View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2635_low_16 (Length: 225)
Name: NF2635_low_16
Description: NF2635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2635_low_16 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 9 - 225
Target Start/End: Original strand, 43917994 - 43918206
Alignment:
| Q |
9 |
gaagaatatagtcgatttcctagattagcaaacaaaatgtttctaagaattaaaaattacgatttcaaaggaagatataaaagtagctgacaggtttggg |
108 |
Q |
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| T |
43917994 |
gaagaatatagtcgatttcctagattagcaaacaaaatgtttctaagaattaaaaattacgatttcaaaggaagatataaaagtagctgacaggtttggg |
43918093 |
T |
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| Q |
109 |
ccaacggtnnnnnnnnnnnnnnnnnngaccataacacaggctgttgttctgctatgaaatataggaactaatcacaaccaggcaatgaaagaccgtaaca |
208 |
Q |
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| T |
43918094 |
ccaacagt----aaaaaaaaaaaaaagaccataacacaggctgttgttctgctatgaaatataggaactaatcacaaccaggcaatgaaagaccgtaaca |
43918189 |
T |
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| Q |
209 |
taggcaggatatatatt |
225 |
Q |
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||||||||||||||||| |
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| T |
43918190 |
taggcaggatatatatt |
43918206 |
T |
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