View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2637_low_2 (Length: 437)

Name: NF2637_low_2
Description: NF2637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2637_low_2
NF2637_low_2
[»] chr2 (4 HSPs)
chr2 (135-308)||(45401340-45401513)
chr2 (57-107)||(45401539-45401589)
chr2 (309-370)||(45332758-45332821)
chr2 (309-378)||(44324173-44324244)
[»] chr6 (7 HSPs)
chr6 (135-308)||(7599251-7599424)
chr6 (7-64)||(7599504-7599561)
chr6 (309-369)||(28040797-28040859)
chr6 (309-378)||(22014065-22014136)
chr6 (309-370)||(25478293-25478356)
chr6 (309-370)||(27527338-27527401)
chr6 (53-91)||(7599457-7599495)
[»] chr4 (6 HSPs)
chr4 (135-308)||(28463098-28463271)
chr4 (307-419)||(8164432-8164544)
chr4 (7-64)||(28462961-28463018)
chr4 (309-370)||(27561172-27561235)
chr4 (309-370)||(4763526-4763589)
chr4 (53-91)||(28463027-28463065)
[»] chr5 (6 HSPs)
chr5 (132-310)||(3533762-3533941)
chr5 (230-308)||(19610522-19610600)
chr5 (7-64)||(19610746-19610803)
chr5 (7-105)||(3533964-3534065)
chr5 (62-107)||(19610683-19610728)
chr5 (309-378)||(5519500-5519571)
[»] scaffold0014 (1 HSPs)
scaffold0014 (201-308)||(89805-89913)
[»] chr1 (6 HSPs)
chr1 (309-378)||(29289106-29289177)
chr1 (309-370)||(47050549-47050612)
chr1 (309-370)||(14660161-14660224)
chr1 (309-370)||(16100841-16100904)
chr1 (309-370)||(14650370-14650433)
chr1 (309-378)||(17653422-17653493)
[»] chr3 (5 HSPs)
chr3 (309-370)||(19435103-19435166)
chr3 (56-107)||(23361152-23361203)
chr3 (309-370)||(28103912-28103975)
chr3 (309-370)||(6911362-6911425)
chr3 (135-164)||(23361097-23361126)
[»] chr7 (2 HSPs)
chr7 (307-372)||(29467032-29467097)
chr7 (242-306)||(17712889-17712953)
[»] scaffold0406 (1 HSPs)
scaffold0406 (309-370)||(3747-3810)
[»] chr8 (2 HSPs)
chr8 (309-370)||(18982516-18982579)
chr8 (322-378)||(26917366-26917422)


Alignment Details
Target: chr2 (Bit Score: 133; Significance: 5e-69; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 135 - 308
Target Start/End: Complemental strand, 45401513 - 45401340
Alignment:
Q  135 tgagttatcactgaagtgttggtaacatttcccnnnnnnnatttgttcaaacagaaatatagagtaacattttattttatgggtgctcttaaaactgaaa 234  Q
    |||||||||||||||||||||||||||||| ||       ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  45401513 tgagttatcactgaagtgttggtaacatttaccttgttttatttgttcaaaaagaaatatagagtaacattttattttatgggtgctcttaaaactgaaa 45401414  T
Q  235 ataaattatgtgtgcaacacttttttaaaattgtcaccgcaaaaatgttgcaaaatgtcatttgtgcagtagtg 308  Q
    |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  45401413 ataaattatgtgtgtaacacttttttaaaattgtcaccccaaaaatgttgcaaaatgtcatatgtgcagtagtg 45401340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 57 - 107
Target Start/End: Complemental strand, 45401589 - 45401539
Alignment:
Q  57 gtggtgattgattgttgtcgtcgattcattttgatgggtgagatttttggt 107  Q
    |||| |||||||||||||||||||||||||||||| |||||||||||||||    
T  45401589 gtggcgattgattgttgtcgtcgattcattttgatcggtgagatttttggt 45401539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 309 - 370
Target Start/End: Original strand, 45332758 - 45332821
Alignment:
Q  309 gataaaattacaaa--tttgtgaattttcatgatacacttgattgtaaatttattatattttta 370  Q
    ||||||||||||||  ||| |||||||||||| ||||||||||||| |||||||||||||||||    
T  45332758 gataaaattacaaagttttatgaattttcatggtacacttgattgtgaatttattatattttta 45332821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 309 - 378
Target Start/End: Original strand, 44324173 - 44324244
Alignment:
Q  309 gataaaattacaaa--tttgtgaattttcatgatacacttgattgtaaatttattatatttttacacggtta 378  Q
    |||||| |||||||  ||| |||||||||||| ||||||||||||| | ||||||||||||||| |||||||    
T  44324173 gataaatttacaaagttttatgaattttcatggtacacttgattgtgagtttattatatttttatacggtta 44324244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 129; Significance: 1e-66; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 135 - 308
