275623
Alignment:
Q  1 atatgatatcaaaataaatagacctaaaaataagttatgttagtttattga 51  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  42275673 atataatatcaaaataaatagacctaaaaataagttatgttagtttattga 42275623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 10795742 - 10795792
Alignment:
Q  1 atatgatatcaaaataaatagacctaaaaataagttatgttagtttattga 51  Q
    ||||||||||||||||||||||||||||||||||||| |||| ||||||||    
T  10795742 atatgatatcaaaataaatagacctaaaaataagttaagttaatttattga 10795792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 43604739 - 43604789
Alignment:
Q  1 atatgatatcaaaataaatagacctaaaaataagttatgttagtttattga 51  Q
    |||| ||||||||||||||||| ||||||||||||||||||||||||||||    
T  43604739 atataatatcaaaataaatagatctaaaaataagttatgttagtttattga 43604789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 41964959 - 41965010
Alignment:
Q  1 atatgatatcaaaa-taaatagacctaaaaataagttatgttagtttattga 51  Q
    |||||||||||||| ||||||||||||||||||||||||||| |||||||||    
T  41964959 atatgatatcaaaaataaatagacctaaaaataagttatgttggtttattga 41965010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 141; Significance: 5e-74; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 51 - 235
Target Start/End: Original strand, 8583494 - 8583679
Alignment:
Q  51 aataccaatgaacgtaaagttttgatttttataataatttgatatataggtagatggtaaattaaccacaagattatacagtacattc-nnnnnnnaatt 149  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||     
T  8583494 aataccaatgaacgtaaagttgtgatttttataataatttgatatataggtagatggtaaattaaccacaagattatacagtacattcttttttttaatg 8583593  T
Q  150 aacgtaaaagttatgttaagaaaagtgcaagttagatgcatgatgatttcgacaataagtttgccaaacaaaatatataacctgcc 235  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  8583594 aacgtaaaagttatgttaagaaaagtgcaagttagaggcatgatgatttcgacaataagtttgccaaacaaaatatatgacctgcc 8583679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 51 - 235
Target Start/End: Original strand, 42217930 - 42218115
Alignment:
Q  51 aataccaatgaacgtaaagttttgatttttataataatttgatatataggtagatggtaaattaaccacaagattatacagtacattc-nnnnnnnaatt 149  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||     
T  42217930 aataccaatgaacgtaaagttgtgatttttataataatttgatatataggtagatggtaaattaaccacaagattatacagtacattctttttttaaatg 42218029  T
Q  150 aacgtaaaagttatgttaagaaaagtgcaagttagatgcatgatgatttcgacaataagtttgccaaacaaaatatataacctgcc 235  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  42218030 aacgtaaaagttatgttaagaaaagtgcaagttagaggcatgatgatttcgacaataagtttgccaaacaaaatatataatctgcc 42218115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 51 - 235
Target Start/End: Original strand, 3435459 - 3435644
Alignment:
Q  51 aataccaatgaacgtaaagttttgatttttataataatttgatatataggtagatggtaaattaaccacaagattatacagtacattc-nnnnnnnaatt 149  Q
    |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||     
T  3435459 aatagcaatgaacgtaaagttgtgatttttataataatttgatatataggtagatggtaaattaaccacaagattatacagtacattcttttttttaatg 3435558  T
Q  150 aacgtaaaagttatgttaagaaaagtgcaagttagatgcatgatgatttcgacaataagtttgccaaacaaaatatataacctgcc 235  Q
    ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  3435559 aacgtaaaagttatgttaagaaaagtgtaagttagaggcatgatgatttcgacaataagtttgccaaacaaaatatataacctgcc 3435644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 51 - 233
Target Start/End: Complemental strand, 7820648 - 7820465
Alignment:
Q  51 aataccaatgaacgtaaagttttgatttttataataatttgatatataggtagatggtaaattaaccacaagattatacagtacattcnnnnnnn-aatt 149  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||        |||     
T  7820648 aataccaatgaacttaaagttgtgatttttataataatttgatatataggtagatggtaaattaaccacaagattatacagtactttcttttttttaatg 7820549  T
Q  150 aacgtaaaagttatgttaagaaaagtgcaagttagatgcatgatgatttcgacaataagtttgccaaacaaaatatataacctg 233  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  7820548 aacgtaaaagttatgttaagaaaagtgcaagttagaggcatgatgatttcgacaataagtttgccaaacaaaatatataacctg 7820465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 51 - 233
Target Start/End: Complemental strand, 42315472 - 42315288
Alignment:
