View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2636_high_2 (Length: 288)
Name: NF2636_high_2
Description: NF2636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2636_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 88 - 204
Target Start/End: Complemental strand, 20248790 - 20248673
Alignment:
| Q |
88 |
tgtcaaacaaatgatgt-aaccctgatgacagaacaattgctttaaatgaaaacttcaatgcatatgaagttatgggtataaaaaagaaggatggtgtat |
186 |
Q |
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| T |
20248790 |
tgtcaaacaaattatgttaactctgatgacagaacaattgctttgaatgaaaacttcaatgcatctgaagttatgggtataaaaaagaaggatggtgtat |
20248691 |
T |
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| Q |
187 |
ccagaagaaaaggtagac |
204 |
Q |
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| T |
20248690 |
ccagaggaaaaggtagac |
20248673 |
T |
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Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 36 - 90
Target Start/End: Complemental strand, 23881429 - 23881375
Alignment:
| Q |
36 |
attagccacacatgttgaaatctcatatgttataaaagtttgtactctatgctgt |
90 |
Q |
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| T |
23881429 |
attagccacacatgttgaaatctcatctgttataaaagtttgtactctatgctgt |
23881375 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 5 - 90
Target Start/End: Original strand, 52610601 - 52610686
Alignment:
| Q |
5 |
attttttctctgttttgatgttgttattggcattagccacacatgttgaaatctcatatgttataaaagtttgtactctatgctgt |
90 |
Q |
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| T |
52610601 |
atttattctccgttttgatgttgttattggcattagccacacatgttgaaatctcatctgttataaaagtttgcactctatgctgt |
52610686 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 31330937 - 31331009
Alignment:
| Q |
13 |
tctgttttgatgttgttattggcattagccacacatgttgaaatctcatatgttataaaagtttgtactctat |
85 |
Q |
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| T |
31330937 |
tctgttttcatgttgttattggcattagccacatgtgttgaaattccatctgttataaaaatttgtaatctat |
31331009 |
T |
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