View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2637_low_10 (Length: 266)

Name: NF2637_low_10
Description: NF2637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2637_low_10
NF2637_low_10
[»] chr2 (4 HSPs)
chr2 (1-259)||(43412682-43412943)
chr2 (72-154)||(929010-929092)
chr2 (16-138)||(34504177-34504300)
chr2 (14-62)||(22651102-22651150)
[»] chr7 (5 HSPs)
chr7 (72-154)||(32854239-32854321)
chr7 (75-138)||(48723328-48723391)
chr7 (72-136)||(29724368-29724432)
chr7 (16-129)||(42121329-42121442)
chr7 (72-154)||(33645263-33645349)
[»] chr3 (8 HSPs)
chr3 (16-139)||(48855510-48855633)
chr3 (16-155)||(53683921-53684061)
chr3 (72-138)||(54362031-54362097)
chr3 (16-135)||(37311647-37311766)
chr3 (85-137)||(32737826-32737878)
chr3 (15-58)||(53436172-53436215)
chr3 (72-114)||(34408058-34408100)
chr3 (72-132)||(43271651-43271711)
[»] chr5 (5 HSPs)
chr5 (17-130)||(141319-141432)
chr5 (72-136)||(6818578-6818642)
chr5 (16-62)||(12289080-12289126)
chr5 (72-138)||(29429610-29429676)
chr5 (84-158)||(6809624-6809698)
[»] chr1 (2 HSPs)
chr1 (74-157)||(31820642-31820724)
chr1 (72-137)||(3150653-3150718)
[»] chr4 (4 HSPs)
chr4 (16-154)||(3527864-3528003)
chr4 (72-138)||(50685593-50685659)
chr4 (16-137)||(8488651-8488772)
chr4 (72-157)||(13901996-13902080)
[»] chr6 (2 HSPs)
chr6 (73-138)||(7509734-7509799)
chr6 (16-62)||(5456575-5456621)
[»] chr8 (1 HSPs)
chr8 (81-135)||(12883128-12883182)


Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-104; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 43412943 - 43412682
Alignment:
Q  1 aaacaatctaaaaataaaagtagaaatattctcttaaattttgtgtattaagttaatcaaaatgnnnnnnnttaaattctaatgcattgatta---gaac 97  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||       ||||||||||||| |||||||    || |    
T  43412943 aaacaatctaaaaataaaagtagaaacattctcttaaattttgtgtattaaattaatcaaaatgaaaaaaattaaattctaatgtattgattttttgagc 43412844  T
Q  98 aaattatttccacttttaactaattaacttgtgccttaaggatacacgttagcattttccaatacaaaataatattttctcgcttatatattcgctcgca 197  Q
    |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  43412843 aaattatttccacttttaactaattaacttgtgccttaagggcacacgttagcattttccaatacaaaataatattttctcacttatatattcgctcgca 43412744  T
Q  198 tatgtgaggaacactagatttggttttcccccattctaagttgctctaacatagtattatct 259  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  43412743 tatgtgaggaacactagatttggttttcccccattctaagttgctctaacatagtataatct 43412682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 72 - 154
Target Start/End: Complemental strand, 929092 - 929010
Alignment:
Q  72 ttaaattctaatgcattgattagaacaaattatttccacttttaactaattaacttgtgccttaaggatacacgttagcattt 154  Q
    |||||||| ||||||||||||| |||||| |||||| |||||| |||  |||||||||| |||||||| ||| |||| |||||    
T  929092 ttaaattcaaatgcattgattacaacaaaatatttctacttttgactctttaacttgtgtcttaaggacacaagttaacattt 929010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 138
Target Start/End: Complemental strand, 34504300 - 34504177
Alignment:
Q  16 aaaagtagaaatattctcttaaattttgtgtattaagttaatcaaaa-tgnnnnnnnttaaattctaatgcattgattagaacaaattatttccactttt 114  Q
    ||||||| |||||||||||||||||||||| ||| | ||||| |||| |         ||||||| ||||||||||||  ||||| ||||||| ||||||    
T  34504300 aaaagtaaaaatattctcttaaattttgtgcattcaattaattaaaagtaaaaaaaactaaattcaaatgcattgattgcaacaacttatttctactttt 34504201  T
Q  115 aactaattaacttgtgccttaagg 138  Q
     | | ||||||||||| |||||||    
T  34504200 gattcattaacttgtgtcttaagg 34504177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 62
Target Start/End: Original strand, 22651102 - 22651150
Alignment:
Q  14 ataaaagtagaaatattctcttaaattttgtgtattaagttaatcaaaa 62  Q
    |||||| |||||||||||||||||||||| || ||| | ||||||||||    
T  22651102 ataaaaatagaaatattctcttaaattttatgcattcaattaatcaaaa 22651150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 72 - 154
Target Start/End: Complemental strand, 32854321 - 32854239
