View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2637_low_11 (Length: 262)
Name: NF2637_low_11
Description: NF2637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2637_low_11 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 16 - 262
Target Start/End: Original strand, 35742502 - 35742745
Alignment:
| Q |
16 |
caagcaatctttcaaacccagagaaatcagatggaattgacaagtcaaatcctaaaaatttagagtacgtcaattccttacaagggaggaggtcgacaat |
115 |
Q |
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| T |
35742502 |
caagcaatctttcaaacccagagaaatcaggtggaattgacaagtcaaatcctaaaaacttagagtacgtcaattccttacaagggag---gtcgacaat |
35742598 |
T |
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| Q |
116 |
atatagcatttgatcgggatgtgtttcgtggttcacaagctcgagatgtttaatattcctctctgaccaaatcggaatccacttatcgaggtgttcaatt |
215 |
Q |
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| T |
35742599 |
atatagcatttgatcgggatgtgtttcgtggttcacaagctcgagatgtttaatattcctctctgacaaaatcggaatccacttatcgaggtgttcaatt |
35742698 |
T |
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| Q |
216 |
gtgatctcaaatttgtagtcattagatatgaaaagaccaaacttatc |
262 |
Q |
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| T |
35742699 |
gtgatctcaaatttgtagtcattagatatgaaaagaccaaacttatc |
35742745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 17 - 261
Target Start/End: Original strand, 35748871 - 35749109
Alignment:
| Q |
17 |
aagcaatctttcaaacccagagaaatcagatggaattgacaagtcaaatcctaaaaatttagagtacgtcaattccttacaagggaggaggtcgacaata |
116 |
Q |
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| T |
35748871 |
aagcaatcttttaaagcctcagaaatcatgtggaattgacaagttaaatccggaaaatttgaagtaagtcaactccttacaagcgagga------cagta |
35748964 |
T |
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| Q |
117 |
tatagcatttgatcgggatgtgtttcgtggttcacaagctcgagatgtttaatattcctctctgaccaaatcggaatccacttatcgaggtgttcaattg |
216 |
Q |
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| T |
35748965 |
tatggcatttgatcgacatgtgttccgtagttcaaaagctcgagatgtttaatatccctcctagacaagaacggaatccacgtactgaggaattcaatta |
35749064 |
T |
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| Q |
217 |
tgatctcaaatttgtagtcattagatatgaaaagaccaaacttat |
261 |
Q |
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| T |
35749065 |
tgatcttgaaattgtagtcataaggtatgaaaagatgaaacttat |
35749109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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