Q  51 aataccaatgaacgtaaagttttgatttttataataatttgatatataggtagatggtaaattaaccacaagattatacagtacattcnnnnnnn--aat 148  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||         | |    
T  42315472 aataccaatgaacgtaaagttgtgatttttataataatttgatatataggtagatggtaaattaaccacaagattatacaatacgttctttttttttatt 42315373  T
Q  149 taacgtaaaagttatgttaagaaaagtgcaagttagatgcatgatgatttcgacaataagtttgccaaacaaaatatataacctg 233  Q
     |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||    
T  42315372 gaacgtaaaagttatgttaagaaaagtgcaagttagaggcatgatgatttcgacaataagtttgcaaaacaaaatatataacctg 42315288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 85 - 235
Target Start/End: Complemental strand, 56397973 - 56397822
Alignment:
Q  85 taatttgatatataggtagatggtaaattaaccacaagattatacagtacattcnnnnnnn-aattaacgtaaaagttatgttaagaaaagtgcaagtta 183  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||| |||        ||| ||||||||| |||| ||||||||||||||| |||    
T  56397973 taatttgatatataggtagatggtaaattaaccacaacattatacagtacgttcttttttttaatgaacgtaaaaattatattaagaaaagtgcaaatta 56397874  T
Q  184 gatgcatgatgatttcgacaataagtttgccaaacaaaatatataacctgcc 235  Q
    || |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  56397873 gaggcatgatgatttcgacaataagtttgtcaaacaaaatatataacctgcc 56397822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 150 - 235
Target Start/End: Complemental strand, 44930378 - 44930293
Alignment:
Q  150 aacgtaaaagttatgttaagaaaagtgcaagttagatgcatgatgatttcgacaataagtttgccaaacaaaatatataacctgcc 235  Q
    |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  44930378 aacgtaaaagttatattaagaaaagtgcaagttagaggcatgatgatttcgacaataagtttgtcaaacaaaatatataacctgcc 44930293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 3435344 - 3435394
Alignment:
Q  1 atatgatatcaaaataaatagacctaaaaataagttatgttagtttattga 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3435344 atatgatatcaaaataaatagacctaaaaataagttatgttagtttattga 3435394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 8583379 - 8583429
Alignment:
Q  1 atatgatatcaaaataaatagacctaaaaataagttatgttagtttattga 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8583379 atatgatatcaaaataaatagacctaaaaataagttatgttagtttattga 8583429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 42315587 - 42315537
Alignment:
Q  1 atatgatatcaaaataaatagacctaaaaataagttatgttagtttattga 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42315587 atatgatatcaaaataaatagacctaaaaataagttatgttagtttattga 42315537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 56398717 - 56398667
Alignment:
Q  1 atatgatatcaaaataaatagacctaaaaataagttatgttagtttattga 51  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  56398717 atatgatatcaaaataaatagacctaaaaataagttacgttagtttattga 56398667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 42217815 - 42217865
Alignment:
Q  1 atatgatatcaaaataaatagacctaaaaataagttatgttagtttattga 51  Q
    ||||||||||||||| ||||||| |||||||||||||||||||||||||||    
T  42217815 atatgatatcaaaatgaatagacttaaaaataagttatgttagtttattga 42217865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 51
Target Start/End: Complemental strand, 7820753 - 7820713
Alignment:
Q  11 aaaataaatagacctaaaaataagttatgttagtttattga 51  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  7820753 aaaataaatagacctaaaaataagttatgttagtttattga 7820713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 51 - 93
Target Start/End: Complemental strand, 56398594 - 56398552
Alignment:
Q  51 aataccaatgaacgtaaagttttgatttttataataatttgat 93  Q
    |||| |||||||||||||||| |||||||||||||||||||||    
T  56398594 aatatcaatgaacgtaaagttgtgatttttataataatttgat 56398552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 51
Target Start/End: Complemental strand, 7808827 - 7808787
Alignment:
Q  11 aaaataaatagacctaaaaataagttatgttagtttattga 51  Q
    ||||||||||||||||||||||||| | |||| ||||||||    
T  7808827 aaaataaatagacctaaaaataagtgacgttactttattga 7808787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 138; Significance: 3e-72; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 51 - 232
