View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2638_high_7 (Length: 326)

Name: NF2638_high_7
Description: NF2638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2638_high_7
NF2638_high_7
[»] scaffold0168 (3 HSPs)
scaffold0168 (9-322)||(20827-21140)
scaffold0168 (253-322)||(21200-21269)
scaffold0168 (253-319)||(21329-21395)
[»] chr6 (41 HSPs)
chr6 (182-294)||(16766654-16766766)
chr6 (182-288)||(9027135-9027241)
chr6 (188-280)||(5732514-5732606)
chr6 (190-291)||(8365512-8365613)
chr6 (189-294)||(34073337-34073442)
chr6 (182-297)||(18367794-18367908)
chr6 (182-280)||(7938073-7938171)
chr6 (188-294)||(9107360-9107466)
chr6 (211-322)||(7723208-7723323)
chr6 (198-280)||(9658852-9658934)
chr6 (237-298)||(8931588-8931649)
chr6 (203-280)||(19044442-19044519)
chr6 (188-256)||(426542-426610)
chr6 (182-294)||(10294064-10294176)
chr6 (205-280)||(7996382-7996457)
chr6 (205-280)||(8022344-8022419)
chr6 (233-288)||(9025490-9025545)
chr6 (210-280)||(7265597-7265667)
chr6 (212-294)||(26562676-26562758)
chr6 (188-297)||(5000613-5000722)
chr6 (217-270)||(32839660-32839713)
chr6 (264-322)||(34384935-34384995)
chr6 (188-248)||(6389706-6389766)
chr6 (188-280)||(7977834-7977926)
chr6 (200-288)||(10770670-10770758)
chr6 (200-294)||(10339115-10339210)
chr6 (202-277)||(17341671-17341746)
chr6 (214-277)||(19040341-19040404)
chr6 (189-280)||(34595098-34595189)
chr6 (233-291)||(6665221-6665279)
chr6 (200-290)||(12696299-12696389)
chr6 (200-270)||(31579239-31579309)
chr6 (233-294)||(9195744-9195805)
chr6 (233-294)||(9617442-9617503)
chr6 (201-278)||(13851712-13851789)
chr6 (231-300)||(21142124-21142193)
chr6 (187-243)||(6898322-6898378)
chr6 (196-280)||(7086766-7086850)
chr6 (200-280)||(9629358-9629438)
chr6 (183-279)||(30866149-30866245)
chr6 (213-289)||(32320664-32320740)
[»] scaffold0008 (1 HSPs)
scaffold0008 (174-297)||(263359-263482)
[»] chr5 (37 HSPs)
chr5 (201-322)||(22423773-22423895)
chr5 (209-294)||(3966487-3966572)
chr5 (182-280)||(21191060-21191158)
chr5 (182-318)||(13287366-13287501)
chr5 (179-297)||(19552532-19552648)
chr5 (225-295)||(7175008-7175078)
chr5 (223-287)||(6471886-6471950)
chr5 (182-294)||(21522707-21522819)
chr5 (182-294)||(21533273-21533385)
chr5 (182-294)||(21541987-21542099)
chr5 (210-294)||(39698526-39698610)
chr5 (233-319)||(36838551-36838638)
chr5 (188-294)||(18592036-18592142)
chr5 (233-293)||(3751921-3751981)
chr5 (188-280)||(16203799-16203891)
chr5 (200-256)||(26716119-26716175)
chr5 (200-256)||(26985859-26985915)
chr5 (211-294)||(11685925-11686007)
chr5 (211-294)||(19429418-19429501)
chr5 (211-318)||(2436908-2437017)
chr5 (182-248)||(15382434-15382500)
chr5 (190-248)||(19820430-19820488)
chr5 (211-297)||(25817481-25817567)
chr5 (190-280)||(26312734-26312824)
chr5 (182-248)||(27112577-27112643)
chr5 (193-243)||(36642803-36642853)
chr5 (188-294)||(37328834-37328940)
chr5 (211-303)||(6035469-6035560)
chr5 (192-248)||(15410484-15410540)
chr5 (188-256)||(17123011-17123079)
chr5 (182-294)||(19579658-19579770)
chr5 (190-242)||(22013379-22013431)
chr5 (223-275)||(24273039-24273091)
chr5 (223-275)||(24389123-24389175)
chr5 (216-280)||(28588678-28588742)
chr5 (210-294)||(30098311-30098395)
chr5 (188-248)||(42469184-42469244)
[»] chr1 (34 HSPs)
chr1 (190-296)||(10572577-10572683)
chr1 (192-280)||(9709787-9709875)
chr1 (182-290)||(1486703-1486811)
chr1 (188-287)||(15323126-15323225)
chr1 (235-322)||(44482240-44482332)
chr1 (182-277)||(398772-398867)
chr1 (172-294)||(6612161-6612283)
chr1 (182-272)||(28674757-28674847)
chr1 (200-294)||(34315687-34315781)
chr1 (192-288)||(7918207-7918303)
chr1 (225-280)||(1864884-1864939)
chr1 (235-294)||(25361896-25361955)
chr1 (205-280)||(36878441-36878516)
chr1 (184-254)||(15641060-15641130)
chr1 (223-301)||(34371712-34371789)
chr1 (190-280)||(39130771-39130861)
chr1 (182-292)||(40285646-40285756)
chr1 (188-294)||(47989461-47989566)
chr1 (211-280)||(21530675-21530744)
chr1 (182-291)||(38503277-38503386)
chr1 (200-288)||(6427325-6427413)
chr1 (233-297)||(9828052-9828116)
chr1 (282-322)||(48547947-48547987)
chr1 (189-256)||(2896149-2896216)
chr1 (193-288)||(20157346-20157441)
chr1 (188-271)||(34298399-34298482)
chr1 (190-248)||(5927376-5927434)
chr1 (264-294)||(25934655-25934685)
chr1 (187-253)||(40917713-40917779)
chr1 (182-279)||(10577740-10577837)
chr1 (211-280)||(13997869-13997938)
chr1 (190-243)||(48040503-48040556)
chr1 (188-256)||(9103603-9103671)
chr1 (188-248)||(13011252-13011312)
[»] chr7 (32 HSPs)
chr7 (189-290)||(1433418-1433519)
chr7 (188-297)||(26329369-26329478)
chr7 (189-297)||(19206014-19206122)
chr7 (190-294)||(24339607-24339711)
chr7 (206-293)||(32308101-32308188)
chr7 (182-289)||(22602705-22602812)
chr7 (193-280)||(26733272-26733359)
chr7 (188-290)||(5409830-5409932)
chr7 (190-288)||(27945006-27945104)
chr7 (190-295)||(7438671-7438776)
chr7 (189-278)||(43249957-43250046)
chr7 (192-280)||(21826240-21826328)
chr7 (200-291)||(15902797-15902888)
chr7 (189-243)||(13585271-13585325)
chr7 (233-297)||(26033448-26033512)
chr7 (233-280)||(3721101-3721148)
chr7 (223-294)||(8160414-8160485)
chr7 (189-256)||(11722126-11722193)
chr7 (233-280)||(23849462-23849509)
chr7 (172-294)||(30730984-30731104)
chr7 (232-287)||(35297669-35297724)
chr7 (233-318)||(7328652-7328742)
chr7 (182-280)||(11061080-11061178)
chr7 (198-288)||(18013070-18013160)
chr7 (172-218)||(18213100-18213146)
chr7 (200-249)||(4017829-4017878)
chr7 (233-290)||(16341504-16341561)
chr7 (211-280)||(22484011-22484080)
chr7 (233-294)||(23128651-23128712)
chr7 (188-269)||(25481865-25481946)
chr7 (212-280)||(20549778-20549846)
chr7 (211-283)||(22868028-22868100)
[»] chr8 (24 HSPs)
chr8 (182-294)||(22651933-22652045)
chr8 (182-277)||(24413566-24413662)
chr8 (192-294)||(29510294-29510396)
chr8 (190-280)||(33405388-33405478)
chr8 (190-295)||(11927075-11927180)
chr8 (190-287)||(11944630-11944727)
chr8 (182-297)||(28384981-28385096)
chr8 (172-294)||(24362192-24362314)
chr8 (188-278)||(44067479-44067569)
chr8 (188-293)||(11803222-11803327)
chr8 (182-270)||(37283824-37283912)
chr8 (223-319)||(25566839-25566937)
chr8 (182-248)||(926824-926890)
chr8 (192-294)||(13436954-13437056)
chr8 (211-280)||(4786342-4786411)
chr8 (200-280)||(24669408-24669488)
chr8 (184-280)||(25192351-25192447)
chr8 (177-220)||(18964123-18964166)
chr8 (190-269)||(31556962-31557040)
chr8 (211-280)||(13844600-13844669)
chr8 (233-278)||(34897093-34897138)
chr8 (210-294)||(15816119-15816203)
chr8 (202-274)||(29776013-29776085)
chr8 (205-277)||(31109525-31109597)
[»] scaffold0123 (1 HSPs)
scaffold0123 (217-293)||(44516-44592)
[»] chr4 (22 HSPs)
chr4 (172-280)||(23292990-23293098)
chr4 (182-291)||(19482625-19482734)
chr4 (189-248)||(16402247-16402306)
chr4 (188-278)||(24343470-24343560)
chr4 (198-275)||(22440609-22440686)
chr4 (182-297)||(30982865-30982977)
chr4 (210-293)||(903907-903990)
chr4 (200-318)||(14126076-14126195)
chr4 (233-320)||(21658778-21658865)
chr4 (182-256)||(20521877-20521951)
chr4 (182-256)||(27706205-27706279)
chr4 (233-290)||(15659754-15659811)
chr4 (188-276)||(36635287-36635375)
chr4 (182-249)||(20633442-20633509)
chr4 (189-280)||(21945467-21945558)
chr4 (200-294)||(35723374-35723468)
chr4 (234-280)||(9996849-9996895)
chr4 (235-289)||(18576032-18576086)
chr4 (203-297)||(40742569-40742663)
chr4 (232-289)||(5775353-5775410)
chr4 (172-280)||(12895278-12895386)
chr4 (187-219)||(13483995-13484027)
[»] scaffold0223 (1 HSPs)
scaffold0223 (190-316)||(20137-20261)
[»] chr3 (31 HSPs)
chr3 (188-278)||(24205047-24205137)
chr3 (172-297)||(28678250-28678375)
chr3 (211-322)||(15544679-15544794)
chr3 (188-294)||(15796284-15796390)
chr3 (182-280)||(25093459-25093557)
chr3 (190-275)||(14618746-14618831)
chr3 (205-290)||(25948881-25948966)
chr3 (188-280)||(8383220-8383312)
chr3 (225-297)||(16192737-16192809)
chr3 (211-294)||(26290357-26290440)
chr3 (202-277)||(32804547-32804622)
chr3 (182-256)||(10268514-10268588)
chr3 (172-297)||(4990954-4991079)
chr3 (233-294)||(8039825-8039886)
chr3 (200-297)||(9800015-9800112)
chr3 (182-243)||(10335327-10335388)
chr3 (187-248)||(25652067-25652128)
chr3 (189-286)||(28917965-28918062)
chr3 (182-278)||(35994744-35994839)
chr3 (225-280)||(7614419-7614474)
chr3 (225-280)||(8789554-8789609)
chr3 (224-286)||(21256984-21257046)
chr3 (189-291)||(41961643-41961745)
chr3 (217-290)||(49651780-49651853)
chr3 (188-248)||(2684350-2684410)
chr3 (188-248)||(12674537-12674597)
chr3 (261-293)||(13806272-13806304)
chr3 (233-297)||(23184059-23184123)
chr3 (194-262)||(24633736-24633803)
chr3 (182-278)||(34307786-34307882)
chr3 (188-280)||(38731181-38731273)
[»] scaffold0122 (1 HSPs)
scaffold0122 (188-297)||(8629-8738)
[»] chr2 (29 HSPs)
chr2 (184-248)||(23354688-23354752)
chr2 (172-291)||(34784975-34785094)