Target Start/End: Complemental strand, 7599424 - 7599251
Alignment:
Q  135 tgagttatcactgaagtgttggtaacatttcccnnnnnnnatttgttcaaacagaaatatagagtaacattttattttatgggtgctcttaaaactgaaa 234  Q
    |||||||||||||||||||||||||||||| ||       ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||    
T  7599424 tgagttatcactgaagtgttggtaacatttacctttttttatttgttcaaaaagaaatatagagtaacattttatttgatgggtgctcttaaaactgaaa 7599325  T
Q  235 ataaattatgtgtgcaacacttttttaaaattgtcaccgcaaaaatgttgcaaaatgtcatttgtgcagtagtg 308  Q
    |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  7599324 ataaattatgtgtgtaacacttttttaaaattgtcaccacaaaaatgttgcaaaatgtcatatgtgcagtagtg 7599251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 7599561 - 7599504
Alignment:
Q  7 gagagaagaaaactgaattctgagaggcgtgacgacgatgatgtgtgacggtggtgat 64  Q
    |||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  7599561 gagaaaagaaaactgaattctgagaggcgtggcgacgatgatgagtgacggtggtgat 7599504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 309 - 369
Target Start/End: Original strand, 28040797 - 28040859
Alignment:
Q  309 gataaaattacaaa--tttgtgaattttcatgatacacttgattgtaaatttattatattttt 369  Q
    ||||||||||||||  ||| |||||||||||| ||||||||||||| ||||||||||||||||    
T  28040797 gataaaattacaaagttttatgaattttcatggtacacttgattgtgaatttattatattttt 28040859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 309 - 378
Target Start/End: Original strand, 22014065 - 22014136
Alignment:
Q  309 gataaaattacaaa--tttgtgaattttcatgatacacttgattgtaaatttattatatttttacacggtta 378  Q
    |||||| |||||||  ||| |||||||||||| ||||||||||||| | ||||||||||||||| |||||||    
T  22014065 gataaatttacaaagttttatgaattttcatggtacacttgattgtgagtttattatatttttatacggtta 22014136  T

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Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 309 - 370
Target Start/End: Complemental strand, 25478356 - 25478293
Alignment:
Q  309 gataaaattacaaa--tttgtgaattttcatgatacacttgattgtaaatttattatattttta 370  Q
    ||||||||||| ||  ||| |||||||||||| ||||||||||||| |||||||||||||||||    
T  25478356 gataaaattacgaagttttatgaattttcatggtacacttgattgtgaatttattatattttta 25478293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 309 - 370
Target Start/End: Original strand, 27527338 - 27527401
Alignment:
Q  309 gataaaattacaaa--tttgtgaattttcatgatacacttgattgtaaatttattatattttta 370  Q
    |||||||||| |||  ||| |||||||||||| ||||||||||||| |||||||||||||||||    
T  27527338 gataaaattagaaagttttatgaattttcatggtacacttgattgtgaatttattatattttta 27527401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 53 - 91
Target Start/End: Complemental strand, 7599495 - 7599457
Alignment:
Q  53 gacggtggtgattgattgttgtcgtcgattcattttgat 91  Q
    |||||||| ||||||||||||| ||||||||||||||||    
T  7599495 gacggtggcgattgattgttgttgtcgattcattttgat 7599457  T

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Target: chr4 (Bit Score: 129; Significance: 1e-66; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 135 - 308
Target Start/End: Original strand, 28463098 - 28463271
Alignment:
Q  135 tgagttatcactgaagtgttggtaacatttcccnnnnnnnatttgttcaaacagaaatatagagtaacattttattttatgggtgctcttaaaactgaaa 234  Q
    |||||||||||||||||||||||||||||| ||       ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||    
T  28463098 tgagttatcactgaagtgttggtaacatttacctttttttatttgttcaaaaagaaatatagagtaacattttatttgatgggtgctcttaaaactgaaa 28463197  T
Q  235 ataaattatgtgtgcaacacttttttaaaattgtcaccgcaaaaatgttgcaaaatgtcatttgtgcagtagtg 308  Q
    |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  28463198 ataaattatgtgtgtaacacttttttaaaattgtcaccacaaaaatgttgcaaaatgtcatatgtgcagtagtg 28463271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 307 - 419