Alignment:
Q  72 ttaaattctaatgcattgattagaacaaattatttccacttttaactaattaacttgtgccttaaggatacacgttagcattt 154  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||||  ||||||  ||| ||||||||||    
T  32854321 ttaatttcaaatgcattgattagaacaaattatttccacttttaactcattaacttgtgttttaagggcacaggttagcattt 32854239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 75 - 138
Target Start/End: Original strand, 48723328 - 48723391
Alignment:
Q  75 aattctaatgcattgattagaacaaattatttccacttttaactaattaacttgtgccttaagg 138  Q
    ||||| |||||||| |||| |||||| |||||||||||| |||| |||||||||||||||||||    
T  48723328 aattcaaatgcattcattacaacaaaatatttccactttaaactcattaacttgtgccttaagg 48723391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 136
Target Start/End: Original strand, 29724368 - 29724432
Alignment:
Q  72 ttaaattctaatgcattgattagaacaaattatttccacttttaactaattaacttgtgccttaa 136  Q
    |||||||| |||||||| |||| ||||||||||||| |||||| ||| ||| |||||| ||||||    
T  29724368 ttaaattcaaatgcatttattacaacaaattatttctacttttgacttatttacttgtaccttaa 29724432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 129
Target Start/End: Complemental strand, 42121442 - 42121329
Alignment:
Q  16 aaaagtagaaatattctcttaaattttgtgtattaagttaatcaaaatgnnnnnnnttaaattctaatgcattgattagaacaaattatttccactttta 115  Q
    ||||||||||| |||||||||||||||||  ||| | ||||| ||||         |||||||| |||||||| |||| ||||||||||||  | |||||    
T  42121442 aaaagtagaaacattctcttaaattttgtacattcaattaatgaaaagtgaaaaaattaaattcaaatgcattaattacaacaaattatttatattttta 42121343  T
Q  116 actaattaacttgt 129  Q
    ||| ||||||||||    
T  42121342 actcattaacttgt 42121329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 72 - 154
Target Start/End: Original strand, 33645263 - 33645349
Alignment:
Q  72 ttaaattctaatgcattgattagaacaaattatttccacttttaact-----aattaacttgtgccttaaggatacacgttagcattt 154  Q
    |||||||| ||||||||| ||| |||||||||||||||||||| |||      |||||||||||||||||||  ||| ||||||||||    
T  33645263 ttaaattcaaatgcattg-ttacaacaaattatttccacttttgactcattacattaacttgtgccttaagggcacaagttagcattt 33645349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 16 - 139
Target Start/End: Original strand, 48855510 - 48855633
Alignment:
Q  16 aaaagtagaaatattctcttaaattttgtgtattaagttaatcaaaatgnnnnnnnttaaattctaatgcattgattagaacaaattatttccactttta 115  Q
    |||||||||||||||||||| ||||||||||||| | |||||| |||         |||||||| |||| ||| |||| ||||| |||||||||||||||    
T  48855510 aaaagtagaaatattctcttgaattttgtgtattcaattaatctaaaattaaagaattaaattcaaatgaattaattacaacaatttatttccactttta 48855609  T
Q  116 actaattaacttgtgccttaagga 139  Q
     || ||||||||||||||||||||    
T  48855610 gctcattaacttgtgccttaagga 48855633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 155
Target Start/End: Complemental strand, 53684061 - 53683921
Alignment:
Q  16 aaaagtagaaatattctcttaaattttgtgtattaagttaatcaaaatgnnnnnnn-ttaaattctaatgcattgattagaacaaattatttccactttt 114  Q
    ||||||||||||||||||||| |||||||||||| | |||||||||| |        |||||||| ||| |||| |||| |||||||||||| |||||||    
T  53684061 aaaagtagaaatattctcttatattttgtgtattcaattaatcaaaaagtcaaaaaattaaattcaaatacattaattaaaacaaattattttcactttt 53683962  T
Q  115 aactaattaacttgtgccttaaggatacacgttagcatttt 155  Q
      || |||||||||||||||||||  ||| |||| ||||||    
T  53683961 ggctcattaacttgtgccttaagggcacaagttaacatttt 53683921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 72 - 138
Target Start/End: Complemental strand, 54362097 - 54362031
Alignment:
Q  72 ttaaattctaatgcattgattagaacaaattatttccacttttaactaattaacttgtgccttaagg 138  Q
    |||||||| ||||||||||||| ||| || |||||| |||||| ||| |||||||||||||||||||    
T  54362097 ttaaattcaaatgcattgattacaaccaaatatttctacttttgactcattaacttgtgccttaagg 54362031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 135
Target Start/End: Complemental strand, 37311766 - 37311647
Alignment:
