View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2635_low_7 (Length: 266)

Name: NF2635_low_7
Description: NF2635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2635_low_7
NF2635_low_7
[»] chr6 (5 HSPs)
chr6 (139-250)||(14618996-14619106)
chr6 (190-250)||(32080061-32080121)
chr6 (190-250)||(14611206-14611266)
chr6 (139-174)||(14611156-14611191)
chr6 (139-174)||(14620573-14620608)
[»] chr4 (5 HSPs)
chr4 (139-250)||(24807496-24807607)
chr4 (190-250)||(23985897-23985957)
chr4 (190-250)||(3529195-3529255)
chr4 (139-174)||(52545225-52545260)
chr4 (140-174)||(8005866-8005900)
[»] chr7 (3 HSPs)
chr7 (194-250)||(9878177-9878233)
chr7 (139-174)||(34844124-34844159)
chr7 (190-244)||(29598026-29598081)
[»] scaffold0006 (1 HSPs)
scaffold0006 (139-174)||(39217-39252)
[»] chr3 (3 HSPs)
chr3 (139-174)||(35243952-35243987)
chr3 (139-174)||(35244126-35244161)
chr3 (139-171)||(41874471-41874503)
[»] chr2 (3 HSPs)
chr2 (139-174)||(25302771-25302806)
chr2 (140-174)||(41602412-41602446)
chr2 (142-171)||(25306769-25306798)
[»] chr1 (1 HSPs)
chr1 (141-174)||(33773164-33773197)


Alignment Details
Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 139 - 250
Target Start/End: Original strand, 14618996 - 14619106
Alignment:
Q  139 caactaaactctatatataggaacactcatgtatcannnnnnnnnnnnnnnatcaaatctattgattctcctatgagtctctatagttatctcccacatg 238  Q
    ||||||||||||||||||||||||||||||||||||               ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  14618996 caactaaactctatatataggaacactcatgtatcatttcattatctttt-atcaaatctattgattctcctatgagtctctatggttatctcccacatg 14619094  T
Q  239 aatactactatg 250  Q
    ||||||||||||    
T  14619095 aatactactatg 14619106  T

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Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 190 - 250
Target Start/End: Original strand, 32080061 - 32080121
Alignment:
Q  190 atcaaatctattgattctcctatgagtctctatagttatctcccacatgaatactactatg 250  Q
    ||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||    
T  32080061 atcaaatctattgattctcctatgagtctctgtagttatctctcacatgaatactactatg 32080121  T

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Target: chr6; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 190 - 250
Target Start/End: Original strand, 14611206 - 14611266
Alignment:
Q  190 atcaaatctattgattctcctatgagtctctatagttatctcccacatgaatactactatg 250  Q
    ||||||| |||||||| |||||||||||||||| |||||||||||||||||||||||||||    
T  14611206 atcaaatatattgattatcctatgagtctctatggttatctcccacatgaatactactatg 14611266  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 139 - 174
Target Start/End: Original strand, 14611156 - 14611191
Alignment:
Q  139 caactaaactctatatataggaacactcatgtatca 174  Q
    |||||||||||||||||||||||||||| |||||||    
T  14611156 caactaaactctatatataggaacactcgtgtatca 14611191  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 139 - 174
Target Start/End: Original strand, 14620573 - 14620608
Alignment:
Q  139 caactaaactctatatataggaacactcatgtatca 174  Q
    ||||||||||||||||||||||| ||||||||||||    
T  14620573 caactaaactctatatataggaaaactcatgtatca 14620608  T

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Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 139 - 250
Target Start/End: Original strand, 24807496 - 24807607
Alignment:
Q  139 caactaaactctatatataggaacactcatgtatcannnnnnnnnnnnnnnatcaaatctattgattctcctatgagtctctatagttatctcccacatg 238  Q
    |||||||| |||||||||||||||||||||||||||               ||||||||||||||||||||||||||||||||| | |||||||||||||    
T  24807496 caactaaaatctatatataggaacactcatgtatcatttcaatcatcttttatcaaatctattgattctcctatgagtctctatggatatctcccacatg 24807595  T
Q  239 aatactactatg 250  Q
    ||||||||||||    
T  24807596 aatactactatg 24807607  T

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Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 190 - 250
Target Start/End: Original strand, 23985897 - 23985957
Alignment:
Q  190 atcaaatctattgattctcctatgagtctctatagttatctcccacatgaatactactatg 250  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||    
T  23985897 atcaaatctattgattctcctatgagtctctatggttatctcccacatgaatattactatg 23985957  T