chr2 (182-276)||(21616719-21616813)
chr2 (188-280)||(18276484-18276576)
chr2 (200-279)||(30404855-30404934)
chr2 (226-289)||(30527590-30527653)
chr2 (211-274)||(32199150-32199213)
chr2 (198-280)||(20242731-20242813)
chr2 (188-270)||(28412313-28412395)
chr2 (240-294)||(35056883-35056937)
chr2 (223-293)||(44860318-44860388)
chr2 (233-277)||(17776595-17776639)
chr2 (200-280)||(23718001-23718081)
chr2 (200-280)||(24105673-24105753)
chr2 (186-281)||(30470999-30471094)
chr2 (215-278)||(37411250-37411313)
chr2 (190-248)||(23355031-23355089)
chr2 (284-322)||(34691778-34691816)
chr2 (284-322)||(34714190-34714228)
chr2 (212-277)||(35449500-35449565)
chr2 (198-294)||(11223853-11223949)
chr2 (188-248)||(15972836-15972896)
chr2 (172-216)||(18631467-18631511)
chr2 (200-248)||(18841049-18841097)
chr2 (284-320)||(19536372-19536408)
chr2 (192-280)||(31018557-31018645)
chr2 (172-256)||(31283995-31284079)
chr2 (250-290)||(41843466-41843506)
chr2 (190-295)||(41942070-41942177)
[»] scaffold0021 (1 HSPs)
scaffold0021 (182-280)||(130439-130537)
[»] scaffold0003 (1 HSPs)
scaffold0003 (189-294)||(241558-241663)
[»] scaffold0036 (1 HSPs)
scaffold0036 (233-297)||(9734-9798)
[»] scaffold0007 (1 HSPs)
scaffold0007 (188-248)||(225304-225364)
[»] scaffold0136 (1 HSPs)
scaffold0136 (188-294)||(3839-3950)
[»] scaffold0027 (1 HSPs)
scaffold0027 (182-269)||(46639-46726)
[»] scaffold0020 (1 HSPs)
scaffold0020 (233-288)||(135308-135363)
[»] scaffold0018 (1 HSPs)
scaffold0018 (198-269)||(192264-192335)
[»] scaffold0053 (1 HSPs)
scaffold0053 (182-248)||(8755-8821)
[»] scaffold0697 (1 HSPs)
scaffold0697 (211-280)||(1630-1699)
[»] scaffold0116 (1 HSPs)
scaffold0116 (182-291)||(9855-9964)
[»] scaffold0044 (1 HSPs)
scaffold0044 (234-294)||(53189-53249)
[»] scaffold0450 (1 HSPs)
scaffold0450 (212-291)||(8628-8707)
[»] scaffold0236 (1 HSPs)
scaffold0236 (224-287)||(25765-25828)
[»] scaffold0227 (1 HSPs)
scaffold0227 (188-220)||(15018-15050)


Alignment Details
Target: scaffold0168 (Bit Score: 261; Significance: 1e-145; HSPs: 3)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 9 - 322
Target Start/End: Original strand, 20827 - 21140
Alignment:
Q  9 gaagaatatagaaaatagatcacccttttcagaaactggatcttactccttacactctgactctgacagtgttaataatatagacagtgagacaggtaat 108  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20827 gaagaagatagaaaatagatcacccttttcagaaactggatcttactccttacactctgactctgacagtgttaataatatagacagtgagacaggtaat 20926  T
Q  109 caactaaatatgtcttcacttagnnnnnnngaatacaaactattcattgtttgttgtgtactgtgaaacacatatacgaacacggacaccagacacgaca 208  Q
     ||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  20927 taactaaatatgtcttcacttagtttttttgaatacaaactattcattgtttgttgtgtactgtgaaacacagatacgaacacggacaccagacacgaca 21026  T
Q  209 tggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggtatcgtgtcggtgtcagatacgcctaatc 308  Q
     ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  21027 cggacactgacatgctgacacggttaataatttgagaaaatcacataagtcggtataattatatgtgtcggtatcgtgtcggtgtcagacacgcctaatc 21126  T
Q  309 cgaggagtgtccgt 322  Q
    |||| ||| |||||    
T  21127 cgagaagtatccgt 21140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 253 - 322
Target Start/End: Original strand, 21200 - 21269
Alignment:
Q  253 ataagtcggtataattatatgtgtcggtatcgtgtcggtgtcagatacgcctaatccgaggagtgtccgt 322  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||    
T  21200 ataagtcggtataattatatgtgtcggtatcgtgtcggtgtcagacacgcctaatccgaggagtatccgt 21269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 253 - 319
Target Start/End: Original strand, 21329 - 21395
Alignment:
Q  253 ataagtcggtataattatatgtgtcggtatcgtgtcggtgtcagatacgcctaatccgaggagtgtc 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||    
T  21329 ataagtcggtataattatatgtgtcggtatcgtgtcggtgtcagacacgcctaatccgagaagtgtc 21395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 9e-24; HSPs: 41)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 182 - 294
Target Start/End: Original strand, 16766654 - 16766766
Alignment:
Q  182 atacgaacacggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggta 281  Q
    ||||| ||||||||||| ||||||||||||||||||||| || ||||| | ||||||||||| |||| ||||||| || || |||||| | ||||||||     
T  16766654 atacggacacggacaccggacacgacatggacactgacacgccgacacagctaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtg 16766753  T
Q  282 tcgtgtcggtgtc 294  Q
    |||||||||||||    
T  16766754 tcgtgtcggtgtc 16766766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 182 - 288
Target Start/End: Original strand, 9027135 - 9027241
Alignment:
Q  182 atacgaacacggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggta 281  Q
    ||||| |||||||| || ||||||||| ||||||||||| || ||||| | ||||||||||||| || ||||||| || || |||||||||||||||||     
T  9027135 atacggacacggactccggacacgacacggacactgacacgccgacaccgctaataatttgagataatcacataattccgtgtaattatatgtgtcggtg 9027234  T
Q  282 tcgtgtc 288  Q
    |||||||    
T  9027235 tcgtgtc 9027241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 188 - 280
Target Start/End: Complemental strand, 5732606 - 5732514
Alignment:
Q  188 acacggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggt 280  Q
    ||||||||||  ||||||||||||||||||||| || ||||| |||||||||||||||||| ||||||  |  || |||||||||||||||||    
T  5732606 acacggacactggacacgacatggacactgacacgccgacaccgttaataatttgagaaaatcacatattttagtgtaattatatgtgtcggt 5732514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 190 - 291
Target Start/End: Complemental strand, 8365613 - 8365512
Alignment:
Q  190 acggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggtatcgtgtcg 289  Q
    ||||||||||||||||||| ||||||||||| || |||||   ||||||||||| || | ||||||| ||||| |||||| | |||||||| ||||||||    
T  8365613 acggacaccagacacgacacggacactgacacgccgacacaactaataatttgaaaatatcacataattcggtgtaattacaagtgtcggtgtcgtgtcg 8365514  T
Q  290 gt 291  Q
    ||    
T  8365513 gt 8365512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 189 - 294
Target Start/End: Complemental strand, 34073442 - 34073337
Alignment:
Q  189 cacggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggtatcgtgtc 288  Q
    |||||||||  ||||||||| ||||||||||||||  |||  | |||||||||||||||| | ||||| || || |||||||||| |||||| |||||||    
T  34073442 cacggacactggacacgacacggacactgacatgccaacatcgctaataatttgagaaaatctcataattcagtgtaattatatgggtcggtgtcgtgtc 34073343  T
Q  289 ggtgtc 294  Q
    ||||||    
T  34073342 ggtgtc 34073337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 182 - 297
Target Start/End: Original strand, 18367794 - 18367908
Alignment:
Q  182 atacgaacacggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggta 281  Q
    ||||| ||||||||||| |||||||||||||||| |||| || ||||| | ||||  ||| |||||| |||| ||  | || |||||||||||||||||     
T  18367794 atacggacacggacaccggacacgacatggacac-gacacgccgacacagctaatttttttagaaaatcacaaaatgcagtgtaattatatgtgtcggtg 18367892  T
Q  282 tcgtgtcggtgtcaga 297  Q
    ||||||||||||||||    
T  18367893 tcgtgtcggtgtcaga 18367908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 182 - 280
Target Start/End: Original strand, 7938073 - 7938171
Alignment:
Q  182 atacgaacacggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggt 280  Q
    ||||| ||||||||||| ||||||||||||||||||||| || ||||| | ||||||||||| |||| || |||| |  || |||||||| ||||||||    
T  7938073 atacggacacggacaccggacacgacatggacactgacacgccgacacagctaataatttgaaaaaatcatataatttagtgtaattataagtgtcggt 7938171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 188 - 294
Target Start/End: Complemental strand, 9107466 - 9107360
Alignment:
Q  188 acacggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggtatcgtgt 287  Q
    ||||||||||| ||||||||| ||||||| ||| || ||||| | ||||||||||| |||| |||| || || || |||||| | |||||||| ||||||    
T  9107466 acacggacaccggacacgacacggacactaacacgccgacacagctaataatttgaaaaaatcacaaaattcagtgtaattacaagtgtcggtgtcgtgt 9107367  T
Q  288 cggtgtc 294  Q
    |||||||    
T  9107366 cggtgtc 9107360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 211 - 322
Target Start/End: Complemental strand, 7723323 - 7723208
Alignment:
Q  211 gacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggtatcgtgtcggtgt----cagatacgcctaa 306  Q
    |||||||||| |  ||||| | |||||||||||||||| || |||| || | |||||||||||| ||||| ||||||||||||     | | ||||||||    
T  7723323 gacactgacacgtggacactgctaataatttgagaaaatcatataattcagcataattatatgtatcggtgtcgtgtcggtgttacggaaacacgcctaa 7723224  T
Q  307 tccgaggagtgtccgt 322  Q
    ||||||||||||||||    
T  7723223 tccgaggagtgtccgt 7723208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 198 - 280
Target Start/End: Original strand, 9658852 - 9658934
Alignment:
Q  198 cagacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggt 280  Q
    ||||||||||| ||||||||||| || ||||| | ||||||||| |||||| ||||||| || || ||||||||| |||||||    