Target Start/End: Complemental strand, 8164544 - 8164432
Alignment:
Q  307 tggataaaattacaaatttgtgaattttcatgatacacttgattgtaaatttattatatttttacacggttaatagaaatagatttaaggtttaattaac 406  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |    
T  8164544 tggataaaattacaaatttgtgaattttcatggtacacttgattgtaaatttattatatttttatacggttaatagaaatagatttaaggtttaattatc 8164445  T
Q  407 aattagtcgttgt 419  Q
    |||||||||||||    
T  8164444 aattagtcgttgt 8164432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 7 - 64
Target Start/End: Original strand, 28462961 - 28463018
Alignment:
Q  7 gagagaagaaaactgaattctgagaggcgtgacgacgatgatgtgtgacggtggtgat 64  Q
    |||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  28462961 gagaaaagaaaactgaattctgagaggcgtggcgacgatgatgagtgacggtggtgat 28463018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 309 - 370
Target Start/End: Complemental strand, 27561235 - 27561172
Alignment:
Q  309 gataaaattacaaa--tttgtgaattttcatgatacacttgattgtaaatttattatattttta 370  Q
    ||||||||||||||  ||| |||||||||||| ||||||||||||| |||||||||||||||||    
T  27561235 gataaaattacaaagttttatgaattttcatggtacacttgattgtgaatttattatattttta 27561172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 309 - 370
Target Start/End: Complemental strand, 4763589 - 4763526
Alignment:
Q  309 gataaaattacaaa--tttgtgaattttcatgatacacttgattgtaaatttattatattttta 370  Q
    ||||||||||| ||  ||| |||||||||||| ||||||||||||  |||||||||||||||||    
T  4763589 gataaaattaccaagttttatgaattttcatggtacacttgattgcgaatttattatattttta 4763526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 53 - 91
Target Start/End: Original strand, 28463027 - 28463065
Alignment:
Q  53 gacggtggtgattgattgttgtcgtcgattcattttgat 91  Q
    |||||||| ||||||||||||| ||||||||||||||||    
T  28463027 gacggtggcgattgattgttgttgtcgattcattttgat 28463065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 127; Significance: 2e-65; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 132 - 310
Target Start/End: Complemental strand, 3533941 - 3533762
Alignment:
Q  132 ttatgagttatc-actgaagtgttggtaacatttcccnnnnnnnatttgttcaaacagaaatatagagtaacattttattttatgggtgctcttaaaact 230  Q
    |||||||||||| ||||||||||||||||||||| ||       ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  3533941 ttatgagttatccactgaagtgttggtaacattttcctttttttatttgttaaaaaagaaatatagagtaacattttattttatgggtgctcttaaaact 3533842  T
Q  231 gaaaataaattatgtgtgcaacacttttttaaaattgtcaccgcaaaaatgttgcaaaatgtcatttgtgcagtagtgga 310  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||    
T  3533841 gaaaataaattatgtgtgtaacacttttttaaaattgtcaccgcaaaaatgttgcaaaatttcatatgtgcagtagtgga 3533762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 230 - 308
Target Start/End: Complemental strand, 19610600 - 19610522
Alignment:
Q  230 tgaaaataaattatgtgtgcaacacttttttaaaattgtcaccgcaaaaatgttgcaaaatgtcatttgtgcagtagtg 308  Q
    ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||    
T  19610600 tgaaaataaattatgtgtgtaacacttttttaaaattatcaccgcaaaaatgttgcaaaatgtcatatgtgcagtagtg 19610522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 19610803 - 19610746
Alignment:
Q  7 gagagaagaaaactgaattctgagaggcgtgacgacgatgatgtgtgacggtggtgat 64  Q
    |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  19610803 gagaaaagaaaactgaattctgagaggcgtgacgacgatgatgcgtgacggtggtgat 19610746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 7 - 105
Target Start/End: Complemental strand, 3534065 - 3533964
Alignment:
Q  7 gagagaagaaaactgaattctgagaggcgtgacgacgatgatgtgt----gacggtggtgattgattgttgtcgtcgattcattttgatgggtgagattt 102  Q
    |||| |||||||||||| |||||||| |||||||  | |||||||     |||||||||||||||||||||| || ||||||||||||| ||||||||||    