Target Start/End: Original strand, 47913816 - 47913998
Alignment:
Q  51 aataccaatgaacgtaaagttttgatttttataataatttgatatataggtagatggtaaattaaccacaagattatacagtacattc-nnnnnnnaatt 149  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||        |||     
T  47913816 aataccaatgaacgtaaagttgtgatttttataataatttgatatataggtagatggtaaattaaccacaagattatacagtacgttcttttttttaatg 47913915  T
Q  150 aacgtaaaagttatgttaagaaaagtgcaagttagatgcatgatgatttcgacaataagtttgccaaacaaaatatataacct 232  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  47913916 aacgtaaaagttatgttaagaaaagtgcaagttagaggcatgatgatttcgacaataagtttgccaaacaaaatatataacct 47913998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 51 - 235
Target Start/End: Original strand, 43057161 - 43057346
Alignment:
Q  51 aataccaatgaacgtaaagttttgatttttataataatttgatatataggtagatggtaaattaaccacaagattatacagtacattc-nnnnnnnaatt 149  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||        |||     
T  43057161 aataccaatgaacgtaaagttgtgatttttataataatttgatatatagatagatggtaaattaaccacaagattatacagtacattcttttttttaatg 43057260  T
Q  150 aacgtaaaagttatgttaagaaaagtgcaagttagatgcatgatgatttcgacaataagtttgccaaacaaaatatataacctgcc 235  Q
    ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  43057261 aacgtaaaaattatgttaagaaaagtgcaagttagaggcatgatgatttcgacaataagtttgccaaacaaaatatataacctgcc 43057346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 51 - 235
Target Start/End: Complemental strand, 152456 - 152270
Alignment:
Q  51 aataccaatgaacgtaaagttttgatttttataataatttgatatataggtagatggtaaattaaccacaagattatacagtacattc--nnnnnnnaat 148  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||    
T  152456 aataccaatgaacgtaaagttgtgatttttataataatttgatatataggtagatggtaaattaaccacaagattatacagtacattctttttttttaat 152357  T
Q  149 taacgtaaaagttatgttaagaaaagtgcaagttagatgcatgatgatttcgacaataagtttgccaaacaaaatatataacctgcc 235  Q
     ||||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||    
T  152356 gaacgtaaaagtcatgttaagaaaagtgcaagttagaggaatgatgatttcgacaataagtttgccaaacaaaatatataacctgcc 152270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 51 - 232
Target Start/End: Complemental strand, 47912837 - 47912655
Alignment:
Q  51 aataccaatgaacgtaaagttttgatttttataataatttgatatataggtagatggtaaattaaccacaagattatacagtacattcnnnnnnn-aatt 149  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||        |||     
T  47912837 aataccaatgaacgtaaagttgtgatttttataataatttgatatataggtagatggtaaattaaccacaagattatatagtacgttcttttttttaatg 47912738  T
Q  150 aacgtaaaagttatgttaagaaaagtgcaagttagatgcatgatgatttcgacaataagtttgccaaacaaaatatataacct 232  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  47912737 aacgtaaaagttatgttaagaaaagtgcaagttagaggcatgatgatttcgacaataagtttgccaaacaaaatatataacct 47912655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 51 - 235
Target Start/End: Complemental strand, 33475088 - 33474901
Alignment:
Q  51 aataccaatgaacgtaaagttttgatttttataataatttgatatataggtagatggtaaattaaccacaagattatacagtacattcnnnnnnn---aa 147  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||          ||    
T  33475088 aataccaatgaacataaagttgtgatttttataataatttgatatataggtagatggtaaattaaccacaagattatacagttcgttcttttttttttaa 33474989  T
Q  148 ttaacgtaaaagttatgttaagaaaagtgcaagttagatgcatgatgatttcgacaataagtttgccaaacaaaatatataacctgcc 235  Q
    | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  33474988 tgaacgtaaaagttatgttaagaaaagtgcaagttagaggcatgatgatttcgacaataagtttgccaaacaaaatatataacatgcc 33474901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 51 - 228
Target Start/End: Original strand, 35089590 - 35089768
Alignment:
Q  51 aataccaatgaacgtaaagttttgatttttataataatttgatatataggtagatggtaaattaaccacaagattatacagtacattc-nnnnnnnaatt 149  Q
    |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||        |||     
T  35089590 aataccgatgaacgtaaagttgtgatttttataataatttgatatataggtagatggtaaattaaccacaagattatacaatacattcttttttttaatg 35089689  T
Q  150 aacgtaaaagttatgttaagaaaagtgcaagttagatgcatgatgatttcgacaataagtttgccaaacaaaatatata 228  Q
    |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||| |||||    