T  9658852 cagacacgacacggacactgacacgccgacaccgctaataatttaagaaaatcacataattcagtgtaattatatttgtcggt 9658934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 237 - 298
Target Start/End: Complemental strand, 8931649 - 8931588
Alignment:
Q  237 aatttgagaaaaccacataagtcggtataattatatgtgtcggtatcgtgtcggtgtcagat 298  Q
    ||||||||||||  |||||| || |||||||||||||||||| | |||||||||||||||||    
T  8931649 aatttgagaaaataacataattcagtataattatatgtgtcgatgtcgtgtcggtgtcagat 8931588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 203 - 280
Target Start/End: Original strand, 19044442 - 19044519
Alignment:
Q  203 acgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggt 280  Q
    |||||||||||||||||| || ||||||  |||||||||||||| | ||||||| || || | |||||||||||||||    
T  19044442 acgacatggacactgacacgccgacacgactaataatttgagaatatcacataattcagtgttattatatgtgtcggt 19044519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 188 - 256
Target Start/End: Complemental strand, 426610 - 426542
Alignment:
Q  188 acacggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataa 256  Q
    ||||||| ||| ||||||||| ||||||||||| || ||||| ||||||||||||| |||| |||||||    
T  426610 acacggataccggacacgacacggacactgacacgccgacacagttaataatttgaaaaaatcacataa 426542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 182 - 294
Target Start/End: Original strand, 10294064 - 10294176
Alignment:
Q  182 atacgaacacggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggta 281  Q
    ||||| ||||| ||||| ||||||||| ||| |||||||||| || || | ||||||||||||| || | ||||  ||  | |||||||||||||||||     
T  10294064 atacggacacgaacaccggacacgacacggatactgacatgccgataccgctaataatttgagataatcgcatatttcaatgtaattatatgtgtcggtg 10294163  T
Q  282 tcgtgtcggtgtc 294  Q
    |||||| ||||||    
T  10294164 tcgtgttggtgtc 10294176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 205 - 280
Target Start/End: Complemental strand, 7996457 - 7996382
Alignment:
Q  205 gacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggt 280  Q
    |||| |||||||||||||| ||||| | |||||||||||||||| || |||| || || |||||||||| ||||||    
T  7996457 gacaaggacactgacatgccgacactgctaataatttgagaaaatcatataattcagtgtaattatatgcgtcggt 7996382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 205 - 280
Target Start/End: Original strand, 8022344 - 8022419
Alignment:
Q  205 gacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggt 280  Q
    |||| |||||||||||||| ||||| | |||||||||||||||| || |||| || || |||||||||| ||||||    
T  8022344 gacaaggacactgacatgccgacactgctaataatttgagaaaatcatataattcagtgtaattatatgcgtcggt 8022419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 233 - 288
Target Start/End: Complemental strand, 9025545 - 9025490
Alignment:
Q  233 taataatttgagaaaaccacataagtcggtataattatatgtgtcggtatcgtgtc 288  Q
    |||||||||||||||| ||||||| || || ||||||||||||||||| |||||||    
T  9025545 taataatttgagaaaatcacataattcagtgtaattatatgtgtcggtgtcgtgtc 9025490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 280
Target Start/End: Complemental strand, 7265667 - 7265597
Alignment:
Q  210 ggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggt 280  Q
    ||||||||||| ||  |||| | |||||||||||||||| ||||||| || || |||||||||||||||||    
T  7265667 ggacactgacacgccaacaccgctaataatttgagaaaatcacataattcagtgtaattatatgtgtcggt 7265597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 294
Target Start/End: Original strand, 26562676 - 26562758
Alignment:
Q  212 acactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggtatcgtgtcggtgtc 294  Q
    |||| |||| || ||||| | ||| |||||||||||| ||||||| || || ||||||||||||||| | |||||||||||||    
T  26562676 acacggacacgccgacactgctaaaaatttgagaaaatcacataattcagtgtaattatatgtgtcgatgtcgtgtcggtgtc 26562758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 188 - 297
Target Start/End: Complemental strand, 5000722 - 5000613
Alignment:
Q  188 acacggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggtatcgtgt 287  Q
    ||||||||||| |||| |||| ||| ||||||| |  ||||| | |||||||| ||||||| ||||| | || |||||||| ||| |||| || || |||    
T  5000722 acacggacaccggacatgacacggatactgacacgtcgacaccgctaataattcgagaaaatcacatgattcagtataattttatatgtcagtgtcatgt 5000623  T
Q  288 cggtgtcaga 297  Q
    ||||||||||    
T  5000622 cggtgtcaga 5000613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 217 - 270
Target Start/End: Complemental strand, 32839713 - 32839660
Alignment:
Q  217 gacatgctgacacggttaataatttgagaaaaccacataagtcggtataattat 270  Q
    ||||||||||||| |||||||||||||||||| |||||||  | ||||||||||    
T  32839713 gacatgctgacactgttaataatttgagaaaatcacataatccagtataattat 32839660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 264 - 322
Target Start/End: Complemental strand, 34384995 - 34384935
Alignment:
Q  264 taattatatgtgtcggtatcgtgtcggtgtcagatac--gcctaatccgaggagtgtccgt 322  Q
    ||||||||||||||||| |||||| ||||||||| ||  | ||||||||||||||||||||    
T  34384995 taattatatgtgtcggtttcgtgttggtgtcagacacgtgtctaatccgaggagtgtccgt 34384935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 248
Target Start/End: Original strand, 6389706 - 6389766
Alignment:
Q  188 acacggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaa 248  Q
    |||| |||||| ||||||||| ||||||| ||| || ||||||| ||||||||||||||||    
T  6389706 acacagacaccggacacgacacggacactcacacgccgacacggataataatttgagaaaa 6389766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 280
Target Start/End: Complemental strand, 7977926 - 7977834
Alignment:
Q  188 acacggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggt 280  Q
    ||||||||||  ||||||||||||| ||||||| || ||||| | ||||||||||| ||||  |||||| || || |||||| | ||||||||    
T  7977926 acacggacactggacacgacatggatactgacacgccgacacagctaataatttgaaaaaattacataattcagtgtaattacaagtgtcggt 7977834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 288
Target Start/End: Complemental strand, 10770758 - 10770670
Alignment:
Q  200 gacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggtatcgtgtc 288  Q
    ||||||||||||||||||||| ||  ||||   ||||||||||| |||| ||||||| || || |||||| | |||||||| |||||||    
T  10770758 gacacgacatggacactgacacgccaacacaactaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcgtgtc 10770670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 200 - 294
Target Start/End: Complemental strand, 10339210 - 10339115
Alignment:
Q  200 gacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggt-ataattatatgtgtcggtatcgtgtcggtgtc 294  Q
    ||||||||||| ||||||||| || ||||| |  | ||||||||||||| ||||||| || ||  |||||||||||||| ||  ||||||||||||    
T  10339210 gacacgacatgaacactgacacgccgacaccgcgattaatttgagaaaatcacataattcagtgttaattatatgtgtcagtgccgtgtcggtgtc 10339115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 202 - 277
Target Start/End: Complemental strand, 17341746 - 17341671
Alignment:
Q  202 cacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtc 277  Q
    ||||||| || |||||||| || ||||| ||||||||||||| |||| ||||||| || || |||||||| |||||    
T  17341746 cacgacacgggcactgacacgccgacaccgttaataatttgataaaatcacataattcagtgtaattataagtgtc 17341671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 214 - 277
Target Start/End: Original strand, 19040341 - 19040404
Alignment:
Q  214 actgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtc 277  Q
    ||||||| || ||||| | |||||||||||||||| ||||||| || || ||||||||||||||    
T  19040341 actgacacgccgacaccgctaataatttgagaaaatcacataattcagtgtaattatatgtgtc 19040404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 189 - 280
Target Start/End: Original strand, 34595098 - 34595189
Alignment:
Q  189 cacggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggt 280  Q
    |||||||||| ||||||||| ||||| ||||| || |||||   ||||||||||| |||| ||||||| || || |||||| | ||||||||    
T  34595098 cacggacaccggacacgacacggacaatgacacgccgacacaactaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggt 34595189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 291
Target Start/End: Original strand, 6665221 - 6665279
Alignment:
Q  233 taataatttgagaaaaccacataagtcggtataattatatgtgtcggtatcgtgtcggt 291  Q
    |||||||||||| ||| ||||||| || |  ||||||| ||||||||||||||||||||    
T  6665221 taataatttgagtaaatcacataattcagagtaattatttgtgtcggtatcgtgtcggt 6665279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 290
Target Start/End: Original strand, 12696299 - 12696389
Alignment:
Q  200 gacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggtatcgtgtcgg 290  Q
    ||||||||| ||||||||||| || ||||| | ||||||||||| ||||  |||||| || || |||||| | ||||| || |||||||||    
T  12696299 gacacgacacggacactgacacgccgacacagctaataatttgaaaaaattacataattcagtgtaattacaagtgtcagtgtcgtgtcgg 12696389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 270
Target Start/End: Complemental strand, 31579309 - 31579239
Alignment:
Q  200 gacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattat 270  Q
