View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2637_low_3 (Length: 417)
Name: NF2637_low_3
Description: NF2637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2637_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 17 - 306
Target Start/End: Complemental strand, 53033266 - 53032977
Alignment:
| Q |
17 |
caataaatgcatcagcttgtcgagccatttcggctttgcgttggtgcatgtccgatacagctcttacttctcccactgtttctccagttatctaaattaa |
116 |
Q |
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| T |
53033266 |
caataaatgcatcagcttgtcgagccatttcggctttgcgttggtgcatgtccgatacagctcttacttctcccactgtttctccagttatctaaattaa |
53033167 |
T |
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| Q |
117 |
ccaactaatcatacttaattaattaattcaactaaaaatacacatttaatcgttgtagtagtattgtaaaatccaaatatatatactagtggtagtgatt |
216 |
Q |
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| T |
53033166 |
ccaactaatcatacttaattaattaattcaactaaaaatacacatttaatcgttgtagtagtattgtataatccaaatatatatactagtggtagtgatt |
53033067 |
T |
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| Q |
217 |
aaagtacgtacctctcttagcataagtgtctttggaatgactctacataagaaaggaggaagaatcatgaacacaaaatctatacatata |
306 |
Q |
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| T |
53033066 |
aaagtacgtacctctcttagcataagtgtctttggaatgactctacataagaaagtaggaagaatcatgagcacaaaatgtatacatata |
53032977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 297 - 411
Target Start/End: Complemental strand, 53032960 - 53032846
Alignment:
| Q |
297 |
tatacatatagatagaagaataaggaattgaagaaaaagaaaggagggtaccctaagacgtggcgtccaccatcatagacaacttgtgagatacgaccca |
396 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53032960 |
tatatatatagatagaagaataaggaattgaagaaaaagaaaggagggtaccctaagacgtggcgtccaccatcatagacaacttgtgagatacgaccca |
53032861 |
T |
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| Q |
397 |
tcaatcctatgcttc |
411 |
Q |
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| T |
53032860 |
tcaatcctatgcttc |
53032846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 7884838 - 7884778
Alignment:
| Q |
17 |
caataaatgcatcagcttgtcgagccatttcggctttgcgttggtgcatgtccgatacagc |
77 |
Q |
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||||||| ||||| || ||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
7884838 |
caataaaagcatcggcctgtcgagccatttcggccttgcgttggtgcatgtccgatacagc |
7884778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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