View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2635_low_3 (Length: 378)
Name: NF2635_low_3
Description: NF2635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2635_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 18 - 361
Target Start/End: Complemental strand, 31810192 - 31809844
Alignment:
| Q |
18 |
aattcaagtaaagttgagttttggaatttgttttccatgagtggctttttgtgtgtgctataattgtgaaggtgagtgagaattgaagaatgtgaagttc |
117 |
Q |
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| T |
31810192 |
aattcaagtaaagttgagttttggaatttgttttccatgagtggcttcttgtgtgtgctataattgtgaaggtgagtgagaattgaagaatgtgaagttc |
31810093 |
T |
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| Q |
118 |
tatttattatagtgttaggagagaaaaagaagaacaagagaggaaagtgtgacttttcttcgttgctctttctcaaattctactcaatcttctttgactt |
217 |
Q |
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| T |
31810092 |
tatttattatagtgttaggagagaaaaagaagaacaagagaggaaagtgtgacttttcttcgttgctctttctcaaattctactcaatcttctttgactt |
31809993 |
T |
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| Q |
218 |
gtatacttggtcacagtcaattattcaatgctaaagtgggacccatatgcgtgtttctttaaatcattgttggtcatgttcgtacgttggtgtcttcg-- |
315 |
Q |
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| T |
31809992 |
gtatacttggtcacagtcaattattcaatgctaaagtgggacccatatgcgtgtttctttaaatcattgttggtcatgttcgtacgttggtgtcttcgta |
31809893 |
T |
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| Q |
316 |
---tatcttcattcttcaacatgtttgcacgctgacctcttccttgttc |
361 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
31809892 |
tcgtatcttcattcttcaacatgtttgcacgctgacctcttcctcgttc |
31809844 |
T |
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