    |||||||||||||||||| ||  |  |||| |||||||||||||||||| ||||||| || || |||||||    
T  31579309 gacacgacatggacactgccacaccaacaccgttaataatttgagaaaatcacataattcagtgtaattat 31579239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 294
Target Start/End: Complemental strand, 9195805 - 9195744
Alignment:
Q  233 taataatttgagaaaaccacataagtcggtataattatatgtgtcggtatcgtgtcggtgtc 294  Q
    ||||||||||||||||  |||||| |  || ||||||||||||||||| |||||| ||||||    
T  9195805 taataatttgagaaaatgacataatttagtgtaattatatgtgtcggtgtcgtgtaggtgtc 9195744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 294
Target Start/End: Original strand, 9617442 - 9617503
Alignment:
Q  233 taataatttgagaaaaccacataagtcggtataattatatgtgtcggtatcgtgtcggtgtc 294  Q
    |||||||||||||||| ||||||| ||  | ||||||||||||||||| ||||  |||||||    
T  9617442 taataatttgagaaaatcacataattcaatgtaattatatgtgtcggtgtcgtcgcggtgtc 9617503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 278
Target Start/End: Original strand, 13851712 - 13851789
Alignment:
Q  201 acacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcg 278  Q
    |||||||| ||||||||||| |  ||||| | ||||||||||||||||  || ||| || || |||||||||||||||    
T  13851712 acacgacacggacactgacacgtcgacaccgctaataatttgagaaaataacgtaattcagtgtaattatatgtgtcg 13851789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 300
Target Start/End: Original strand, 21142124 - 21142193
Alignment:
Q  231 gttaataatttgagaaaaccacataagtcggtataattatatgtgtcggtatcgtgtcggtgtcagatac 300  Q
    |||||||||||||||||| || |||| || || || |||||||||||| |||||||| ||| | ||||||    
T  21142124 gttaataatttgagaaaatcatataattcagtctagttatatgtgtcgatatcgtgttggtattagatac 21142193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 243
Target Start/End: Complemental strand, 6898378 - 6898322
Alignment:
Q  187 aacacggacaccagacacgacatggacactgacatgctgacacggttaataatttga 243  Q
    |||||| ||| | ||||||| ||||||||||||| |||||||||  |||||||||||    
T  6898378 aacacgaacaacggacacgatatggacactgacacgctgacacgtctaataatttga 6898322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 280
Target Start/End: Original strand, 7086766 - 7086850
Alignment:
Q  196 accagacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggt 280  Q
    |||||||||||||  ||||| |||| |  | ||| | |||||||||||||||| ||||||| |  || |||||||||||||||||    
T  7086766 accagacacgacacagacaccgacacgtcggcactgctaataatttgagaaaatcacataatttagtgtaattatatgtgtcggt 7086850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 280
Target Start/End: Original strand, 9629358 - 9629438
Alignment:
Q  200 gacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggt 280  Q
    ||||||||| ||| | ||||| || ||||| |  ||||||||||||||| ||||||| ||  | |||||||||||||||||    
T  9629358 gacacgacacggatattgacacgccgacaccgccaataatttgagaaaatcacataattcaatgtaattatatgtgtcggt 9629438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 279
Target Start/End: Complemental strand, 30866245 - 30866149
Alignment:
Q  183 tacgaacacggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcgg 279  Q
    |||||| ||||||||| |||| ||||  ||||| ||||  |  |||| | |||||||||||||||| ||||||| ||  | ||||||||||||||||    
T  30866245 tacgaatacggacaccggacatgacactgacaccgacacaccaacaccgctaataatttgagaaaatcacataattcaatgtaattatatgtgtcgg 30866149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 289
Target Start/End: Complemental strand, 32320740 - 32320664
Alignment:
Q  213 cactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggtatcgtgtcg 289  Q
    |||||| | |||||||| ||||||||||||| |||| ||||||| ||  | | ||||||||| ||||| ||||||||    
T  32320740 cactgatacgctgacaccgttaataatttgataaaatcacataattcaatgtcattatatgtatcggtgtcgtgtcg 32320664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 174 - 297
Target Start/End: Complemental strand, 263482 - 263359
Alignment:
Q  174 aaacacatatacgaacacggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatg 273  Q
    ||||||| ||||| ||||||||||  || |||||| |||||||||||||   |||| | |||||||||||||||||||||||| || || |||||||| |    
T  263482 aaacacagatacggacacggacactggatacgacacggacactgacatgtcaacactgctaataatttgagaaaaccacataattcagtgtaattataag 263383  T
Q  274 tgtcggtatcgtgtcggtgtcaga 297  Q
    |||| || ||||||||||||||||    
T  263382 tgtcagtgtcgtgtcggtgtcaga 263359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 37)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 201 - 322
Target Start/End: Complemental strand, 22423895 - 22423773
Alignment:
Q  201 acacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggtatcgtgtcggtgtc-agata 299  Q
    |||||||| ||| |||||||  |||||||   |||||||||||||||| ||||||| ||  ||||||||||| ||||||| |||||||||||||  || |    
T  22423895 acacgacacggatactgacaccctgacactactaataatttgagaaaatcacataattcaatataattatatatgtcggtgtcgtgtcggtgtctggaca 22423796  T
Q  300 cgcctaatccgaggagtgtccgt 322  Q
    |||||||||||||||||||||||    
T  22423795 cgcctaatccgaggagtgtccgt 22423773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 209 - 294
Target Start/End: Original strand, 3966487 - 3966572
Alignment:
Q  209 tggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggtatcgtgtcggtgtc 294  Q
    ||||||||||||||| ||||| | |||||||||||||||| |||| || || || ||||||||||||||||| ||||||| |||||    
T  3966487 tggacactgacatgccgacaccgctaataatttgagaaaatcacacaattcagtgtaattatatgtgtcggtgtcgtgtcagtgtc 3966572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 182 - 280
Target Start/End: Complemental strand, 21191158 - 21191060
Alignment:
Q  182 atacgaacacggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggt 280  Q
    ||||| |||| |||||| ||||||||| |||||||||||||| ||||| | ||||||||||| |||| ||||||| || || |||||| | ||||||||    
T  21191158 atacggacactgacaccggacacgacacggacactgacatgccgacacagctaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggt 21191060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 182 - 318
Target Start/End: Complemental strand, 13287501 - 13287366
Alignment:
Q  182 atacgaacacggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggta 281  Q
    ||||| ||||||||||| ||||||||| ||||||| ||| |  ||||| | ||||||||||| |||| ||||||| || || ||| || | ||||||||     
T  13287501 atacggacacggacaccggacacgacacggacactaacacgtcgacacagataataatttgaaaaaatcacataattcagtgtaactacaagtgtcggtg 13287402  T
Q  282 tcgtgtcggtgtcagatacgcctaatccgaggagtgt 318  Q
    |||||||  |||| || |||||||||| |||||||||    
T  13287401 tcgtgtc-ctgtcggacacgcctaatctgaggagtgt 13287366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 179 - 297
Target Start/End: Complemental strand, 19552648 - 19552532
Alignment:
Q  179 catatacgaacacggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcg 278  Q
    ||||||| ||||||| ||||  |||||||| ||||||||||| || ||||| ||||||||||||| |||| ||||||| |  || ||  |||| ||||||    
T  19552648 catatacaaacacggccaccgaacacgacacggacactgacacgccgacacagttaataatttgaaaaaatcacataattaagtgta--tataagtgtcg 19552551  T
Q  279 gtatcgtgtcggtgtcaga 297  Q
     | ||||||||||||||||    
T  19552550 atgtcgtgtcggtgtcaga 19552532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 225 - 295
Target Start/End: Complemental strand, 7175078 - 7175008
Alignment:
Q  225 gacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggtatcgtgtcggtgtca 295  Q
    ||||| |||||||||||||||||| ||||||| | || ||||||||||||||| | ||||||||| |||||    
T  7175078 gacaccgttaataatttgagaaaatcacataatttggcataattatatgtgtcagcatcgtgtcgatgtca 7175008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 223 - 287
Target Start/End: Complemental strand, 6471950 - 6471886
Alignment:
Q  223 ctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggtatcgtgt 287  Q
    ||||||||| |||||||||||||||| ||||||| || || ||||||||||||| ||| ||||||    
T  6471950 ctgacacggctaataatttgagaaaatcacataattcagtgtaattatatgtgtgggtgtcgtgt 6471886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 182 - 294
Target Start/End: Original strand, 21522707 - 21522819
Alignment:
Q  182 atacgaacacggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggta 281  Q
    ||||| |||||| |||| ||||||||| ||||||||||| || ||||| | ||||||||| | ||||  |||||| || || |||||| |  |||||||     
T  21522707 atacggacacggtcaccggacacgacacggacactgacacgccgacacagctaataattttaaaaaataacataattcagtgtaattacaattgtcggtg 21522806  T
Q  282 tcgtgtcggtgtc 294  Q
    |||||||||||||    
T  21522807 tcgtgtcggtgtc 21522819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 182 - 294
Target Start/End: Original strand, 21533273 - 21533385
Alignment:
Q  182 atacgaacacggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggta 281  Q
    ||||| |||||| |||| ||||||||| ||||||||||| || ||||| | ||||||||| | ||||  |||||| || || |||||| |  |||||||     
T  21533273 atacggacacggtcaccggacacgacacggacactgacacgccgacacagctaataattttaaaaaataacataattcagtgtaattacaattgtcggtg 21533372  T
Q  282 tcgtgtcggtgtc 294  Q
    |||||||||||||    
T  21533373 tcgtgtcggtgtc 21533385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 182 - 294
