View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2635_low_13 (Length: 248)
Name: NF2635_low_13
Description: NF2635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2635_low_13 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 5 - 248
Target Start/End: Complemental strand, 31438238 - 31437995
Alignment:
| Q |
5 |
ttgagatgaacttccaagtccaagcaaaacattaccagttgaatcgaatctcagcatagatgagaatttaggaacctctccagatagattgttgttaggt |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
31438238 |
ttgagatgaacttccaagtccaagcaaaacattaccagttgaatcgaatctcagcatagatgagaatttaggaacctctccagatagattgttgttagat |
31438139 |
T |
|
| Q |
105 |
acatccaaaatctgaagatgtgccaaacttgtcaagctctcaggtattgaaccaatcaaattgttattacccaaatacaagttcctcaaatcagttaaat |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
31438138 |
acatccaaaatctgaagatgtgccaaacttgtcaagctctcaggtattgaaccaatcaaattgttatcacccaaatacaagttcctcaaatcagttaaat |
31438039 |
T |
|
| Q |
205 |
ttgcaaatgcaggtgaaatgattcctttcaatttctgtttcgcc |
248 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31438038 |
ttgcaaatgcaggtgaaatgattcctttcaatttctgtttcgcc |
31437995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 14 - 241
Target Start/End: Complemental strand, 15062556 - 15062329
Alignment:
| Q |
14 |
acttccaagtccaagcaaaacattaccagttgaatcgaatctcagcatagatgagaatttaggaacctctccagatagattgttgttaggtacatccaaa |
113 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||||| |||||| || |||| |||||||||||||| |||||||||||||||||||||| |||||| | | |
|
|
| T |
15062556 |
acttccaagtcgaagcaaaacattacccgttgaattgaatctgagtgtagaagagaatttaggaacatctccagatagattgttgttagatacatctaga |
15062457 |
T |
|
| Q |
114 |
atctgaagatgtgccaaacttgtcaagctctcaggtattgaaccaatcaaattgttattacccaaatacaagttcctcaaatcagttaaatttgcaaatg |
213 |
Q |
| |
|
| ||||||||| || ||||||||||||||| |||||||||||| |||||||||||| ||||||||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
15062456 |
acctgaagatgcgctaaacttgtcaagctcgaaggtattgaacctgtcaaattgttatcacccaaatacaagttcctcaaataagttaaacttgcaaatg |
15062357 |
T |
|
| Q |
214 |
caggtgaaatgattcctttcaatttctg |
241 |
Q |
| |
|
|||||||||| |||| |||| |||||| |
|
|
| T |
15062356 |
aaggtgaaatggttcccttcagtttctg |
15062329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 69 - 247
Target Start/End: Original strand, 38161012 - 38161190
Alignment:
| Q |
69 |
aatttaggaacctctccagatagattgttgttaggtacatccaaaatctgaagatgtgccaaacttgtcaagctctcaggtattgaaccaatcaaattgt |
168 |
Q |
| |
|
|||||||||| |||||||||||||||||| |||| || ||||||| || ||| || | ||||| ||||||||| | ||||||||||| ||||||| | |
|
|
| T |
38161012 |
aatttaggaatctctccagatagattgttattagacacgtccaaaacctcaagctgagtcaaacccgtcaagctccccggtattgaacctgtcaaattat |
38161111 |
T |
|
| Q |
169 |
tattacccaaatacaagttcctcaaatcagttaaatttgcaaatgcaggtgaaatgattcctttcaatttctgtttcgc |
247 |
Q |
| |
|
|| | || |||||| |||||||||||||| ||||| ||||||||| ||||| |||| ||||| ||||| ||||| |
|
|
| T |
38161112 |
taccattcagatacaaattcctcaaatcagtcaaattcccaaatgcagacgaaatagttccattcaaattctgcttcgc |
38161190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University