View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2638_high_6 (Length: 351)
Name: NF2638_high_6
Description: NF2638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2638_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 3 - 335
Target Start/End: Complemental strand, 3639652 - 3639331
Alignment:
| Q |
3 |
caacaaatatacttctcaaaattcacatgacacggccccgtccaagtaattttttatgataagtcgttaataattcaagtaaggaattactagcttatac |
102 |
Q |
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| T |
3639652 |
caacaaatatacttctcaaaattcacatgacacggccccgtccaagtaattttttatgataagtcgttaataattcaagtaaggaattactagcttatac |
3639553 |
T |
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| Q |
103 |
acacacattaaaggtgttactactttaaagttgggacatatacatattaattttcacgtctgagctggtataatgggctgcttgcctatatgggtcctcc |
202 |
Q |
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| T |
3639552 |
acacacattaaaggtgttactactttaaagttgggacatatacatattaattttcacgtctgagctggtataatgggctgcttgcctatatgggtcctcc |
3639453 |
T |
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| Q |
203 |
cttattggcacatagcatgcacatgctcatgactccctgaatccgaaattcactcctacattatgcaatccttggaataacctgaccctctcaaggtatt |
302 |
Q |
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| T |
3639452 |
cttattggc-----------acatgctcatgactccctgaatccgaaattcactcctacattatggaatccttggaataacctgaccctctcaaggtatt |
3639364 |
T |
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| Q |
303 |
gatcatgatttttcatattttattttcataatc |
335 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
3639363 |
gatcatgatttttcatattttattttcataatc |
3639331 |
T |
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