Target Start/End: Original strand, 21541987 - 21542099
Alignment:
Q  182 atacgaacacggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggta 281  Q
    ||||| |||||||||||||||||||||  |||| |||||||| |||||   ||||||||| | || |  |||||| || || |||||| | ||||||||     
T  21541987 atacggacacggacaccagacacgacacagacattgacatgccgacacaactaataatttaaaaagataacataattcagtgtaattacaagtgtcggtg 21542086  T
Q  282 tcgtgtcggtgtc 294  Q
    |||||||||||||    
T  21542087 tcgtgtcggtgtc 21542099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 210 - 294
Target Start/End: Original strand, 39698526 - 39698610
Alignment:
Q  210 ggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggtatcgtgtcggtgtc 294  Q
    ||||||||||| |||||||| | ||||||||||| |||| ||||||| || || |||||| | ||||| || |||||||||||||    
T  39698526 ggacactgacacgctgacacagctaataatttgaaaaaatcacataattcagtgtaattacaagtgtcagtgtcgtgtcggtgtc 39698610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 233 - 319
Target Start/End: Original strand, 36838551 - 36838638
Alignment:
Q  233 taataatttgagaaaaccacataagtcggtataattatatgtgtcggtatcgtg-tcggtgtcagatacgcctaatccgaggagtgtc 319  Q
    ||||||||||||||||  |||||| |  || ||||||||||||||||| ||||| | |||||| || ||||||||||| |||||||||    
T  36838551 taataatttgagaaaattacataatttagtgtaattatatgtgtcggtgtcgtgtttggtgtccgacacgcctaatccaaggagtgtc 36838638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 294
Target Start/End: Original strand, 18592036 - 18592142
Alignment:
Q  188 acacggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggtatcgtgt 287  Q
    |||||||||| ||| |||||||  ||||||| |||| ||||| | ||||| ||| ||||||  |||||| ||  | |||||||||||| |||| ||||||    
T  18592036 acacggacacgagatacgacataaacactgatatgccgacaccgctaatattttaagaaaattacataattcaatgtaattatatgtgccggtgtcgtgt 18592135  T
Q  288 cggtgtc 294  Q
    |||||||    
T  18592136 cggtgtc 18592142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 293
Target Start/End: Complemental strand, 3751981 - 3751921
Alignment:
Q  233 taataatttgagaaaaccacataagtcggtataattatatgtgtcggtatcgtgtcggtgt 293  Q
    |||||||||||||||| ||||||| |  ||||||||||||||||  |||||||||| ||||    
T  3751981 taataatttgagaaaatcacataactaagtataattatatgtgttagtatcgtgtcagtgt 3751921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 280
Target Start/End: Complemental strand, 16203891 - 16203799
Alignment:
Q  188 acacggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggt 280  Q
    |||| ||||||  ||| |||| ||||||| |||||| ||||| | |||||||||||||||| | ||||| |  || |||||||||||||||||    
T  16203891 acacagacaccgaacatgacacggacactaacatgccgacactgctaataatttgagaaaatctcataatttagtgtaattatatgtgtcggt 16203799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 256
Target Start/End: Original strand, 26716119 - 26716175
Alignment:
Q  200 gacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataa 256  Q
    |||||||||| |||| |||||||| ||||| | |||||||||||||||| |||||||    
T  26716119 gacacgacatagacattgacatgccgacactgctaataatttgagaaaatcacataa 26716175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 256
Target Start/End: Original strand, 26985859 - 26985915
Alignment:
Q  200 gacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataa 256  Q
    |||||||||| |||| |||||||| ||||| | |||||||||||||||| |||||||    
T  26985859 gacacgacatagacattgacatgccgacactgctaataatttgagaaaatcacataa 26985915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 211 - 294
Target Start/End: Original strand, 11685925 - 11686007
Alignment:
Q  211 gacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggtatcgtgtcggtgtc 294  Q
    ||||||||||||| ||||| | |||||||||||||||  | ||||| |  || ||||||||||||||||| |||| ||||||||    
T  11685925 gacactgacatgccgacaccgctaataatttgagaaagtcgcataatttagtgtaattatatgtgtcggtgtcgt-tcggtgtc 11686007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 211 - 294
Target Start/End: Original strand, 19429418 - 19429501
Alignment:
Q  211 gacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggtatcgtgtcggtgtc 294  Q
    |||| |||||||| ||||  |||||||||||||||||| ||||||| |  || ||| ||| ||||||| | |||||||||||||    
T  19429418 gacattgacatgccgacaatgttaataatttgagaaaatcacataacttagtgtaaatatctgtgtcgctgtcgtgtcggtgtc 19429501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 318
Target Start/End: Original strand, 2436908 - 2437017
Alignment:
Q  211 gacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggtatcgtgtcggtgtc--agatacgcctaatc 308  Q
    |||||||||| || ||||| | ||||||||||  |||| ||||||| ||| | | ||||||||||||||| ||||||| |   |  ||| ||||||||||    
T  2436908 gacactgacacgccgacaccgctaataatttgcaaaaatcacataattcgttgtgattatatgtgtcggtgtcgtgtccgacaccaagacacgcctaatc 2437007  T
Q  309 cgaggagtgt 318  Q
    ||||||||||    
T  2437008 cgaggagtgt 2437017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 248
Target Start/End: Original strand, 15382434 - 15382500
Alignment:
Q  182 atacgaacacggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaa 248  Q
    ||||| ||||||||||| ||||||||| ||||| ||||| || ||||| | ||||||||||| ||||    
T  15382434 atacggacacggacaccggacacgacacggacaatgacacgccgacacagctaataatttgaaaaaa 15382500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 248
Target Start/End: Complemental strand, 19820488 - 19820430
Alignment:
Q  190 acggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaa 248  Q
    ||||||||| ||||||||| |||||||||||  | ||||| | ||||||||||||||||    
T  19820488 acggacaccggacacgacacggacactgacactccgacaccgctaataatttgagaaaa 19820430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 297
Target Start/End: Original strand, 25817481 - 25817567
Alignment:
Q  211 gacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggtatcgtgtcggtgtcaga 297  Q
    ||||| |||||| |||||| | ||||||||| | |||| || || | || |||| |||||||||||| ||||| |||||||||||||    
T  25817481 gacacagacatgttgacactgctaataatttaaaaaaatcatatgattcagtatgattatatgtgtcagtatcatgtcggtgtcaga 25817567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 280
Target Start/End: Original strand, 26312734 - 26312824
Alignment:
Q  190 acggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggt 280  Q
    ||||||||  ||||||||||||||||||| |||| || || |  ||||||||||||||| ||  ||| || || ||||||||||| |||||    
T  26312734 acggacactggacacgacatggacactgatatgccgataccgcaaataatttgagaaaatcaattaattcagtgtaattatatgtatcggt 26312824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 248
Target Start/End: Original strand, 27112577 - 27112643
Alignment:
Q  182 atacgaacacggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaa 248  Q
    ||||| ||||||||| | |||| |||||||| ||||||||||||| |  ||||||||||| ||||||    
T  27112577 atacggacacggacatcggacaggacatggatactgacatgctgatatcgttaataatttaagaaaa 27112643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 243
Target Start/End: Complemental strand, 36642853 - 36642803
Alignment:
Q  193 gacaccagacacgacatggacactgacatgctgacacggttaataatttga 243  Q
    |||||| ||||||||| ||||||||||| || ||||| |||||||||||||    
T  36642853 gacaccggacacgacacggacactgacacgccgacacagttaataatttga 36642803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 294
Target Start/End: Complemental strand, 37328940 - 37328834
Alignment:
Q  188 acacggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggtatcgtgt 287  Q
    |||||||||||  |||||||| ||||||||| |  | ||||| |  |||||||||  |||| |||| || || || |||||| |||||||||| ||||||    
T  37328940 acacggacaccgaacacgacacggacactgatacaccgacacagcaaataatttgtaaaaatcacaaaattcagtgtaattacatgtgtcggtgtcgtgt 37328841  T
Q  288 cggtgtc 294  Q
    |||||||    
T  37328840 cggtgtc 37328834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 303
Target Start/End: Original strand, 6035469 - 6035560
Alignment:
Q  211 gacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggtatcgtgtcggtgtcagatacgcc 303  Q
    |||||||||| || ||||| | |||||||||||||||   | |||| || || ||||||||| ||||||| ||||||||||| |||| |||||    
T  6035469 gacactgacacgccgacaccgctaataatttgagaaata-atataattcagtgtaattatatttgtcggtgtcgtgtcggtgacagacacgcc 6035560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 248
Target Start/End: Complemental strand, 15410540 - 15410484
Alignment:
Q  192 ggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaa 248  Q
    ||||| ||||||||||| ||||||||||| || ||||| | ||||||||| ||||||    
T  15410540 ggacatcagacacgacacggacactgacacgccgacaccgctaataatttaagaaaa 15410484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 256
Target Start/End: Original strand, 17123011 - 17123079
Alignment:
Q  188 acacggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataa 256  Q
    ||||||||| | ||||  ||||||||||||||| ||  |||| | |||||||||||||||| |||||||    
T  17123011 acacggacatcggacataacatggacactgacacgccaacaccgctaataatttgagaaaatcacataa 17123079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 294
