View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2637_high_2 (Length: 369)
Name: NF2637_high_2
Description: NF2637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2637_high_2 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 17 - 369
Target Start/End: Complemental strand, 41921230 - 41920879
Alignment:
| Q |
17 |
aagtagaagtaccatataacatttactatttagaaatcattgaatgccagagtttttaaaagtggtttgcaactgccatccgagtcacgacataaaagtt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41921230 |
aagtagaagtaccatataacatttactatttagaaatcattgaatgccagagtttttaaaagtggtttgcaactgccatccgagtcacgacataaaagtt |
41921131 |
T |
|
| Q |
117 |
tctgcaacatctatgcgaccacaatttactattggtcgcatcagttgcttagattgcgatgctctaaatattaaagattgtgacacaatcatgattaaaa |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41921130 |
tctgcaacatctatgcgaccacaatttactattggtcgcatcagttgcttaaattgcgatgctctaaatattaaagattgtgacacaatcatgattaaaa |
41921031 |
T |
|
| Q |
217 |
aactagttgaatgctaccaaataactaagacaatagtactgatttatacctgtcttcaatcctgaatcgaggcttcttgagtgctttagtccctgcttta |
316 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41921030 |
aactagttgaatgctatcaaataactaagacaatagtactaatttatacctgtcttcaatcctgaatcgaggcttcttgagtgctttagtccctgcttta |
41920931 |
T |
|
| Q |
317 |
gccttgagagcatctccaagtttctcagtgacaatccattcatctcactcgac |
369 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
41920930 |
gccttgagagcatctccaagtttctcagtgacaatccattcat-tcactcgac |
41920879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 6e-19; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 259 - 359
Target Start/End: Original strand, 26829762 - 26829862
Alignment:
| Q |
259 |
tttatacctgtcttcaatcctgaatcgaggcttcttgagtgctttagtccctgctttagccttgagagcatctccaagtttctcagtgacaatccattca |
358 |
Q |
| |
|
||||||||||||| ||||||| |||||| |||| |||||| ||||| | |||||| |||||| ||||||||||||||| |||||||||||||||||| |
|
|
| T |
26829762 |
tttatacctgtctccaatcctaaatcgaagctttttgagtcctttaccactagctttacccttgaaagcatctccaagtttttcagtgacaatccattca |
26829861 |
T |
|
| Q |
359 |
t |
359 |
Q |
| |
|
| |
|
|
| T |
26829862 |
t |
26829862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 258 - 359
Target Start/End: Original strand, 26789245 - 26789346
Alignment:
| Q |
258 |
atttatacctgtcttcaatcctgaatcgaggcttcttgagtgctttagtccctgctttagccttgagagcatctccaagtttctcagtgacaatccattc |
357 |
Q |
| |
|
|||| ||||||||| |||| | |||||| |||| |||||| ||||| || ||||| |||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
26789245 |
atttttacctgtctacaattttaaatcgaagctttttgagttctttaccaccatctttacccttgagagcatctccaagtttttcagtgacaatccattc |
26789344 |
T |
|
| Q |
358 |
at |
359 |
Q |
| |
|
|| |
|
|
| T |
26789345 |
at |
26789346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 320 - 359
Target Start/End: Original strand, 26816137 - 26816176
Alignment:
| Q |
320 |
ttgagagcatctccaagtttctcagtgacaatccattcat |
359 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
26816137 |
ttgagagcatctccaagtttttcagtgacaatccattcat |
26816176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University