T  35089690 aacgtaaaagttatgttaagaaaaatgcaagttagaggcatgatgatttcgacaataagtttgtcaaacaaaaaatata 35089768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 56 - 235
Target Start/End: Original strand, 12252908 - 12253088
Alignment:
Q  56 caatgaacgtaaagttttgatttttataataatttgatatataggtagatggtaaattaaccacaagattatacagtacattc-nnnnnnnaattaacgt 154  Q
    ||||||||||||| || |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||        ||| ||| |    
T  12252908 caatgaacgtaaaattgtgatttttataataatttgatatataggtatatggtaaattaaccacaagattatacagtacgttcttttttttaatgaacat 12253007  T
Q  155 aaaagttatgttaagaaaagtgcaagttagatgcatgatgatttcgacaataagtttgccaaacaaaatatataacctgcc 235  Q
    |||||||||||||||||||||| |||||||| |||||||||||| ||||||||||||||| ||||||||||||||| ||||    
T  12253008 aaaagttatgttaagaaaagtgtaagttagaggcatgatgattttgacaataagtttgccgaacaaaatatataacttgcc 12253088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 51 - 207
Target Start/End: Original strand, 27418141 - 27418299
Alignment:
Q  51 aataccaatgaacgtaaagttttgatttttataataatttgatatataggtagatggtaaattaaccacaagattatacagtacattc--nnnnnnnaat 148  Q
    |||||||||||||  |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||         |||    
T  27418141 aataccaatgaacaaaaagttgtgatttttataataatttgatatataggtagatggtaaattaaccacaagattatacagtacgttctttttttttaat 27418240  T
Q  149 taacgtaaaagttatgttaagaaaagtgcaagttagatgcatgatgatttcgacaataa 207  Q
     |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  27418241 gaacgtaaaagttatgttaagaaaagtgcaagttagaggcatgatgatttcgacaataa 27418299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 51 - 207
Target Start/End: Complemental strand, 30111391 - 30111233
Alignment:
Q  51 aataccaatgaacgtaaagttttgatttttataataatttgatatataggtagatggtaaattaaccacaagattatacagtacattc--nnnnnnnaat 148  Q
    |||||||||||||  |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||         |||    
T  30111391 aataccaatgaacaaaaagttgtgatttttataataatttgatatataggtagatggtaaattaaccacaagattatacagtacgttctttttttttaat 30111292  T
Q  149 taacgtaaaagttatgttaagaaaagtgcaagttagatgcatgatgatttcgacaataa 207  Q
     |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  30111291 gaacgtaaaagttatgttaagaaaagtgcaagttagaggcatgatgatttcgacgataa 30111233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 12252805 - 12252855
Alignment:
Q  1 atatgatatcaaaataaatagacctaaaaataagttatgttagtttattga 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12252805 atatgatatcaaaataaatagacctaaaaataagttatgttagtttattga 12252855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 27418026 - 27418076
Alignment:
Q  1 atatgatatcaaaataaatagacctaaaaataagttatgttagtttattga 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27418026 atatgatatcaaaataaatagacctaaaaataagttatgttagtttattga 27418076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 152571 - 152521
Alignment:
Q  1 atatgatatcaaaataaatagacctaaaaataagttatgttagtttattga 51  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  152571 atatgatatcaaaataaatagatctaaaaataagttatgttagtttattga 152521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 35089475 - 35089525
Alignment:
Q  1 atatgatatcaaaataaatagacctaaaaataagttatgttagtttattga 51  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  35089475 atatgatatcaaaataaatagacctaaaaataagttatgttaatttattga 35089525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 43057046 - 43057096
Alignment:
Q  1 atatgatatcaaaataaatagacctaaaaataagttatgttagtttattga 51  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  43057046 atatgatatcaaaataaatagacctaaaaataagttatgttaatttattga 43057096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 33475203 - 33475153
Alignment:
Q  1 atatgatatcaaaataaatagacctaaaaataagttatgttagtttattga 51  Q
    |||||||||| |||||||||||||||||||||||||||| |||||||||||    
T  33475203 atatgatatccaaataaatagacctaaaaataagttatgatagtttattga 33475153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 47912952 - 47912902
Alignment:
Q  1 atatgatatcaaaataaatagacctaaaaataagttatgttagtttattga 51  Q
