View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2637_low_8 (Length: 280)

Name: NF2637_low_8
Description: NF2637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2637_low_8
NF2637_low_8
[»] chr5 (5 HSPs)
chr5 (21-263)||(41885831-41886073)
chr5 (102-257)||(38605752-38605907)
chr5 (102-226)||(40181271-40181395)
chr5 (102-181)||(40180556-40180635)
chr5 (102-181)||(38605061-38605140)
[»] chr8 (5 HSPs)
chr8 (103-243)||(44459510-44459650)
chr8 (103-243)||(44467043-44467183)
chr8 (111-168)||(44460287-44460344)
chr8 (111-168)||(44467820-44467877)
chr8 (112-171)||(34502333-34502392)
[»] chr1 (1 HSPs)
chr1 (111-168)||(46359157-46359214)
[»] chr6 (2 HSPs)
chr6 (112-171)||(410918-410977)
chr6 (105-172)||(9161362-9161429)


Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 21 - 263
Target Start/End: Complemental strand, 41886073 - 41885831
Alignment:
Q  21 ccaattctcaaggaagcagtaacatcatcttttaacagatagaagcggtttggtggatcatatcatcactacaccttgtactgtaaagtaatatgtatct 120  Q
    ||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  41886073 ccaattcccaaggaagtagtaacatcatcttttaacagatagaagcagtttggtggatcatatcatcactactccttgtactgtaaagtaatatgtatct 41885974  T
Q  121 tgatttggctcacattgaaaagcctcaaatttatgaaaaacatcgagtgcagccttcccttctcgccccataattgagaagaattctattagtttattta 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  41885973 tgatttggctcacattgaaaagcctcaaatttatgaaaaacatcgtgtgcagctttcccttctcgccccataattgagaagaattctattagtttattta 41885874  T
Q  221 gaatccgagcgttaagaaggccggtctgataatggcctgtagt 263  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  41885873 gaatccgagcgttaagaaggccggtctgataatggcctgtagt 41885831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 102 - 257
Target Start/End: Original strand, 38605752 - 38605907
Alignment:
Q  102 tgtaaagtaatatgtatcttgatttggctcacattgaaaagcctcaaatttatgaaaaacatcgagtgcagccttcccttctcgccccataattgagaag 201  Q
    ||||||||||||||| |||||||||||| ||||||||||  |||||||  |||||||||| || ||||||| ||| |||||||| || ||||||||||||    
T  38605752 tgtaaagtaatatgtgtcttgatttggcacacattgaaagacctcaaacatatgaaaaacttcaagtgcagacttgccttctcgacctataattgagaag 38605851  T
Q  202 aattctattagtttatttagaatccgagcgttaagaaggccggtctgataatggcc 257  Q
    |||| ||| || | ||| |||||  | | ||||||||||||||| |||||||||||    
T  38605852 aattgtatgaggtgattgagaatgggtgggttaagaaggccggtttgataatggcc 38605907  T

