View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2637_low_4 (Length: 398)
Name: NF2637_low_4
Description: NF2637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2637_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 315; Significance: 1e-177; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 20 - 370
Target Start/End: Complemental strand, 23552179 - 23551829
Alignment:
| Q |
20 |
cagtatgtagttcctctccatcgacatcaacaacagtaaactcaggcccaaaatcacaaaacacggaaccaaaaagacctctaacttcagttttaataaa |
119 |
Q |
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|||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23552179 |
cagtatgtggttcctctccattgacatcaacaacagtaaactcaggcccaaaatcacaaaacacggaaccaaaaagacctctaacttcagttttaataaa |
23552080 |
T |
|
| Q |
120 |
agcaataggaggctgatgactgtggcagtaatcattgaactcaacagctttctcaagaatgacttccgtaaaaacaacagcctataagacagttataata |
219 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
23552079 |
agcaataggaggccgatgactgtggcagtaatcattgaactcaacagctatctcaagactgacttccgtaaaaacaacagcctataagacagttataata |
23551980 |
T |
|
| Q |
220 |
aacaaatttaaatttattcaaataagtcagaaactaatggacacactatacaactccaaagaaggacaagttttaatgaaatggtcaagtaaatccaaac |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||| |
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| T |
23551979 |
aacaaatttaaatttattcaaataagtcagaaactaatggacacactatacaactctaaagaaggacaagttttaatgaaatggtcaaataaattcaaac |
23551880 |
T |
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| Q |
320 |
ttgctcctctcacatgacttcattaattgatctacaatagaatatgttatt |
370 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
23551879 |
ttgctcctctcacatgacttcattaaatgatctacaatagaatatgttatt |
23551829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 20 - 370
Target Start/End: Original strand, 30834421 - 30834772
Alignment:
| Q |
20 |
cagtatgtagttcctctccatcgacatcaacaacagtaaactcaggcccaaaatcacaaaacacggaaccaaaaagacctctaacttcagttttaataaa |
119 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30834421 |
cagtatgtggttcctctccatcgacatcaacaacagtaaactcaggcccaaaatcacaaaacacggaaccaaaaagacctctaacttcagttttaataaa |
30834520 |
T |
|
| Q |
120 |
agcaataggaggctgatgactgtggcagtaatcattgaactcaacagctttctcaagaatgacttccgtaaaaacaacagcctataagacagttataata |
219 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||||||||||| |
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| T |
30834521 |
agcaattggaggctgatgactgtggcagtaatcattgaactcaacagctttctcaagactgacttcggtaaaaacaacagcctacaagacagttataata |
30834620 |
T |
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| Q |
220 |
aacaaatttaaatttattcaaataagtcagaaactaatggacacactatacaactccaaagaaggacaagttttaatgaaatggtcaagtaaatccaaac |
319 |
Q |
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|||| ||||||||||||||||||||||||||||| ||||||| |||||||||||| | |||||| ||||||| || |||||||||||||||||| ||||| |
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| T |
30834621 |
aacatatttaaatttattcaaataagtcagaaacaaatggacgcactatacaactacgaagaagtacaagttctactgaaatggtcaagtaaattcaaac |
30834720 |
T |
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| Q |
320 |
ttgctcctctcacatgacttcattaattgatctacaatagaat-atgttatt |
370 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||| |||||||| |
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| T |
30834721 |
ttgctcctcttacatgacttcattaattgatctacaatagaatgatgttatt |
30834772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 20 - 370
Target Start/End: Original strand, 30815410 - 30815760
Alignment:
| Q |
20 |
cagtatgtagttcctctccatcgacatcaacaacagtaaactcaggcccaaaatcacaaaacacggaaccaaaaagacctctaacttcagttttaataaa |
119 |
Q |
| |
|
|||||||| ||||||| || || ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30815410 |
cagtatgtggttcctccccgtcaacatcaacaactgtaaactcaggtccaaaatcacaaaacacggaaccaaaaagacctctaacttcagttttaataaa |
30815509 |
T |
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| Q |
120 |
agcaataggaggctgatgactgtggcagtaatcattgaactcaacagctttctcaagaatgacttccgtaaaaacaacagcctataagacagttataata |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||||||||||| |
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| T |
30815510 |
agcaataggaggctgatgactgtggcagtaatcattgaactcaacagctttctcaagactgacttcggtaaaaacaacagcctacaagacagttataata |
30815609 |
T |
|
| Q |
220 |
aacaaatttaaatttattcaaataagtcagaaactaatggacacactatacaactccaaagaaggacaagttttaatgaaatggtcaagtaaatccaaac |
319 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |||||||||||| |||||| ||||||||||||||||| ||| |
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| T |
30815610 |
aacaaatttaaatttattcaaataagtcagaaacaaatggacgcactatacaactacaaagaaggacaggttttacagaaatggtcaagtaaat-taaaa |
30815708 |
T |
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| Q |
320 |
ttgctcctctcacatgacttcattaattgatctacaatagaat-atgttatt |
370 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
30815709 |
ttgctcgtctcacatgacttcattaattgatctacaatagaatgatgttatt |
30815760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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