T  3534065 gagaaaagaaaactgaactctgagagacgtgacggtggtgatgtggcggcgacggtggtgattgattgttgt-gttgattcattttgatcggtgagattt 3533967  T
Q  103 ttg 105  Q
    |||    
T  3533966 ttg 3533964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 62 - 107
Target Start/End: Complemental strand, 19610728 - 19610683
Alignment:
Q  62 gattgattgttgtcgtcgattcattttgatgggtgagatttttggt 107  Q
    |||||||||||||| ||||||||||||||| |||||||||||||||    
T  19610728 gattgattgttgtcatcgattcattttgatcggtgagatttttggt 19610683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 309 - 378
Target Start/End: Complemental strand, 5519571 - 5519500
Alignment:
Q  309 gataaaattacaaa--tttgtgaattttcatgatacacttgattgtaaatttattatatttttacacggtta 378  Q
    |||||| |||||||  ||| |||||||||||| ||||||||||||| | ||||||||||||||| |||||||    
T  5519571 gataaatttacaaagttttatgaattttcatggtacacttgattgtgagtttattatatttttatacggtta 5519500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 201 - 308
Target Start/End: Complemental strand, 89913 - 89805
Alignment:
Q  201 acattttattttatgggtgctcttaaaa-ctgaaaataaattatgtgtgcaacacttttttaaaattgtcaccgcaaaaatgttgcaaaatgtcatttgt 299  Q
    |||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||| |||||| ||||||||| ||||||||||| |||    
T  89913 acattttattttatgggtgctcttaaaaactgaaaataaattatttgtgtaacacttttttaaaattttcaccgtaaaaatgttacaaaatgtcatatgt 89814  T
Q  300 gcagtagtg 308  Q
    ||| |||||    
T  89813 gcaatagtg 89805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 309 - 378
Target Start/End: Complemental strand, 29289177 - 29289106
Alignment:
Q  309 gataaaattacaaa--tttgtgaattttcatgatacacttgattgtaaatttattatatttttacacggtta 378  Q
    ||||||||||||||  ||| |||||||||||| ||||||||||||| ||||||||||||||||| |||||||    
T  29289177 gataaaattacaaagttttatgaattttcatggtacacttgattgtgaatttattatatttttatacggtta 29289106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 309 - 370
Target Start/End: Complemental strand, 47050612 - 47050549
Alignment:
Q  309 gataaaattacaaa--tttgtgaattttcatgatacacttgattgtaaatttattatattttta 370  Q
    ||||||||||||||  ||| |||||||||||| ||||||||||||| |||||||||||||||||    
T  47050612 gataaaattacaaagttttatgaattttcatggtacacttgattgtgaatttattatattttta 47050549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 309 - 370
Target Start/End: Original strand, 14660161 - 14660224
Alignment:
Q  309 gataaaattacaaa--tttgtgaattttcatgatacacttgattgtaaatttattatattttta 370  Q
    |||||||||| |||  ||| |||||||||||| ||||||||||||| |||||||||||||||||    
T  14660161 gataaaattagaaagttttatgaattttcatggtacacttgattgtgaatttattatattttta 14660224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 309 - 370
Target Start/End: Original strand, 16100841 - 16100904
Alignment:
Q  309 gataaaattacaaa--tttgtgaattttcatgatacacttgattgtaaatttattatattttta 370  Q
    ||||||||||||||  ||| |||||| ||||| ||||||||||||| |||||||||||||||||    
T  16100841 gataaaattacaaagttttatgaattctcatggtacacttgattgtgaatttattatattttta 16100904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 309 - 370
Target Start/End: Original strand, 14650370 - 14650433
Alignment:
Q  309 gataaaattacaaa--tttgtgaattttcatgatacacttgattgtaaatttattatattttta 370  Q
    |||||||||| |||  ||| |||||| ||||| ||||||||||||| |||||||||||||||||    
T  14650370 gataaaattaaaaagttttatgaattatcatggtacacttgattgtgaatttattatattttta 14650433  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 309 - 378
Target Start/End: Complemental strand, 17653493 - 17653422
Alignment:
Q  309 gataaaattacaaa--tttgtgaattttcatgatacacttgattgtaaatttattatatttttacacggtta 378  Q
    |||||| |||||||  ||| |||||||||||| ||||||||||||| |  |||||||||||||| |||||||    
T  17653493 gataaatttacaaagttttatgaattttcatggtacacttgattgtgaggttattatatttttatacggtta 17653422  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 309 - 370