    |||| ||||||||||||||||||||||||||||| ||||||| ||||||||    
T  47912952 atataatatcaaaataaatagacctaaaaataagctatgttaatttattga 47912902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 47913701 - 47913751
Alignment:
Q  1 atatgatatcaaaataaatagacctaaaaataagttatgttagtttattga 51  Q
    |||| ||||||||||||||||||||||||||||| ||||||| ||||||||    
T  47913701 atataatatcaaaataaatagacctaaaaataagctatgttaatttattga 47913751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 30111501 - 30111456
Alignment:
Q  1 atatgatatcaaaataaatagacctaaaaataagttatgttagtttattga 51  Q
    |||||||||||||||||||||||||||||     |||||||||||||||||    
T  30111501 atatgatatcaaaataaatagacctaaaa-----ttatgttagtttattga 30111456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 133; Significance: 3e-69; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 51 - 235
Target Start/End: Complemental strand, 45319065 - 45318880
Alignment:
Q  51 aataccaatgaacgtaaagttttgatttttataataatttgatatataggtagatggtaaattaaccacaagattatacagtacattcnnnnnnn-aatt 149  Q
    |||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||        |||     
T  45319065 aatatcaatgaatgtaaagttgtgatttttataataatttgatatataggtagatggtaaattaaccacaagattatacggtacattcttttttttaatg 45318966  T
Q  150 aacgtaaaagttatgttaagaaaagtgcaagttagatgcatgatgatttcgacaataagtttgccaaacaaaatatataacctgcc 235  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  45318965 aacgtaaaagttatgttaagaaaagtgcaagttagaggcatgatgatttcgacaataagtttgccaaacaaaatatataacctgcc 45318880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 51 - 235
Target Start/End: Complemental strand, 52705989 - 52705804
Alignment:
Q  51 aataccaatgaacgtaaagttttgatttttataataatttgatatataggtagatggtaaattaaccacaagattatacagtacattcnnnnnnn-aatt 149  Q
    |||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||        |||     
T  52705989 aatatcaatgaacgtaaagttgtgatttttataataattagatatataggtagatggtaaattaaccacaagattatacggtacattcttttttttaatg 52705890  T
Q  150 aacgtaaaagttatgttaagaaaagtgcaagttagatgcatgatgatttcgacaataagtttgccaaacaaaatatataacctgcc 235  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |||||    
T  52705889 aacgtaaaagttatgttaagaaaagtgcaagttagaggcatgatgatttcgacaataagtttgtcaaacaaaatatataatctgcc 52705804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 52 - 235
Target Start/End: Original strand, 26882310 - 26882494
Alignment:
Q  52 ataccaatgaacgtaaagttttgatttttataataatttgatatataggtagatggtaaattaaccacaagattatacagtacattcnnnnnnn-aatta 150  Q
    |||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||| ||        ||| |    
T  26882310 ataccaatgaacgtaaagttgtgatttttataacaatttgatatataggtagatggtaaattaaccataagattatacaatacagtcttttttttaatga 26882409  T
Q  151 acgtaaaagttatgttaagaaaagtgcaagttagatgcatgatgatttcgacaataagtttgccaaacaaaatatataacctgcc 235  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  26882410 acgtaaaagttatgttaagaaaagtgcaagttagaggcatgatgatttcgacaataagtttgtcaaacaaaatatataacctgcc 26882494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 51 - 228
Target Start/End: Complemental strand, 45535359 - 45535177
Alignment:
Q  51 aataccaatgaacgtaaagttttgatttttataataatttgatatataggtagatggtaaattaaccacaagattatacagtacattc-----nnnnnnn 145  Q
    |||||||||||||||| |||| |||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||| |||                
T  45535359 aataccaatgaacgtagagttgtgatttttataataatttgatatataagtagatgataaattaaccataagattatacagtacgttctttttttttttt 45535260  T
Q  146 aattaacgtaaaagttatgttaagaaaagtgcaagttagatgcatgatgatttcgacaataagtttgccaaacaaaatatata 228  Q
    ||| |||||||| ||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||||||    
T  45535259 aatgaacgtaaatgttatgttaagaaaagtacaagttagaggcatgatgatttcgacaataaatttgccaaacaaaatatata 45535177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 158 - 235
Target Start/End: Complemental strand, 39758432 - 39758354
Alignment:
Q  158 agttatgttaagaaaagtgcaagttagatgcatgatgatttcgacaa-taagtttgccaaacaaaatatataacctgcc 235  Q
    |||| ||||||||||||||||||| ||| ||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  39758432 agttctgttaagaaaagtgcaagtcagaggcatgatgatttcgacaagcaagtttgccaaacaaaatatataacctgcc 39758354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 158 - 235