Target Start/End: Original strand, 19579658 - 19579770
Alignment:
Q  182 atacgaacacggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggta 281  Q
    ||||| |||| |||||| || || ||| ||||||||| | || ||||| | |||||||||||||||| ||||||| |  ||  ||||| | ||||||||     
T  19579658 atacgtacaccgacaccggatacaacacggacactgatacgccgacacagctaataatttgagaaaatcacataatttagtgcaattacaagtgtcggtg 19579757  T
Q  282 tcgtgtcggtgtc 294  Q
    ||||||| |||||    
T  19579758 tcgtgtcagtgtc 19579770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 242
Target Start/End: Original strand, 22013379 - 22013431
Alignment:
Q  190 acggacaccagacacgacatggacactgacatgctgacacggttaataatttg 242  Q
    ||||||||| ||||||||| ||||||||||| || ||||| | ||||||||||    
T  22013379 acggacaccggacacgacacggacactgacacgccgacacagctaataatttg 22013431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 275
Target Start/End: Complemental strand, 24273091 - 24273039
Alignment:
Q  223 ctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtg 275  Q
    ||||||| |||| ||||||||||||| ||||||| || || ||||||||||||    
T  24273091 ctgacacagttattaatttgagaaaatcacataattcagtgtaattatatgtg 24273039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 275
Target Start/End: Original strand, 24389123 - 24389175
Alignment:
Q  223 ctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtg 275  Q
    ||||||| |||| ||||||||||||| ||||||| || || ||||||||||||    
T  24389123 ctgacacagttattaatttgagaaaatcacataattcagtgtaattatatgtg 24389175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 280
Target Start/End: Complemental strand, 28588742 - 28588678
Alignment:
Q  216 tgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggt 280  Q
    ||||| || ||||| | |||||||||||||||| ||||||| || || |||||||| ||||||||    
T  28588742 tgacacgccgacaccggtaataatttgagaaaatcacataattcagtgtaattataggtgtcggt 28588678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 294
Target Start/End: Original strand, 30098311 - 30098395
Alignment:
Q  210 ggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggtatcgtgtcggtgtc 294  Q
    ||||||||||| |  || || |||||||||||||||||| ||||||| ||  | ||||||||  ||||||||||| ||| |||||    
T  30098311 ggacactgacacgacgaaaccgttaataatttgagaaaatcacataattcaatgtaattatagatgtcggtatcgagtcagtgtc 30098395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 248
Target Start/End: Original strand, 42469184 - 42469244
Alignment:
Q  188 acacggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaa 248  Q
    |||||||||||  |||||||| ||| | ||||| || ||||||| ||||||||||||||||    
T  42469184 acacggacaccgaacacgacacggataatgacacgccgacacggataataatttgagaaaa 42469244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 34)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 190 - 296
Target Start/End: Complemental strand, 10572683 - 10572577
Alignment:
Q  190 acggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggtatcgtgtcg 289  Q
    ||||||||| ||||||||||| ||||||||| || |||||   |||||||||||||||| ||||||| ||||| |||||| |||||||||| | |||| |    
T  10572683 acggacaccggacacgacatgaacactgacacgccgacaccactaataatttgagaaaatcacataattcggtgtaattaaatgtgtcggtgttgtgttg 10572584  T
Q  290 gtgtcag 296  Q
    |||||||    
T  10572583 gtgtcag 10572577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 192 - 280
Target Start/End: Original strand, 9709787 - 9709875
Alignment:
Q  192 ggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggt 280  Q
    ||||| ||||||||||| ||||||||||||||  |||| | |||||||||||||||| ||||||| ||| | |||||||||||||||||    
T  9709787 ggacatcagacacgacacggacactgacatgcctacaccgctaataatttgagaaaatcacataattcgttgtaattatatgtgtcggt 9709875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 182 - 290
Target Start/End: Complemental strand, 1486811 - 1486703
Alignment:
Q  182 atacgaacacggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggta 281  Q
    ||||| ||||||| ||| || |||||| ||| ||||||| |||||||| | ||||||||||| |||| ||||||| || || |||||||| ||||||||     
T  1486811 atacggacacggataccggatacgacacggatactgacacgctgacacagctaataatttgaaaaaatcacataattcagtgtaattataagtgtcggtg 1486712  T
Q  282 tcgtgtcgg 290  Q
    |||||||||    
T  1486711 tcgtgtcgg 1486703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 188 - 287
Target Start/End: Original strand, 15323126 - 15323225
Alignment:
Q  188 acacggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggtatcgtgt 287  Q
    ||||||||||| |||||||||||||||||||||||  || || ||||||||||||| |||| ||||||| |  || ||||| || ||||| |||||||||    
T  15323126 acacggacaccggacacgacatggacactgacatgtcgatacagttaataatttgaaaaaatcacataatttagtgtaattgtaagtgtctgtatcgtgt 15323225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 235 - 322
Target Start/End: Original strand, 44482240 - 44482332
Alignment:
Q  235 ataatttgagaaaaccacataagtcggtataattatatgtgtcggtatcgtgtcggtgtcagatacg-----cctaatccgaggagtgtccgt 322  Q
    |||||||||||||| ||||||| || || ||||||||||||||||| ||||||||||||| || |||      ||||||||||||||||||||    
T  44482240 ataatttgagaaaatcacataattcagtgtaattatatgtgtcggtgtcgtgtcggtgtcggacacgacacagctaatccgaggagtgtccgt 44482332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 182 - 277
Target Start/End: Complemental strand, 398867 - 398772
Alignment:
Q  182 atacgaacacggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtc 277  Q
    ||||| || |||||||| ||||||||| ||||||||||| || ||||| | ||||||||||| |||| ||||||| || || |||||||| |||||    
T  398867 atacggacgcggacaccggacacgacacggacactgacacgccgacaccgctaataatttgaaaaaatcacataattcagtgtaattataggtgtc 398772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 172 - 294
Target Start/End: Complemental strand, 6612283 - 6612161
Alignment:
Q  172 tgaaacacatatacgaacacggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattata 271  Q
    |||| |||| ||||| ||||| ||||| ||||||||| ||||| ||||| || || || ||||||||||||| ||||  |||||| || || |||||| |    
T  6612283 tgaagcacagatacggacacgaacaccggacacgacacggacaatgacacgccgatacagttaataatttgaaaaaattacataattcagtgtaattaca 6612184  T
Q  272 tgtgtcggtatcgtgtcggtgtc 294  Q
     |||||||| |||||||| ||||    
T  6612183 agtgtcggtgtcgtgtcgatgtc 6612161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 182 - 272
Target Start/End: Original strand, 28674757 - 28674847
Alignment:
Q  182 atacgaacacggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatat 272  Q
    |||||||||| ||||| |||||| |||| ||| | |||| ||| |||| ||||||||||||||||||  |||||| || ||||||||||||    
T  28674757 atacgaacacagacactagacacaacatagacgccgacacgctaacaccgttaataatttgagaaaattacataattcagtataattatat 28674847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 200 - 294
Target Start/End: Original strand, 34315687 - 34315781
Alignment:
Q  200 gacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggtatcgtgtcggtgtc 294  Q
    ||||||||| ||| |||||||||| ||||| | |||   ||| | ||||| |||||| ||||| |||||||||||||||||||||| ||||||||    
T  34315687 gacacgacacggatactgacatgccgacacagctaaattttttaaaaaactacataattcggtgtaattatatgtgtcggtatcgtatcggtgtc 34315781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 192 - 288
Target Start/End: Complemental strand, 7918303 - 7918207
Alignment:
Q  192 ggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggtatcgtgtc 288  Q
    ||||||| |||||||||  |||| ||||| |||||||    |||||||||||||||| ||||||| || || |||||||||||||| || |||||||    
T  7918303 ggacaccggacacgacacagacaatgacacgctgacatcactaataatttgagaaaatcacataattcagtgtaattatatgtgtcagtgtcgtgtc 7918207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 225 - 280
Target Start/End: Complemental strand, 1864939 - 1864884
Alignment:
Q  225 gacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggt 280  Q
    ||||| |||||||||||||||||| ||||||| || || |||||||||||||||||    
T  1864939 gacacagttaataatttgagaaaatcacataattcagtgtaattatatgtgtcggt 1864884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 235 - 294
Target Start/End: Original strand, 25361896 - 25361955
Alignment:
Q  235 ataatttgagaaaaccacataagtcggtataattatatgtgtcggtatcgtgtcggtgtc 294  Q
    |||||||||||||| ||||||| || || |||||||||||||| || |||||||||||||    
T  25361896 ataatttgagaaaatcacataattcagtgtaattatatgtgtcagtgtcgtgtcggtgtc 25361955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 205 - 280
Target Start/End: Original strand, 36878441 - 36878516
Alignment:
Q  205 gacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggt 280  Q
    ||||| |||||||||| || ||||| | |||||||||||||||| ||||||| || || |||||||| ||||||||    
T  36878441 gacatagacactgacacgccgacaccgctaataatttgagaaaatcacataattcagtgtaattataggtgtcggt 36878516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 254
Target Start/End: Complemental strand, 15641130 - 15641060
Alignment:
Q  184 acgaacacggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacat 254  Q
    ||||||||||||| | |||| |||| |||||||||||||| ||||| | ||||||||| |||||| |||||    