Target Start/End: Original strand, 19435103 - 19435166
Alignment:
Q  309 gataaaattacaaa--tttgtgaattttcatgatacacttgattgtaaatttattatattttta 370  Q
    ||||||||||||||  ||| |||||||||||| ||||||||||||| |||||||||||||||||    
T  19435103 gataaaattacaaagttttatgaattttcatggtacacttgattgtgaatttattatattttta 19435166  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 56 - 107
Target Start/End: Complemental strand, 23361203 - 23361152
Alignment:
Q  56 ggtggtgattgattgttgtcgtcgattcattttgatgggtgagatttttggt 107  Q
    ||||| ||||||| |||||||||||||||||||||| |||||||||||||||    
T  23361203 ggtggcgattgatcgttgtcgtcgattcattttgatcggtgagatttttggt 23361152  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 309 - 370
Target Start/End: Original strand, 28103912 - 28103975
Alignment:
Q  309 gataaaattacaaa--tttgtgaattttcatgatacacttgattgtaaatttattatattttta 370  Q
    ||||||||||||||  ||| |||||||||||| |||||||||| || |||||||||||||||||    
T  28103912 gataaaattacaaagttttatgaattttcatggtacacttgatggtgaatttattatattttta 28103975  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 309 - 370
Target Start/End: Complemental strand, 6911425 - 6911362
Alignment:
Q  309 gataaaattacaaa--tttgtgaattttcatgatacacttgattgtaaatttattatattttta 370  Q
    ||||||||||| ||  ||| |||||||||||| ||||||||||||  |||||||||||||||||    
T  6911425 gataaaattaccaagttttatgaattttcatggtacacttgattgcgaatttattatattttta 6911362  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 164
Target Start/End: Complemental strand, 23361126 - 23361097
Alignment:
Q  135 tgagttatcactgaagtgttggtaacattt 164  Q
    ||||||||||||||||||||||||||||||    
T  23361126 tgagttatcactgaagtgttggtaacattt 23361097  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 307 - 372
Target Start/End: Complemental strand, 29467097 - 29467032
Alignment:
Q  307 tggataaaattacaaatttgtgaattttcatgatacacttgattgtaaatttattatatttttaca 372  Q
    |||||||| ||| |||||| ||||||| |||| |||||||||||||  |||||||| |||||||||    
T  29467097 tggataaatttataaatttatgaatttccatggtacacttgattgttgatttattaaatttttaca 29467032  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 306
Target Start/End: Original strand, 17712889 - 17712953
Alignment:
Q  242 atgtgtgcaacacttttttaaaattgtcaccgcaaaaatgttgcaaaatgtcatttgtgcagtag 306  Q
    ||||||| ||||||||| |  ||||||||||  ||||||||| ||||||||||| ||||||||||    
T  17712889 atgtgtgtaacacttttgttcaattgtcaccaaaaaaatgttacaaaatgtcatgtgtgcagtag 17712953  T

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Target: scaffold0406 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 309 - 370
Target Start/End: Original strand, 3747 - 3810
Alignment:
Q  309 gataaaattacaaa--tttgtgaattttcatgatacacttgattgtaaatttattatattttta 370  Q
    ||||||||||| ||  ||| |||||||||||| |||| |||||||| |||||||||||||||||    
T  3747 gataaaattacgaagttttatgaattttcatggtacatttgattgtgaatttattatattttta 3810  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 309 - 370
Target Start/End: Original strand, 18982516 - 18982579
Alignment:
Q  309 gataaaattacaaa--tttgtgaattttcatgatacacttgattgtaaatttattatattttta 370  Q
    ||||||||||||||  ||| ||||||| |||| ||||||||||||| || ||||||||||||||    
T  18982516 gataaaattacaaagttttatgaatttccatggtacacttgattgtgaacttattatattttta 18982579  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 322 - 378
Target Start/End: Complemental strand, 26917422 - 26917366
Alignment:
Q  322 atttgtgaattttcatgatacacttgattgtaaatttattatatttttacacggtta 378  Q
    |||| |||||||||| | |||||||| |||| | |||||||||||||||||||||||    
T  26917422 atttctgaattttcacggtacacttgtttgtgagtttattatatttttacacggtta 26917366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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