Target Start/End: Complemental strand, 39763786 - 39763708
Alignment:
Q  158 agttatgttaagaaaagtgcaagttagatgcatgatgatttcgacaa-taagtttgccaaacaaaatatataacctgcc 235  Q
    |||| ||||||||||||||||||| ||| ||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  39763786 agttctgttaagaaaagtgcaagtcagaggcatgatgatttcgacaagcaagtttgccaaacaaaatatataacctgcc 39763708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 14389097 - 14389047
Alignment:
Q  1 atatgatatcaaaataaatagacctaaaaataagttatgttagtttattga 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14389097 atatgatatcaaaataaatagacctaaaaataagttatgttagtttattga 14389047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 52706104 - 52706054
Alignment:
Q  1 atatgatatcaaaataaatagacctaaaaataagttatgttagtttattga 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52706104 atatgatatcaaaataaatagacctaaaaataagttatgttagtttattga 52706054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 26882194 - 26882244
Alignment:
Q  1 atatgatatcaaaataaatagacctaaaaataagttatgttagtttattga 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  26882194 atatgatatcaaaataaatagacctaaaaataagttatgttagtttcttga 26882244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 45319180 - 45319130
Alignment:
Q  1 atatgatatcaaaataaatagacctaaaaataagttatgttagtttattga 51  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  45319180 atatgatatcaaaataaatacacctaaaaataagttatgttagtttattga 45319130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 45535474 - 45535424
Alignment:
Q  1 atatgatatcaaaataaatagacctaaaaataagttatgttagtttattga 51  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  45535474 atatgatatcaaaataaatagacctaaaaataagttatgttaatttattga 45535424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0153 (Bit Score: 129; Significance: 7e-67; HSPs: 2)
Name: scaffold0153
Description:

Target: scaffold0153; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 51 - 235
Target Start/End: Original strand, 34300 - 34485
Alignment:
Q  51 aataccaatgaacgtaaagttttgatttttataataatttgatatataggtagatggtaaattaaccacaagattatacagtacattcnnnnnnn-aatt 149  Q
    |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||        |||     
T  34300 aatatcaatgaacgtaaagttatgatttttataataatttgatatataggtagatggtaaattaacaacaagattatacggtacattcttttttttaatg 34399  T
Q  150 aacgtaaaagttatgttaagaaaagtgcaagttagatgcatgatgatttcgacaataagtttgccaaacaaaatatataacctgcc 235  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  34400 aacgtaaaagttatgttaagaaaagtgcaagttagaggcatgatgattttgacaataagtttgccaaacaaaatatataacctgcc 34485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0153; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 34185 - 34235
Alignment:
Q  1 atatgatatcaaaataaatagacctaaaaataagttatgttagtttattga 51  Q
    |||||||||||||||||||| |||||||||||| |||||||||||||||||    
T  34185 atatgatatcaaaataaataaacctaaaaataaattatgttagtttattga 34235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 129; Significance: 7e-67; HSPs: 2)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 51 - 235
Target Start/End: Original strand, 81268 - 81453
Alignment:
Q  51 aataccaatgaacgtaaagttttgatttttataataatttgatatataggtagatggtaaattaaccacaagattatacagtacattcnnnnnnn-aatt 149  Q
    |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||        |||     
T  81268 aatatcaatgaacgtaaagttatgatttttataataatttgatatataggtagatggtaaattaacaacaagattatacggtacattcttttttttaatg 81367  T
Q  150 aacgtaaaagttatgttaagaaaagtgcaagttagatgcatgatgatttcgacaataagtttgccaaacaaaatatataacctgcc 235  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  81368 aacgtaaaagttatgttaagaaaagtgcaagttagaggcatgatgattttgacaataagtttgccaaacaaaatatataacctgcc 81453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 81153 - 81203
Alignment:
Q  1 atatgatatcaaaataaatagacctaaaaataagttatgttagtttattga 51  Q
    |||||||||||||||||||| |||||||||||| |||||||||||||||||    
