View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2637_low_13 (Length: 244)
Name: NF2637_low_13
Description: NF2637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2637_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 14901494 - 14901261
Alignment:
| Q |
1 |
tataagtgattgagtgactttacgaacatccccttttgatgcttccnnnnnnnnnnncaaaccagcttccaaagccttctcgatgaattccataaaccaa |
100 |
Q |
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| T |
14901494 |
tataagtgattgagggactttacgaacatccccttttgactcttcctttgtttttttcaaaccagcttccaaagccttctcgatgaattccataaaccaa |
14901395 |
T |
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| Q |
101 |
ttcccagcttctgtttcaatctgttttcccaacttgactgtgttgcttaagctgcaagatactggtttcttattctcatcattttcaacaattggttcca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
14901394 |
ttcccagcttctgtttcaatctgttttcccaacttgactgtgttgcttaagctgcaagatactggtttcttgttctcatcattttcaacaattggttcca |
14901295 |
T |
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| Q |
201 |
agatagaacctttcttctccaaaatctccctttg |
234 |
Q |
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|| |||||||||||||||||||||||||| |||| |
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| T |
14901294 |
aggtagaacctttcttctccaaaatctccttttg |
14901261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 14908257 - 14908023
Alignment:
| Q |
1 |
tataagtgattgagtgactttacgaacatccccttttgatgcttccnnnnnnnnnnncaaaccagcttccaaagccttctcgatgaattccataaaccaa |
100 |
Q |
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|||||||||||||| |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14908257 |
tataagtgattgagggactttacgaacatccccttttgacgcttcctttgtttttttcaaaccagcttccaaagccttctcgatgaattccataaaccaa |
14908158 |
T |
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| Q |
101 |
ttcccagcttctgtttcaatctgttttcccaacttgact-gtgttgcttaagctgcaagatactggtttcttattctcatcattttcaacaattggttcc |
199 |
Q |
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||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
14908157 |
ttcccagcttctgtttcaatctgttttcccaacttaattggtgttgcttaagctgcaagatactggtttcttattctcatcattttcaacaataggttct |
14908058 |
T |
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| Q |
200 |
aagatagaacctttcttctccaaaatctccctttg |
234 |
Q |
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||||||||| |||||||||| |||||||| |||| |
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| T |
14908057 |
gagatagaacttttcttctccgaaatctccttttg |
14908023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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