View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2635_low_15 (Length: 227)
Name: NF2635_low_15
Description: NF2635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2635_low_15 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 31809407 - 31809574
Alignment:
| Q |
1 |
aaaataagatgatgatttcaaacaaaagagtgagactacatactatatacatatataatagcacccnnnnnnngactatactatagtagaactgtagaag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
31809407 |
aaaataagatgatgatttcaaacaaaagagtgagactc-------tatacatatataatagcacccaaaaaaagactatactatagtagaactgtagaag |
31809499 |
T |
|
| Q |
101 |
tgaaagaacgactcaggaacattttttgacgtatctgtcatccaatttggactacaaactcaacaatttacatgt |
175 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31809500 |
tgaaagaacgactcaggaacattttttgacgtagctgtcatccaatttggactacaaactcaacaatttacatgt |
31809574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University