View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2637_low_12 (Length: 247)
Name: NF2637_low_12
Description: NF2637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2637_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 41920882 - 41920638
Alignment:
| Q |
1 |
cgactagcctccagtagaccaataacagttgcctttgctctatgcagagacatgacattctcaaatagaatccaaaagacgagtaaatggagtgacctga |
100 |
Q |
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| T |
41920882 |
cgactagcctccagtagaccaataacagttgcctttgctctatgcagagacatgacattctcaaatagaatccaaaagacgagtaaatggagtgacctga |
41920783 |
T |
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| Q |
101 |
catgtagaaaacacaatcaagttaacaaagttttacttgcataacaagtttcttgtatttaaagggaaa-ttggcttatgtatttgtacagcatgttaca |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
41920782 |
catgtagaaaacacaatcaagttaacaaagttttacttgcataacaagtttcttgtatttaaagggaaatttggcttatgtatttgtacagcatgttaca |
41920683 |
T |
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| Q |
200 |
cagtagtagttaaaaaaggtatacatttaaatacatattcttcga |
244 |
Q |
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| T |
41920682 |
cagtagtagttgaaaaaggtatacatttaaatacatattattcga |
41920638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 3 - 99
Target Start/End: Original strand, 26829870 - 26829966
Alignment:
| Q |
3 |
actagcctccagtagaccaataacagttgcctttgctctatgcagagacatgacattctcaaatagaatccaaaagacgagtaaatggagtgacctg |
99 |
Q |
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| T |
26829870 |
actagcctctagtagaccaataatcgttgcctttgttcgatgaagagacatggtattctcgaataaaatccaaaagacaagtaaatggaatgacctg |
26829966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 100
Target Start/End: Original strand, 26782981 - 26783078
Alignment:
| Q |
3 |
actagcctccagtagaccaataacagttgcctttgctctatgcagagacatgacattctcaaatagaatccaaaagacgagtaaatggagtgacctga |
100 |
Q |
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||||| ||| |||| |||||||| ||||||||||||| || | ||||||| ||||||||| ||||||||||| || | |||||| | |||||||| |
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| T |
26782981 |
actagtctctagtataccaataattgttgcctttgctcgatttaaagacatggtattctcaaagagaatccaaaatacaactaaatgcaatgacctga |
26783078 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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