Q  16 aaaagtagaaatattctcttaaattttgtgtattaagttaatcaaaatgnnnnnnnttaaattctaatgcattgattagaacaaattatttccactttta 115  Q
    ||||||||||| ||||||||  |||||||| ||| | ||||||||||         |||||||| |||||||| |||| ||||||||||||  ||||||     
T  37311766 aaaagtagaaacattctcttgtattttgtgcattcaattaatcaaaagtcaaaaaattaaattcaaatgcattaattacaacaaattatttatacttttg 37311667  T
Q  116 actaattaacttgtgcctta 135  Q
     || ||||||||||||||||    
T  37311666 tctcattaacttgtgcctta 37311647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 137
Target Start/End: Original strand, 32737826 - 32737878
Alignment:
Q  85 cattgattagaacaaattatttccacttttaactaattaacttgtgccttaag 137  Q
    ||||||||| |||||||||||| || |||| ||| ||||||||||||||||||    
T  32737826 cattgattacaacaaattattttcatttttgactcattaacttgtgccttaag 32737878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 58
Target Start/End: Original strand, 53436172 - 53436215
Alignment:
Q  15 taaaagtagaaatattctcttaaattttgtgtattaagttaatc 58  Q
    |||||||||||||||| |||||||||||||||||| | ||||||    
T  53436172 taaaagtagaaatattttcttaaattttgtgtatttaattaatc 53436215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 114
Target Start/End: Complemental strand, 34408100 - 34408058
Alignment:
Q  72 ttaaattctaatgcattgattagaacaaattatttccactttt 114  Q
    |||||||  ||||||||||||| ||||||||||||||||||||    
T  34408100 ttaaatttaaatgcattgattacaacaaattatttccactttt 34408058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 132
Target Start/End: Complemental strand, 43271711 - 43271651
Alignment:
Q  72 ttaaattctaatgcattgattagaacaaattatttccacttttaactaattaacttgtgcc 132  Q
    |||||||| |||||||| |||| |||| | ||||||||||||| | | |||||||||||||    
T  43271711 ttaaattcaaatgcatttattacaacagaatatttccacttttgattcattaacttgtgcc 43271651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 130
Target Start/End: Complemental strand, 141432 - 141319
Alignment:
Q  17 aaagtagaaatattctcttaaattttgtgtattaagttaatcaaaatgnnnnnnnttaaattctaatgcattgattagaacaaattatttccacttttaa 116  Q
    ||||||||||||||||||| ||||||||| ||| | ||||||||||         |||||||| |||||||| |||| ||||| |||||||||||||||     
T  141432 aaagtagaaatattctcttgaattttgtgcattcaattaatcaaaagttaaagaattaaattcaaatgcattaattacaacaatttatttccacttttag 141333  T
Q  117 ctaattaacttgtg 130  Q
    || |||||||||||    
T  141332 ctcattaacttgtg 141319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 72 - 136
Target Start/End: Complemental strand, 6818642 - 6818578
Alignment:
Q  72 ttaaattctaatgcattgattagaacaaattatttccacttttaactaattaacttgtgccttaa 136  Q
    |||||||| ||| ||||||||| |||||||||||| || |||||||| |||||||||||| ||||    
T  6818642 ttaaattcaaatacattgattacaacaaattattttcatttttaactcattaacttgtgctttaa 6818578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 62
Target Start/End: Complemental strand, 12289126 - 12289080
Alignment:
Q  16 aaaagtagaaatattctcttaaattttgtgtattaagttaatcaaaa 62  Q
    |||||||||||||||||||| ||||||||||||| | ||||||||||    
T  12289126 aaaagtagaaatattctcttgaattttgtgtattcaattaatcaaaa 12289080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 72 - 138
Target Start/End: Complemental strand, 29429676 - 29429610
Alignment:
Q  72 ttaaattctaatgcattgattagaacaaattatttccacttttaactaattaacttgtgccttaagg 138  Q
    |||||||| |||| ||| |||| |||||| ||||||||||||| |||  ||||||||||||||||||    
T  29429676 ttaaattcaaatgtattaattacaacaaaatatttccacttttgactctttaacttgtgccttaagg 29429610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 158
Target Start/End: Complemental strand, 6809698 - 6809624
Alignment:
Q  84 gcattgattagaacaaattatttccacttttaactaattaacttgtgccttaaggatacacgttagcattttcca 158  Q
    ||||||||||  ||||||||||||||||||| |||  ||||||||||  |||| || ||| |||| |||||||||    
T  6809698 gcattgattacgacaaattatttccacttttgactctttaacttgtgttttaaagacacaagttaacattttcca 6809624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 74 - 157