T  15641130 acgaacacggacatcggacatgacacggacactgacatgccgacactgctaataatttaagaaaatcacat 15641060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 223 - 301
Target Start/End: Original strand, 34371712 - 34371789
Alignment:
Q  223 ctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggtatcgtgtcggtgtcagatacg 301  Q
    ||||||| | |||||||| ||||||| ||||||| || || ||||||||||||||||| |||||| |||||| ||||||    
T  34371712 ctgacaccgctaataatt-gagaaaatcacataattcagtgtaattatatgtgtcggtgtcgtgttggtgtcggatacg 34371789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 280
Target Start/End: Complemental strand, 39130861 - 39130771
Alignment:
Q  190 acggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggt 280  Q
    ||||||||| ||||||||||||| | ||||| ||||||||  |||||||||| ||||||  | |||| |  || |||||||||||||||||    
T  39130861 acggacaccggacacgacatggatattgacacgctgacactattaataattttagaaaattatataatttagtgtaattatatgtgtcggt 39130771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 292
Target Start/End: Complemental strand, 40285756 - 40285646
Alignment:
Q  182 atacgaacacggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggta 281  Q
    ||||||||| ||| ||||| ||||| |||||||||||||  |  |||| | |||||||||||||||| | ||||| || || || | |||||||||| |     
T  40285756 atacgaacatggaaaccaggcacgagatggacactgacacaccaacaccgctaataatttgagaaaatcgcataattcagtgtagtcatatgtgtcgatg 40285657  T
Q  282 tcgtgtcggtg 292  Q
    |||||||||||    
T  40285656 tcgtgtcggtg 40285646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 294
Target Start/End: Original strand, 47989461 - 47989566
Alignment:
Q  188 acacggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggtatcgtgt 287  Q
    ||||||| |||||||||||||  |||||||||| || |||||  | |||||||| | |||| ||||||| || || |||||| | |||||||| ||||||    
T  47989461 acacggataccagacacgacacagacactgacacgccgacacaat-aataatttaaaaaaatcacataattcagtgtaattacaagtgtcggtgtcgtgt 47989559  T
Q  288 cggtgtc 294  Q
    |||||||    
T  47989560 cggtgtc 47989566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 211 - 280
Target Start/End: Original strand, 21530675 - 21530744
Alignment:
Q  211 gacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggt 280  Q
    ||||| |||| || ||||| |||||||||||||||||| || |||| | |||||||||||| ||||||||    
T  21530675 gacacagacacgccgacaccgttaataatttgagaaaatcatataatttggtataattataagtgtcggt 21530744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 182 - 291
Target Start/End: Original strand, 38503277 - 38503386
Alignment:
Q  182 atacgaacacggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggta 281  Q
    ||||| ||||||||||  |||| |||| ||||||| |||  | ||||| | |||||||||||||||| || |||  || || |||||||||||||||||     
T  38503277 atacggacacggacacgggacatgacacggacactaacacaccgacaccgctaataatttgagaaaatcatatatttcagtgtaattatatgtgtcggtg 38503376  T
Q  282 tcgtgtcggt 291  Q
    || |||||||    
T  38503377 tcctgtcggt 38503386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 288
Target Start/End: Original strand, 6427325 - 6427413
Alignment:
Q  200 gacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggtatcgtgtc 288  Q
    |||||| || ||||||||||| ||  |||| | |||||||||||||||| ||||||| ||  | ||||||||||||| ||| |||||||    
T  6427325 gacacggcacggacactgacacgccaacaccgctaataatttgagaaaatcacataattcaatgtaattatatgtgttggtgtcgtgtc 6427413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 297
Target Start/End: Original strand, 9828052 - 9828116
Alignment:
Q  233 taataatttgagaaaaccacataagtcggtataattatatgtgtcggtatcgtgtcggtgtcaga 297  Q
    ||||||||||| |||| ||||||| || || ||||| ||||||||||| ||||||| ||||||||    
T  9828052 taataatttgataaaatcacataattcagtgtaattttatgtgtcggtgtcgtgtccgtgtcaga 9828116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 282 - 322
Target Start/End: Complemental strand, 48547987 - 48547947
Alignment:
Q  282 tcgtgtcggtgtcagatacgcctaatccgaggagtgtccgt 322  Q
    ||||||||||||| |||||||||||| ||||||||||||||    
T  48547987 tcgtgtcggtgtcggatacgcctaattcgaggagtgtccgt 48547947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 189 - 256
Target Start/End: Complemental strand, 2896216 - 2896149
Alignment:
Q  189 cacggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataa 256  Q
    |||||||| | ||||| ||| ||||||||||| || ||||| | |||||||||||||||| |||||||    
T  2896216 cacggacaacggacacaacacggacactgacacgccgacaccgctaataatttgagaaaatcacataa 2896149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 193 - 288
Target Start/End: Complemental strand, 20157441 - 20157346
Alignment:
Q  193 gacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggtatcgtgtc 288  Q
    |||||| ||||||||| || ||||||||    ||||| | ||||||| |||||||| ||||||| || || |||| |||||||||||| |||||||    
T  20157441 gacaccggacacgacacgggcactgacacatcgacaccgctaataatgtgagaaaatcacataattcagtgtaatcatatgtgtcggtgtcgtgtc 20157346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 188 - 271
Target Start/End: Original strand, 34298399 - 34298482
Alignment:
Q  188 acacggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattata 271  Q
    ||||| ||||||||||||||| ||| |||||||  | |||||   |||||||||||||||| ||||||| || || ||||||||    
T  34298399 acacgtacaccagacacgacacggaaactgacacaccgacaccactaataatttgagaaaatcacataattcagtgtaattata 34298482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 248
Target Start/End: Complemental strand, 5927434 - 5927376
Alignment:
Q  190 acggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaa 248  Q
    ||||||||| ||||||||| ||||||||||| ||| |||| | ||||||||||| ||||    
T  5927434 acggacaccggacacgacacggacactgacacgctaacactgctaataatttgaaaaaa 5927376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 294
Target Start/End: Original strand, 25934655 - 25934685
Alignment:
Q  264 taattatatgtgtcggtatcgtgtcggtgtc 294  Q
    |||||||||||||||||||||||||||||||    
T  25934655 taattatatgtgtcggtatcgtgtcggtgtc 25934685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 253
Target Start/End: Original strand, 40917713 - 40917779
Alignment:
Q  187 aacacggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaaccaca 253  Q
    |||||||||||| ||||||||| ||| ||||||| || ||||| | ||||||||||| |||| ||||    
T  40917713 aacacggacaccggacacgacacggatactgacacgccgacacagctaataatttgaaaaaatcaca 40917779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 279
Target Start/End: Complemental strand, 10577837 - 10577740
Alignment:
Q  182 atacgaacacggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcgg 279  Q
    ||||| ||||||||||| ||||||||| |||||| |||| || ||||| | ||||  ||| |||||| |||| ||  | || ||||||||||||||||    
T  10577837 atacggacacggacaccggacacgacacggacaccgacacgccgacacagctaatttttttagaaaatcacaaaatgcagtgtaattatatgtgtcgg 10577740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 280
Target Start/End: Original strand, 13997869 - 13997938
Alignment:
Q  211 gacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggt 280  Q
    |||||||||| || ||||| |||||| |||| | |||| ||||||| || || |||||||||||||||||    
T  13997869 gacactgacacgccgacaccgttaattatttaaaaaaatcacataattcagtgtaattatatgtgtcggt 13997938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 243
Target Start/End: Complemental strand, 48040556 - 48040503
Alignment:
Q  190 acggacaccagacacgacatggacactgacatgctgacacggttaataatttga 243  Q
    ||||||||| ||||||||| ||||||||||| || ||||| | |||||||||||    
T  48040556 acggacaccggacacgacacggacactgacacgccgacacagataataatttga 48040503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 256
Target Start/End: Original strand, 9103603 - 9103671
Alignment:
Q  188 acacggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataa 256  Q
    ||||| ||||| |||| |||  ||||||||||| || ||||| ||||||||||||| |||| |||||||    
T  9103603 acacgaacacctgacaggactcggacactgacacgccgacacagttaataatttgaaaaaatcacataa 9103671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 248
Target Start/End: Complemental strand, 13011312 - 13011252
Alignment:
Q  188 acacggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaa 248  Q
    |||||||||||  |||||||| | |||||||||||| ||||| | ||||||||||| ||||    
T  13011312 acacggacaccgaacacgacacgaacactgacatgccgacacagctaataatttgaaaaaa 13011252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 32)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 189 - 290
Target Start/End: Original strand, 1433418 - 1433519
Alignment:
Q  189 cacggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggtatcgtgtc 288  Q
    ||||||||||  |||||||| ||||| ||||| || ||||| |||||||||||||||||| ||||| | | ||| ||||||||||||||||| |||||||    
T  1433418 cacggacaccgaacacgacacggacattgacacgccgacaccgttaataatttgagaaaatcacatcatttggtgtaattatatgtgtcggtgtcgtgtc 1433517  T
Q  289 gg 290  Q
    ||    
T  1433518 gg 1433519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 188 - 297
Target Start/End: Complemental strand, 26329478 - 26329369
Alignment:
