View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2637_low_15 (Length: 230)
Name: NF2637_low_15
Description: NF2637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2637_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 153; Significance: 3e-81; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 16 - 211
Target Start/End: Complemental strand, 26814684 - 26814488
Alignment:
| Q |
16 |
cactctggaagaaaataagagaactaaggaagggaagtagttacggaacgaaaaagaaatcgattctcttctttggcactcaaaccactcaggaatcctc |
115 |
Q |
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| T |
26814684 |
cactctggaagaaaataagaaaactaaggaagggaagttgttacggaacgaaaaagaaatcgattctcttctttggtactcaaaccactcaggagtcctc |
26814585 |
T |
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| Q |
116 |
tcatttagtgatgatggaaaacaacactcgatgcttccagcctcatgcaattcctgtaagtttttagcaataagat-aattaaactatatatgttga |
211 |
Q |
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| T |
26814584 |
tcacttggtgatgatggaaaacaacactcgatgctcccagccaaatgcaattcctgtaagtttttagcaataagataaattaaactatatatgttga |
26814488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 23 - 206
Target Start/End: Complemental strand, 27217655 - 27217471
Alignment:
| Q |
23 |
gaagaaaataagagaactaaggaagggaagtagttacggaacgaaaaagaaatcgattctcttctttggcactcaaaccactcaggaatcctctcattta |
122 |
Q |
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||||||||||||| |||||||||||||| || ||||||||||||||||||||| |||| || ||||| |||||||||||| ||||| |||||||||| |
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| T |
27217655 |
gaagaaaataagaaaactaaggaagggaggttgttacggaacgaaaaagaaattgatttgtttgtttggtgctcaaaccactctggaattctctcattta |
27217556 |
T |
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| Q |
123 |
gtgatgatggaaaacaacactcgatgcttccagcctcatgcaattcctgtaagtttttagcaataagat-aattaaactatatat |
206 |
Q |
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| T |
27217555 |
gtattgatggaaaacaacactcgatgcttccagactcatgcagctcctgtaagtttttagcaataagataaattaaactatatat |
27217471 |
T |
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