View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2637_low_1 (Length: 491)
Name: NF2637_low_1
Description: NF2637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2637_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 84; Significance: 1e-39; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 341 - 439
Target Start/End: Original strand, 23369404 - 23369503
Alignment:
| Q |
341 |
ttaatctaatacgcgaacaaatttgaaacaaaatgttagaattaccgtgttaaatgacta-ttttttaatatttggagcaattttacctatttgtatata |
439 |
Q |
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| T |
23369404 |
ttaatctaatacgcgaacaaatttgaaacaaaatgttagaattaccgtgttaaatgactatttttttaacatttggagaaattttacctatttgtatata |
23369503 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 243 - 345
Target Start/End: Original strand, 23369113 - 23369215
Alignment:
| Q |
243 |
attgagtttaatcccctacatatgaggttattattagggggtccccattcataggagaaaattggcatccctatatagggttatatctaagatcctgatt |
342 |
Q |
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| T |
23369113 |
attgagtttaaccccctacatatgaggttattattaggggtcccccattcataggagaaaattggcatccctatatagggttgtatctaagttcctgatt |
23369212 |
T |
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| Q |
343 |
aat |
345 |
Q |
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| T |
23369213 |
aat |
23369215 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 23368928 - 23368978
Alignment:
| Q |
19 |
gtttggatttaggagattccatattgtaattccgaggttgtagcatttgat |
69 |
Q |
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| T |
23368928 |
gtttggatttaggagattccatattgtaattccgaggttgtagcatttgat |
23368978 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 91 - 132
Target Start/End: Original strand, 23368969 - 23369010
Alignment:
| Q |
91 |
agcatttgatatattgttggaatctctttaagtaatatttgc |
132 |
Q |
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| T |
23368969 |
agcatttgatatattgttggaatctctttaaggaatatttgc |
23369010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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