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Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 190 - 250
Target Start/End: Complemental strand, 3529255 - 3529195
Alignment:
Q  190 atcaaatctattgattctcctatgagtctctatagttatctcccacatgaatactactatg 250  Q
    ||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||    
T  3529255 atcaaatctattgattctcctatgagtctctatggttattttccacatgaatactactatg 3529195  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 174
Target Start/End: Complemental strand, 52545260 - 52545225
Alignment:
Q  139 caactaaactctatatataggaacactcatgtatca 174  Q
    ||||||||||||||||||||||||||||||||||||    
T  52545260 caactaaactctatatataggaacactcatgtatca 52545225  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 174
Target Start/End: Original strand, 8005866 - 8005900
Alignment:
Q  140 aactaaactctatatataggaacactcatgtatca 174  Q
    |||||| ||||||||||||||||||||||||||||    
T  8005866 aactaatctctatatataggaacactcatgtatca 8005900  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 194 - 250
Target Start/End: Complemental strand, 9878233 - 9878177
Alignment:
Q  194 aatctattgattctcctatgagtctctatagttatctcccacatgaatactactatg 250  Q
    |||||||| ||||  |||||||||||||||| |||||||||||||||||||| ||||    
T  9878233 aatctattcattcaactatgagtctctatagatatctcccacatgaatactattatg 9878177  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 174
Target Start/End: Original strand, 34844124 - 34844159
Alignment:
Q  139 caactaaactctatatataggaacactcatgtatca 174  Q
    ||||||||||||||||||||||||||||||||||||    
T  34844124 caactaaactctatatataggaacactcatgtatca 34844159  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 190 - 244
Target Start/End: Complemental strand, 29598081 - 29598026
Alignment:
Q  190 atcaaatcta-ttgattctcctatgagtctctatagttatctcccacatgaatact 244  Q
    |||||||||| || ||||| |||||||||||||| | |||||||||||||||||||    
T  29598081 atcaaatctagttcattctactatgagtctctatgggtatctcccacatgaatact 29598026  T

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Target: scaffold0006 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 174
Target Start/End: Original strand, 39217 - 39252
Alignment:
Q  139 caactaaactctatatataggaacactcatgtatca 174  Q
    ||||||||||||||||||||||||||||||||||||    
T  39217 caactaaactctatatataggaacactcatgtatca 39252  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 174
Target Start/End: Complemental strand, 35243987 - 35243952
Alignment:
Q  139 caactaaactctatatataggaacactcatgtatca 174  Q
    ||||||||||||||||||||||||||||||||||||    
T  35243987 caactaaactctatatataggaacactcatgtatca 35243952  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 174
Target Start/End: Original strand, 35244126 - 35244161
Alignment:
Q  139 caactaaactctatatataggaacactcatgtatca 174  Q
    ||||||||||||||||||||||||||||||||||||    
T  35244126 caactaaactctatatataggaacactcatgtatca 35244161  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 171
Target Start/End: Original strand, 41874471 - 41874503
Alignment:
Q  139 caactaaactctatatataggaacactcatgta 171  Q
    |||||||||||||||||||||||||||||||||    
T  41874471 caactaaactctatatataggaacactcatgta 41874503  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 139 - 174
Target Start/End: Original strand, 25302771 - 25302806
Alignment:
Q  139 caactaaactctatatataggaacactcatgtatca 174  Q
    |||||||||||||||||||||| |||||||||||||    
T  25302771 caactaaactctatatataggatcactcatgtatca 25302806  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 174
Target Start/End: Original strand, 41602412 - 41602446
Alignment:
Q  140 aactaaactctatatataggaacactcatgtatca 174  Q
    ||||||| |||||||||||||||||||||||||||    
T  41602412 aactaaattctatatataggaacactcatgtatca 41602446  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 142 - 171
Target Start/End: Original strand, 25306769 - 25306798
Alignment:
Q  142 ctaaactctatatataggaacactcatgta 171  Q
    ||||||||||||||||||||||||||||||    
T  25306769 ctaaactctatatataggaacactcatgta 25306798  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 141 - 174
Target Start/End: Original strand, 33773164 - 33773197
Alignment:
Q  141 actaaactctatatataggaacactcatgtatca 174  Q
    ||||||||||||||||| ||||||||||||||||    
T  33773164 actaaactctatatataagaacactcatgtatca 33773197  T

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