View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2635_low_6 (Length: 267)
Name: NF2635_low_6
Description: NF2635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2635_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 92; Significance: 9e-45; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 92 - 195
Target Start/End: Original strand, 16399663 - 16399766
Alignment:
| Q |
92 |
tgatgagattttacaattagttatataacatcaaggacctaagtatattcatttattttattctggataaaaacatttgatgatggaatgaaatcttatt |
191 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
16399663 |
tgatgagattttacaattagttatataacatcaaagacctaagtatattcatttattttattctggataaaaacatttgatgatcaaatgaaatcttatt |
16399762 |
T |
|
| Q |
192 |
tttc |
195 |
Q |
| |
|
|||| |
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|
| T |
16399763 |
tttc |
16399766 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 103 - 239
Target Start/End: Complemental strand, 22848700 - 22848563
Alignment:
| Q |
103 |
tacaattagttatataacatcaaggacctaagtatattcatttattttattctggataaaaacatttgatgatggaatgaaatcttatttttc-nnnnnn |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
22848700 |
tacaattagttatataacatcaaggacctaagtatattcatttattttattctggataaaaacatttgatgatcgaatgaaatcttatttttcaaaaaaa |
22848601 |
T |
|
| Q |
202 |
nnnttgactaaagcataaaaatcattaccaaagagtat |
239 |
Q |
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||||||||| ||||||||| ||||||||||||||| |
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|
| T |
22848600 |
aaattgactaaatcataaaaatgattaccaaagagtat |
22848563 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 89; Significance: 6e-43; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 103 - 195
Target Start/End: Complemental strand, 30886518 - 30886426
Alignment:
| Q |
103 |
tacaattagttatataacatcaaggacctaagtatattcatttattttattctggataaaaacatttgatgatggaatgaaatcttatttttc |
195 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
30886518 |
tacaattagttatataacatcaaggacctaagtatattcatttattttattctggataaaaacatttgatgattgaatgaaatcttatttttc |
30886426 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 95 - 195
Target Start/End: Complemental strand, 12524181 - 12524079
Alignment:
| Q |
95 |
tgagattttacaattagtta--tataacatcaaggacctaagtatattcatttattttattctggataaaaacatttgatgatggaatgaaatcttattt |
192 |
Q |
| |
|
|||||||||||||||||||| |||||||||| |||||||||| ||||||| |||||||| ||||||||||||||||||||| |||||||||||| ||| |
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| T |
12524181 |
tgagattttacaattagttaattataacatcatagacctaagtacattcattcattttattttggataaaaacatttgatgattgaatgaaatctttttt |
12524082 |
T |
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| Q |
193 |
ttc |
195 |
Q |
| |
|
||| |
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|
| T |
12524081 |
ttc |
12524079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 97 - 194
Target Start/End: Complemental strand, 792512 - 792413
Alignment:
| Q |
97 |
agattttacaattagtta--tataacatcaaggacctaagtatattcatttattttattctggataaaaacatttgatgatggaatgaaatcttattttt |
194 |
Q |
| |
|
|||||||||||||||||| |||||||||| ||||||||||| ||||||| |||||||| ||||||||||||||||||||| |||||||||||| ||||| |
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|
| T |
792512 |
agattttacaattagttaattataacatcatggacctaagtacattcattcattttattttggataaaaacatttgatgattgaatgaaatctttttttt |
792413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 95 - 194
Target Start/End: Complemental strand, 4053439 - 4053338
Alignment:
| Q |
95 |
tgagattttacaattagtta--tataacatcaaggacctaagtatattcatttattttattctggataaaaacatttgatgatggaatgaaatcttattt |
192 |
Q |
| |
|
|||||||||||||||||||| |||||||||| |||||||||| ||||||| |||||||| ||||||||||||||||||||| |||||||||||| ||| |
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| T |
4053439 |
tgagattttacaattagttaattataacatcatagacctaagtacattcattcattttattttggataaaaacatttgatgattgaatgaaatctttttt |
4053340 |
T |
|
| Q |
193 |
tt |
194 |
Q |
| |
|
|| |
|
|
| T |
4053339 |
tt |
4053338 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 95 - 194
Target Start/End: Original strand, 25070368 - 25070469
Alignment:
| Q |
95 |
tgagattttacaattagtta--tataacatcaaggacctaagtatattcatttattttattctggataaaaacatttgatgatggaatgaaatcttattt |
192 |
Q |
| |
|
|||||||||||||||||||| |||||||||| |||||||||| ||||||| |||||||| ||||||||||||||||||||| |||||||||||| ||| |
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| T |
25070368 |
tgagattttacaattagttaattataacatcatagacctaagtacattcattcattttattttggataaaaacatttgatgattgaatgaaatctttttt |
25070467 |
T |
|
| Q |
193 |
tt |
194 |
Q |
| |
|
|| |
|
|
| T |
25070468 |
tt |
25070469 |
T |
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