View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2638_high_2 (Length: 419)
Name: NF2638_high_2
Description: NF2638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2638_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 123; Significance: 5e-63; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 106 - 298
Target Start/End: Complemental strand, 5680095 - 5679903
Alignment:
| Q |
106 |
tatatatgaaaaaattagatgagttggattttggaat----cagagaaaacttcgaaacctagagagtacttgaagagaaatgctcatatattacacacc |
201 |
Q |
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| T |
5680095 |
tatataagaaaaaattagatgagttggattttgaaatacatcagagaaaactttgaaacctagagagtacttgaagagaaatactcatatattacatacc |
5679996 |
T |
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| Q |
202 |
aattaggtcattaattatatcggcagtaggattcaaactctaattctagttgtatttaagctgaatccttaaaaactagaccaatctatgttggtta |
298 |
Q |
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| T |
5679995 |
aattaggtcatta----tatcggtagtagagttcaaactctaattctagtcgtatttaagctgaatccttaaaaattagaccaatctatgttggtta |
5679903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 106 - 298
Target Start/End: Complemental strand, 5705147 - 5704955
Alignment:
| Q |
106 |
tatatatgaaaaaattagatgagttggattttggaat----cagagaaaacttcgaaacctagagagtacttgaagagaaatgctcatatattacacacc |
201 |
Q |
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| T |
5705147 |
tatataagaaaaaattagatgagttggattttgaaatacatcagagaaaactttgaaacctagagagtacttgaagagaaatactcatatattacatacc |
5705048 |
T |
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| Q |
202 |
aattaggtcattaattatatcggcagtaggattcaaactctaattctagttgtatttaagctgaatccttaaaaactagaccaatctatgttggtta |
298 |
Q |
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| T |
5705047 |
aattaggtcatta----tatcggtagtagagttcaaactctaattctagtcgtatttaagctgaatccttaaaaattagaccaatctatgttggtta |
5704955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 345 - 414
Target Start/End: Complemental strand, 5679855 - 5679786
Alignment:
| Q |
345 |
ggtgtcactgcaatcagctcaccaaattattcaaattctagtgcctctttgaccataatttcttctcact |
414 |
Q |
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| T |
5679855 |
ggtgtcactgcaatcagctcaccaaattattcaaattctagtgcctctttgaccataatttcttgtcact |
5679786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 345 - 414
Target Start/End: Complemental strand, 5704907 - 5704838
Alignment:
| Q |
345 |
ggtgtcactgcaatcagctcaccaaattattcaaattctagtgcctctttgaccataatttcttctcact |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
5704907 |
ggtgtcactgcaatcagctcaccaaattattcaaattctagtgcctctttgaccataatttcttgtcact |
5704838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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