View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2635_low_9 (Length: 259)
Name: NF2635_low_9
Description: NF2635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2635_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 15 - 230
Target Start/End: Original strand, 30054519 - 30054736
Alignment:
| Q |
15 |
agagacagtcaatgatttgatattagaaaactagtagtagccagttgagtaggactgcagattcatcttccaacgggcgatt---gaatccgatgtctgc |
111 |
Q |
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| T |
30054519 |
agagacagtcaatgatttgatattagaaaact-gtagtagccagttgagtaggactgcagattcgtcttccaaggggcgattaatgaatccgatgtctgc |
30054617 |
T |
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| Q |
112 |
atccttgtaaacgtgtttaacagaacaaagatggatatggcatggtttttggttgagagatccaataaaagaaaagttggaaagcaaatgagcagatatg |
211 |
Q |
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| T |
30054618 |
atccatgtaaacatgtttaacagaacaaagatggatatggcatggtttttggttgagagatccaataaaagaaaagttggaaagcaaatgagcagatatg |
30054717 |
T |
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| Q |
212 |
ttgcacatcaaactagcat |
230 |
Q |
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| T |
30054718 |
ttgccaatcaaactagcat |
30054736 |
T |
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