T  81153 atatgatatcaaaataaataaacctaaaaataaattatgttagtttattga 81203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 128; Significance: 3e-66; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 51 - 235
Target Start/End: Original strand, 3109842 - 3110026
Alignment:
Q  51 aataccaatgaacgtaaagttttgatttttataataatttgatatataggtagatggtaaattaaccacaagattatacagtacattcnnnnnnnaatta 150  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||        | |     
T  3109842 aataccaatgaacgtaaagttgtgatttttataataatttgatatataggtagatggtaaattaaccacaagattatatagtagattcttttttttaatg 3109941  T
Q  151 acgtaaaagttatgttaagaaaagtgcaagttagatgcatgatgatttcgacaataagtttgccaaacaaaatatataacctgcc 235  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  3109942 acgtaaaagttatgttaagaaaagtgcaagtcagaggcatgatgatttcgacaataaatttgccaaacaaaatatataacctgcc 3110026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 51 - 235
Target Start/End: Original strand, 29865236 - 29865420
Alignment:
Q  51 aataccaatgaacgtaaagttttgatttttataataatttgatatataggtagatggtaaattaaccacaagattatacagtacattcnnnnnnnaatt- 149  Q
    |||||||||||||| |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||        |||     
T  29865236 aataccaatgaacgaaaagttgtgatttttataataatttgatatacaggtagatggtaaattaaccacaagattatacagtacattcttttttttattg 29865335  T
Q  150 aacgtaaaagttatgttaagaaaagtgcaagttagatgcatgatgatttcgacaataagtttgccaaacaaaatatataacctgcc 235  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||    
T  29865336 aacgtaaaagttatgttaagaaaagtgcaagttagaggcatgatgatttcgacaa-aagtttgccaaacaaaatatatatcctgcc 29865420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 51 - 207
Target Start/End: Original strand, 6476217 - 6476369
Alignment:
Q  51 aataccaatgaacgtaaagttttgatttttataataatttgatatataggtagatggtaaattaaccacaagattatacagtacattcnnnnnnnaatta 150  Q
    |||| |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||    || |||        | ||    
T  6476217 aatatcaatgaacgtaaagttgtgatttttataataattttatatataggtagatggtaaattaaccacaagattata----acgttcttttttttaata 6476312  T
Q  151 acgtaaaagttatgttaagaaaagtgcaagttagatgcatgatgatttcgacaataa 207  Q
    ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||    
T  6476313 acgtaaaagttatgttaagaaaagtgcaagttataggcatgatgatttcgacaataa 6476369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 3109727 - 3109777
Alignment:
Q  1 atatgatatcaaaataaatagacctaaaaataagttatgttagtttattga 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3109727 atatgatatcaaaataaatagacctaaaaataagttatgttagtttattga 3109777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 6476123 - 6476173
Alignment:
Q  1 atatgatatcaaaataaatagacctaaaaataagttatgttagtttattga 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6476123 atatgatatcaaaataaatagacctaaaaataagttatgttagtttattga 6476173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 29865121 - 29865171
Alignment:
Q  1 atatgatatcaaaataaatagacctaaaaataagttatgttagtttattga 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29865121 atatgatatcaaaataaatagacctaaaaataagttatgttagtttattga 29865171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 51 - 235
Target Start/End: Original strand, 20931 - 21115
Alignment:
Q  51 aataccaatgaacgtaaagttttgatttttataataatttgatatataggtagatggtaaattaaccacaagattatacagtacattcnnnnnnnaatt- 149  Q
    |||||||||||||| |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||        |||     
T  20931 aataccaatgaacgaaaagttgtgatttttataataatttgatatacaggtagatggtaaattaaccacaagattatacagtacattcttttttttattg 21030  T
Q  150 aacgtaaaagttatgttaagaaaagtgcaagttagatgcatgatgatttcgacaataagtttgccaaacaaaatatataacctgcc 235  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||    
T  21031 aacgtaaaagttatgttaagaaaagtgcaagttagaggcatgatgatttcgacaa-aagtttgccaaacaaaatatatatcctgcc 21115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 20816 - 20866
Alignment:
Q  1 atatgatatcaaaataaatagacctaaaaataagttatgttagtttattga 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20816 atatgatatcaaaataaatagacctaaaaataagttatgttagtttattga 20866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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