View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2635_low_2 (Length: 514)
Name: NF2635_low_2
Description: NF2635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2635_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 18 - 334
Target Start/End: Original strand, 27535540 - 27535856
Alignment:
| Q |
18 |
ccttggtctataatttaagtttttaagacttaattaatactgcgtttgttaaataaatatgagttggtgtaaagcattctaagcatatgcaattatgatt |
117 |
Q |
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| T |
27535540 |
ccttggtctataatttaagtttttaagacttaattaatactgcgtttgttaaataaatatgagttggtgtaaagcattctaagcatatgcaattatgatt |
27535639 |
T |
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| Q |
118 |
tttatattttattgatgagaattatgataccatattgatcatcaattaaggaaaatcataagatattagtagaaattatgacaaacagcattctctcaag |
217 |
Q |
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| T |
27535640 |
tttatattttattgatgagaattatgataccatattgatcatcaattaaggaaaatcataagatattagtagaaattatgataaacagcatactcacaag |
27535739 |
T |
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| Q |
218 |
atcttaaggatataccgtgacattgattgatagttagttaaatttttggcctttgaaggaaacaaaactataactaaaattgaagggggcaattccataa |
317 |
Q |
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| T |
27535740 |
atcttaaggatataccgtgacattgattgatagttagttaaatttttggcttttgaaggaaacaaaactataactaaaattgaagggggcaattccataa |
27535839 |
T |
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| Q |
318 |
acttgacttgaatggac |
334 |
Q |
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| T |
27535840 |
acttgacttgaatggac |
27535856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 433 - 499
Target Start/End: Original strand, 27535955 - 27536021
Alignment:
| Q |
433 |
ctctctcaaataatgaaggaaaagaatggcataaaaagagggaaagagaaagagtgattaggatatt |
499 |
Q |
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| T |
27535955 |
ctctctcaaataatgaaggaaaagaatggcataaaaagagggaaagagaaagagtgatttggatatt |
27536021 |
T |
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