Target Start/End: Original strand, 31820642 - 31820724
Alignment:
Q  74 aaattctaatgcattgattagaacaaattatttccacttttaactaattaacttgtgccttaaggatacacgttagcattttcc 157  Q
    |||||| ||||| ||||||| |||||||||||||||||||| ||| ||||||||| |||||||||  ||| |||| ||||||||    
T  31820642 aaattcaaatgc-ttgattacaacaaattatttccacttttgacttattaacttgcgccttaagggcacaagttaacattttcc 31820724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 72 - 137
Target Start/End: Complemental strand, 3150718 - 3150653
Alignment:
Q  72 ttaaattctaatgcattgattagaacaaattatttccacttttaactaattaacttgtgccttaag 137  Q
    |||||||| |||| ||| |||| |||||||||||||||||||| |||  |||||||||| ||||||    
T  3150718 ttaaattcaaatgtattaattacaacaaattatttccacttttgacttgttaacttgtgtcttaag 3150653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 154
Target Start/End: Complemental strand, 3528003 - 3527864
Alignment:
Q  16 aaaagtagaaatattctcttaaattttgtgtattaagttaatcaaaa-tgnnnnnnnttaaattctaatgcattgattagaacaaattatttccactttt 114  Q
    ||||||||||| ||||||||| |||||||| ||| | |||||||||| |        |||||||| ||||||||||||| |||||| |||||| |||||     
T  3528003 aaaagtagaaacattctcttatattttgtgcattcaattaatcaaaaataaaataaattaaattcaaatgcattgattacaacaaaatatttctactttg 3527904  T
Q  115 aactaattaacttgtgccttaaggatacacgttagcattt 154  Q
     ||| ||| ||||||| |||||||| ||| |||| |||||    
T  3527903 gacttattgacttgtgtcttaaggacacatgttaacattt 3527864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 72 - 138
Target Start/End: Complemental strand, 50685659 - 50685593
Alignment:
Q  72 ttaaattctaatgcattgattagaacaaattatttccacttttaactaattaacttgtgccttaagg 138  Q
    |||||||| ||| |||| |||| ||||||||||||||||||||  || |||||||||||||||||||    
T  50685659 ttaaattcaaatacatttattacaacaaattatttccacttttggctcattaacttgtgccttaagg 50685593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 137
Target Start/End: Original strand, 8488651 - 8488772
Alignment:
Q  16 aaaagtagaaatattctcttaaattttgtgtattaagttaatcaaaatgnnnnnnnttaaattctaatgcattgattagaacaaattatttccactttta 115  Q
    ||||||||||| ||||||||  |||||||||||| | ||||||||||         |||||||| |||||||| |||| | ||||||||||||  |||||    
T  8488651 aaaagtagaaacattctcttgtattttgtgtattcaattaatcaaaagtcaaaaaattaaattcaaatgcattaattacaccaaattatttcctttttta 8488750  T
Q  116 actaattaacttgtgccttaag 137  Q
     || |||||||||||| |||||    
T  8488751 gctcattaacttgtgctttaag 8488772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 72 - 157
Target Start/End: Complemental strand, 13902080 - 13901996
Alignment:
Q  72 ttaaattctaatgcattgattagaacaaattatttccacttttaactaattaacttgtgccttaaggatacacgttagcattttcc 157  Q
    |||||||| ||||||||||||| ||| || |||||| |||||| ||| |||| ||| |||||||| | |||| |||| ||||||||    
T  13902080 ttaaattcaaatgcattgattacaaccaaatatttctacttttgactcattacctt-tgccttaaaggtacaagttaacattttcc 13901996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 73 - 138
Target Start/End: Original strand, 7509734 - 7509799
Alignment:
Q  73 taaattctaatgcattgattagaacaaattatttccacttttaactaattaacttgtgccttaagg 138  Q
    ||||||| ||||||||||||| |||| | |||||| |||||| ||| |||||||||||||||||||    
T  7509734 taaattcaaatgcattgattacaacacaatatttctacttttgactcattaacttgtgccttaagg 7509799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 62
Target Start/End: Original strand, 5456575 - 5456621
Alignment:
Q  16 aaaagtagaaatattctcttaaattttgtgtattaagttaatcaaaa 62  Q
    |||| ||||||||||||||| ||||||||||||| | ||||||||||    
T  5456575 aaaaatagaaatattctcttgaattttgtgtattcaattaatcaaaa 5456621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 81 - 135
Target Start/End: Original strand, 12883128 - 12883182
Alignment:
Q  81 aatgcattgattagaacaaattatttccacttttaactaattaacttgtgcctta 135  Q
    |||||||| |||| |||||||||||| ||||| ||||| ||||||||||||||||    
T  12883128 aatgcattaattacaacaaattattttcacttataactcattaacttgtgcctta 12883182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University