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Target: chr5; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 102 - 226
Target Start/End: Original strand, 40181271 - 40181395
Alignment:
Q  102 tgtaaagtaatatgtatcttgatttggctcacattgaaaagcctcaaatttatgaaaaacatcgagtgcagccttcccttctcgccccataattgagaag 201  Q
    |||| ||||||||||||||||||||||| ||||||||||  | ||||| |||||||||||||| ||||| ||||| ||||   ||||||||| |||||||    
T  40181271 tgtatagtaatatgtatcttgatttggcacacattgaaatacgtcaaaattatgaaaaacatcaagtgctgcctttccttgctgccccataactgagaag 40181370  T
Q  202 aattctattagtttatttagaatcc 226  Q
     ||||||| |||||||| |||||||    
T  40181371 gattctatgagtttattgagaatcc 40181395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 102 - 181
Target Start/End: Original strand, 40180556 - 40180635
Alignment:
Q  102 tgtaaagtaatatgtatcttgatttggctcacattgaaaagcctcaaatttatgaaaaacatcgagtgcagccttccctt 181  Q
    |||||||  ||||||||||||||||||| ||||||||||  |||||||||||||||||||||| ||||||||||||||||    
T  40180556 tgtaaagatatatgtatcttgatttggcacacattgaaagacctcaaatttatgaaaaacatcaagtgcagccttccctt 40180635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 102 - 181
Target Start/End: Original strand, 38605061 - 38605140
Alignment:
Q  102 tgtaaagtaatatgtatcttgatttggctcacattgaaaagcctcaaatttatgaaaaacatcgagtgcagccttccctt 181  Q
    |||||||  ||||| ||||||||| ||| |||| |||||  ||||||||||||||||||| | |||||||| ||| ||||    
T  38605061 tgtaaagatatatgaatcttgattaggcacacactgaaagacctcaaatttatgaaaaacttggagtgcagtcttacctt 38605140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 7e-24; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 103 - 243
Target Start/End: Complemental strand, 44459650 - 44459510
Alignment:
Q  103 gtaaagtaatatgtatcttgatttggctcacattgaaaagcctcaaatttatgaaaaacatcgagtgcagccttcccttctcgccccataattgagaaga 202  Q
    ||||||||||||||||| ||||||||| |||| ||||| ||||||||  |||||||||| || |||||||  || ||||||||||||||||||||||||     
T  44459650 gtaaagtaatatgtatcgtgatttggcacacactgaaaggcctcaaacatatgaaaaacttcaagtgcagatttaccttctcgccccataattgagaagg 44459551  T
Q  203 attctattagtttatttagaatccgagcgttaagaaggccg 243  Q
    ||| ||| |||  ||| ||||| || || ||||||| ||||    
T  44459550 attgtatgagtgaattgagaatacgggcattaagaacgccg 44459510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 103 - 243
Target Start/End: Complemental strand, 44467183 - 44467043
Alignment:
Q  103 gtaaagtaatatgtatcttgatttggctcacattgaaaagcctcaaatttatgaaaaacatcgagtgcagccttcccttctcgccccataattgagaaga 202  Q
    ||||||||||||||||| ||||||||| |||| ||||| ||||||||  |||||||||| || |||||||  || ||||||||||||||||||||||||     
T  44467183 gtaaagtaatatgtatcgtgatttggcacacactgaaaggcctcaaacatatgaaaaacttcaagtgcagatttaccttctcgccccataattgagaagg 44467084  T
Q  203 attctattagtttatttagaatccgagcgttaagaaggccg 243  Q
    ||| ||| |||  ||| ||||| || || ||||||| ||||    
T  44467083 attgtatgagtgaattgagaatacgggcattaagaacgccg 44467043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 111 - 168
Target Start/End: Complemental strand, 44460344 - 44460287
Alignment:
Q  111 atatgtatcttgatttggctcacattgaaaagcctcaaatttatgaaaaacatcgagt 168  Q
    ||||||||||||||| ||| | |||||||| |||||||||||||||||||| ||||||    
T  44460344 atatgtatcttgattcggcacgcattgaaatgcctcaaatttatgaaaaacttcgagt 44460287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 111 - 168
Target Start/End: Complemental strand, 44467877 - 44467820
Alignment:
Q  111 atatgtatcttgatttggctcacattgaaaagcctcaaatttatgaaaaacatcgagt 168  Q
    ||||||||||||||| ||| | |||||||| |||||||||||||||||||| ||||||    
T  44467877 atatgtatcttgattcggcacgcattgaaatgcctcaaatttatgaaaaacttcgagt 44467820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 112 - 171
Target Start/End: Original strand, 34502333 - 34502392
Alignment:
Q  112 tatgtatcttgatttggctcacattgaaaagcctcaaatttatgaaaaacatcgagtgca 171  Q
    ||||||||| |||| ||| |||||||||| |||||||||||||||||||| ||| |||||    
T  34502333 tatgtatctcgattcggcacacattgaaatgcctcaaatttatgaaaaacttcgggtgca 34502392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 111 - 168
Target Start/End: Complemental strand, 46359214 - 46359157
Alignment:
Q  111 atatgtatcttgatttggctcacattgaaaagcctcaaatttatgaaaaacatcgagt 168  Q
    ||||||||||||||| ||| | |||||||| |||||||||||||||||||| ||||||    
T  46359214 atatgtatcttgattcggcacgcattgaaatgcctcaaatttatgaaaaacttcgagt 46359157  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 112 - 171
Target Start/End: Complemental strand, 410977 - 410918
Alignment:
Q  112 tatgtatcttgatttggctcacattgaaaagcctcaaatttatgaaaaacatcgagtgca 171  Q
    |||||||||||||||||  ||||||||||  ||||||||||||||||||| || ||||||    
T  410977 tatgtatcttgatttggaacacattgaaatacctcaaatttatgaaaaacttcaagtgca 410918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 105 - 172
Target Start/End: Complemental strand, 9161429 - 9161362
Alignment:
Q  105 aaagtaatatgtatcttgatttggctcacattgaaaagcctcaaatttatgaaaaacatcgagtgcag 172  Q
    |||||||||||| |||||||| ||  ||||||||||  ||||||||| ||||||||| || |||||||    
T  9161429 aaagtaatatgtctcttgattcggaacacattgaaagacctcaaattaatgaaaaacttcaagtgcag 9161362  T

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