View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2638_high_18 (Length: 232)
Name: NF2638_high_18
Description: NF2638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2638_high_18 |
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| [»] scaffold0638 (1 HSPs) |
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| [»] scaffold0451 (1 HSPs) |
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Alignment Details
Target: scaffold0638 (Bit Score: 159; Significance: 8e-85; HSPs: 1)
Name: scaffold0638
Description:
Target: scaffold0638; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 18 - 215
Target Start/End: Original strand, 4822 - 5017
Alignment:
| Q |
18 |
aacatgcgcaagatgtgcacgttagaattgttgagccattcaaaaatcaacagttttagaagcatgagagaacaagagcttgacctattcatcaagttta |
117 |
Q |
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| T |
4822 |
aacatgcacaagatgtgcacgttagaattgttgagccattcaaaaatcaatagttttagaagcatgaggaaac--gagcttgacctattgatcaagttta |
4919 |
T |
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| Q |
118 |
tgaaagaagcagccaatgatggaacaatggttgatataactgccaaggtttctacactcactgctgatatgacttgtagaatggtttttgggaagaat |
215 |
Q |
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| T |
4920 |
tgaaagaagcagccaatgatggaacaacggttgatataagtgccaaggtttctacactcactgctgatatgacttgtagaatggtttttgggaagaat |
5017 |
T |
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Target: chr2 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 18 - 211
Target Start/End: Original strand, 27412023 - 27412216
Alignment:
| Q |
18 |
aacatgcgcaagatgtgcacgttagaattgttgagccattcaaaaatcaacagttttagaagcatgagagaacaagagcttgacctattcatcaagttta |
117 |
Q |
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|||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||| |
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| T |
27412023 |
aacatgcgcaagatgtgcacattagaattgttgagccatacaaaaatcaacagttttagaagtatgagggaacaagagcttgacctattgatcaagttta |
27412122 |
T |
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| Q |
118 |
tgaaagaagcagccaatgatggaacaatggttgatataactgccaaggtttctacactcactgctgatatgacttgtagaatggtttttgggaa |
211 |
Q |
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| T |
27412123 |
taagagaagcagccaatgatggaacaacggttgatataagtgccaaggttgctgcacttacagctgatatgacttgcataatagtttttgggaa |
27412216 |
T |
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Target: scaffold0451 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: scaffold0451
Description:
Target: scaffold0451; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 18 - 211
Target Start/End: Complemental strand, 8659 - 8466
Alignment:
| Q |
18 |
aacatgcgcaagatgtgcacgttagaattgttgagccattcaaaaatcaacagttttagaagcatgagagaacaagagcttgacctattcatcaagttta |
117 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||| |
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| T |
8659 |
aacatgcgcaagatgtgcacattagaattgttgagccattcaaaaatcaacagttttagaattatgagggaacaagagcttgacctattgatcaagttta |
8560 |
T |
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| Q |
118 |
tgaaagaagcagccaatgatggaacaatggttgatataactgccaaggtttctacactcactgctgatatgacttgtagaatggtttttgggaa |
211 |
Q |
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| T |
8559 |
taagagaagcagccaatgatggaacaacggttgatataagtgccaaggttgctgcacttacagttgatatgacttgcataatagtttttgggaa |
8466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 30 - 211
Target Start/End: Original strand, 38258245 - 38258426
Alignment:
| Q |
30 |
atgtgcacgttagaattgttgagccattcaaaaatcaacagttttagaagcatgagagaacaagagcttgacctattcatcaagtttatgaaagaagcag |
129 |
Q |
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|||||||| |||||||||||||||||| ||||||| || |||| || |||||| |||||||| ||||||||||| || |||||| | | |||| |
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| T |
38258245 |
atgtgcactttagaattgttgagccatgcaaaaataaattcatttaaaaccatgagggaacaagaacttgacctattgataaagtttttaagagaaaaga |
38258344 |
T |
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| Q |
130 |
ccaatgatggaacaatggttgatataactgccaaggtttctacactcactgctgatatgacttgtagaatggtttttgggaa |
211 |
Q |
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|||||||| |||||| ||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||| ||||| |
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| T |
38258345 |
ccaatgatagaacaaaggttgatttaagcaccaaggtttctacactcactgctgatatgagttgtagaatggttttggggaa |
38258426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 30 - 211
Target Start/End: Original strand, 38262001 - 38262176
Alignment:
| Q |
30 |
atgtgcacgttagaattgttgagccattcaaaaatcaacagttttagaagcatgagagaacaagagcttgacctattcatcaagtttatgaaagaagcag |
129 |
Q |
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|||||||| |||||||||||||||||| ||||||| || |||| || |||||| |||||||| ||||||||||| || | |||| | |||| |
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| T |
38262001 |
atgtgcactttagaattgttgagccatgcaaaaataaattcatttaaaaccatgagggaacaagaacttgacctattgataatgtttctaaaag------ |
38262094 |
T |
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| Q |
130 |
ccaatgatggaacaatggttgatataactgccaaggtttctacactcactgctgatatgacttgtagaatggtttttgggaa |
211 |
Q |
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| T |
38262095 |
ctaatgacggaacaaaggttgatttaagtgctaaagtttctacactcgcggctgatatgagttgtagaatggttttagggaa |
38262176 |
T |
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