View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2637_low_16 (Length: 225)
Name: NF2637_low_16
Description: NF2637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2637_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 36151619 - 36151410
Alignment:
| Q |
1 |
atcagcaggtaaatccttgccatcaccatcatcactaccagcaccactaccatcatctgcaactgaagaattcgtttttccagccttaggcaacaaaccc |
100 |
Q |
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| T |
36151619 |
atcagcaggtaaatccttgccatcaccatcatcactaccagcaccactaccatcatctgcaactgaagaattcgtttttccagccttaggcaacaaaccc |
36151520 |
T |
|
| Q |
101 |
ttagctggtgcaggagccagagctggagccttagccggaagaacaagatcaagaggcataagtaccctatcaacttgataaatagcaagtttgctgtcgg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |
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| T |
36151519 |
ttagctggtgcaggagccagagctggagccttagccggaagaacaagatcaagaggcataagtaccttatcaacctgataaatagcaagtttgctgtcgg |
36151420 |
T |
|
| Q |
201 |
tataaacagt |
210 |
Q |
| |
|
|||||||||| |
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| T |
36151419 |
tataaacagt |
36151410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 36155005 - 36154796
Alignment:
| Q |
1 |
atcagcaggtaaatccttgccatcaccatcatcactaccagcaccactaccatcatctgcaactgaagaattcgtttttccagccttaggcaacaaaccc |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36155005 |
atcagcaggtaaatccttaccatcaccatcatcactaccagcaccactaccatcatctgcaactgaagaattcgtttttccagccttaggcaacaaaccc |
36154906 |
T |
|
| Q |
101 |
ttagctggtgcaggagccagagctggagccttagccggaagaacaagatcaagaggcataagtaccctatcaacttgataaatagcaagtttgctgtcgg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |
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| T |
36154905 |
ttagctggtgcaggagccagagctggagccttagccggaagaacaagatcaagaggcataagtaccttatcaacctgataaatagcaagtttgctgtcgg |
36154806 |
T |
|
| Q |
201 |
tataaacagt |
210 |
Q |
| |
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|||||||||| |
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|
| T |
36154805 |
tataaacagt |
36154796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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