Q  188 acacggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggtatcgtgt 287  Q
    ||||||||||  |||||||||  |||||||||| || ||||  |||||||||||||||||| |||| || || || ||||||||||||||||  ||||||    
T  26329478 acacggacactggacacgacacagacactgacacgccgacatcgttaataatttgagaaaaacacacaattcagtgtaattatatgtgtcggcgtcgtgt 26329379  T
Q  288 cggtgtcaga 297  Q
    ||||||||||    
T  26329378 cggtgtcaga 26329369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 189 - 297
Target Start/End: Original strand, 19206014 - 19206122
Alignment:
Q  189 cacggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggtatcgtgtc 288  Q
    |||||| ||||||||||||| ||||||  ||| || ||||| | |||||||||||||||| ||||||| ||  ||||||||||||||||||| || |||     
T  19206014 cacggataccagacacgacacggacaccaacacgccgacaccgctaataatttgagaaaatcacataattcattataattatatgtgtcggtgtcttgtt 19206113  T
Q  289 ggtgtcaga 297  Q
    |||||||||    
T  19206114 ggtgtcaga 19206122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 190 - 294
Target Start/End: Original strand, 24339607 - 24339711
Alignment:
Q  190 acggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggtatcgtgtcg 289  Q
    ||||||||| ||||||||||||||| ||||| || ||||| | ||||||||||| |||| ||||||| || || |||||| | |||||||| ||||||||    
T  24339607 acggacaccggacacgacatggacattgacacgccgacacagctaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcgtgtcg 24339706  T
Q  290 gtgtc 294  Q
    |||||    
T  24339707 gtgtc 24339711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 206 - 293
Target Start/End: Original strand, 32308101 - 32308188
Alignment:
Q  206 acatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggtatcgtgtcggtgt 293  Q
    ||||||||||||||| || ||||| | |||||||||||||||| ||||||| || || ||||| |||||||| || ||||||||||||    
T  32308101 acatggacactgacacgccgacaccgctaataatttgagaaaatcacataattcagtgtaattgtatgtgtcagtgtcgtgtcggtgt 32308188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 182 - 289
Target Start/End: Complemental strand, 22602812 - 22602705
Alignment:
Q  182 atacgaacacggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggta 281  Q
    ||||| |||||| ||||  ||||||||  | |||||||| || ||||| || ||| ||||||||||| ||||||| || || |||||||||||||||||     
T  22602812 atacggacacgggcacctaacacgacacaggcactgacacgccgacaccgtaaattatttgagaaaatcacataattcagtgtaattatatgtgtcggtg 22602713  T
Q  282 tcgtgtcg 289  Q
    ||||||||    
T  22602712 tcgtgtcg 22602705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 193 - 280
Target Start/End: Original strand, 26733272 - 26733359
Alignment:
Q  193 gacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggt 280  Q
    |||||||||||||||| ||||||||||| |  ||||| | ||||||||||| |||| ||||||| || || |||||| ||||||||||    
T  26733272 gacaccagacacgacacggacactgacacgtcgacaccgctaataatttgacaaaatcacataattcagtctaattaaatgtgtcggt 26733359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 188 - 290
Target Start/End: Complemental strand, 5409932 - 5409830
Alignment:
Q  188 acacggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggtatcgtgt 287  Q
    |||| |||||| || |||||||||||||||||| ||||| || | ||||||||||| |||| ||||||| || ||  ||||| | |||||||| ||||||    
T  5409932 acacagacaccggatacgacatggacactgacacgctgatacagctaataatttgaaaaaatcacataattcagtgcaattacaagtgtcggtgtcgtgt 5409833  T
Q  288 cgg 290  Q
    |||    
T  5409832 cgg 5409830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 190 - 288
Target Start/End: Original strand, 27945006 - 27945104
Alignment:
Q  190 acggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggtatcgtgtc 288  Q
    ||||||||| ||||||||| ||||||||||| || |||||   ||||||||||||||||  |||||| || || |||||| | |||||||| |||||||    
T  27945006 acggacaccggacacgacacggacactgacacgccgacaccactaataatttgagaaaattacataattcagtgtaattacaagtgtcggtgtcgtgtc 27945104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 190 - 295
Target Start/End: Original strand, 7438671 - 7438776
Alignment:
Q  190 acggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggtatcgtgtcg 289  Q
    ||||||| | || |||||||  |||||||||||| ||||| ||||||||||||| |||| ||||||| ||  | |||||| | |||||||| || |||||    
T  7438671 acggacatcggatacgacataaacactgacatgccgacacagttaataatttgaaaaaatcacataattcaatgtaattacaagtgtcggtgtcatgtcg 7438770  T
Q  290 gtgtca 295  Q
    ||||||    
T  7438771 gtgtca 7438776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 189 - 278
Target Start/End: Original strand, 43249957 - 43250046
Alignment:
Q  189 cacggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcg 278  Q
    |||||||||| |||| |||| ||||||||||| || ||||||| ||||||||||||||||  ||||||  | || |||||||| ||||||    
T  43249957 cacggacaccggacaagacacggacactgacacgccgacacggataataatttgagaaaatgacataatacagtgtaattataagtgtcg 43250046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 192 - 280
Target Start/End: Original strand, 21826240 - 21826328
Alignment:
Q  192 ggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggt 280  Q
    |||||||||||||||||| |||||| ||| || ||||||  ||||||||| | |||| ||||||| || || |||| ||||||||||||    
T  21826240 ggacaccagacacgacatagacactaacacgccgacacgactaataatttaaaaaaatcacataactcagtctaataatatgtgtcggt 21826328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 200 - 291
Target Start/End: Original strand, 15902797 - 15902888
Alignment:
Q  200 gacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggtatcgtgtcggt 291  Q
    |||||||||  ||||||||||||| |||||   ||||||||||| |||| ||||||| |  || ||||||||||||||||| | ||||||||    
T  15902797 gacacgacacagacactgacatgccgacaccaataataatttgataaaatcacataatttagtgtaattatatgtgtcggtgttgtgtcggt 15902888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 189 - 243
Target Start/End: Original strand, 13585271 - 13585325
Alignment:
Q  189 cacggacaccagacacgacatggacactgacatgctgacacggttaataatttga 243  Q
    |||||||||||||||||| || ||||||||||||| ||||| | |||||||||||    
T  13585271 cacggacaccagacacgatattgacactgacatgccgacacagctaataatttga 13585325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 297
Target Start/End: Complemental strand, 26033512 - 26033448
Alignment:
Q  233 taataatttgagaaaaccacataagtcggtataattatatgtgtcggtatcgtgtcggtgtcaga 297  Q
    ||||||||||| |||| ||||||| || || |||||| | |||||||| ||||||||||||||||    
T  26033512 taataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtctcgtgtcggtgtcaga 26033448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 233 - 280
Target Start/End: Original strand, 3721101 - 3721148
Alignment:
Q  233 taataatttgagaaaaccacataagtcggtataattatatgtgtcggt 280  Q
    |||||||||||||||| ||||||| |  ||||||||||||||||||||    
T  3721101 taataatttgagaaaatcacataatttagtataattatatgtgtcggt 3721148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 223 - 294
Target Start/End: Original strand, 8160414 - 8160485
Alignment:
Q  223 ctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggtatcgtgtcggtgtc 294  Q
    ||||||| | ||||||||| ||||||  |||||| |  || ||||||||||||| |||||||||||||||||    
T  8160414 ctgacaccgctaataatttaagaaaattacataatttagtgtaattatatgtgttggtatcgtgtcggtgtc 8160485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 189 - 256
Target Start/End: Complemental strand, 11722193 - 11722126
Alignment:
Q  189 cacggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataa 256  Q
    |||||| ||| ||||||||| ||||||||||| || ||||| | ||| |||||||||||| |||||||    
T  11722193 cacggataccggacacgacacggacactgacacgccgacaccgctaacaatttgagaaaatcacataa 11722126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 233 - 280
Target Start/End: Complemental strand, 23849509 - 23849462
Alignment:
Q  233 taataatttgagaaaaccacataagtcggtataattatatgtgtcggt 280  Q
    ||||||||| |||||| ||||||| || ||||||||||||||||||||    
T  23849509 taataatttaagaaaaacacataattcagtataattatatgtgtcggt 23849462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 172 - 294
Target Start/End: Original strand, 30730984 - 30731104
Alignment:
Q  172 tgaaacacatatacgaacacggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattata 271  Q
    |||| |||| ||||| |||||||||||||||||||||   ||| || || || ||||| |  ||||||||||||||| ||||||| || || ||||  |     
T  30730984 tgaagcacagatacggacacggacaccagacacgacacatacagtggcacgccgacaccgcgaataatttgagaaaatcacataattcagtgtaat--tg 30731081  T
Q  272 tgtgtcggtatcgtgtcggtgtc 294  Q
    ||||||||| |||||| ||||||    
T  30731082 tgtgtcggtgtcgtgttggtgtc 30731104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 232 - 287
Target Start/End: Complemental strand, 35297724 - 35297669
Alignment:
Q  232 ttaataatttgagaaaaccacataagtcggtataattatatgtgtcggtatcgtgt 287  Q
    ||||||||||||||||| ||||||| ||  ||||||||||||||| ||| ||||||    
T  35297724 ttaataatttgagaaaatcacataattcattataattatatgtgttggtgtcgtgt 35297669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 318
Target Start/End: Complemental strand, 7328742 - 7328652
Alignment:
Q  233 taataatttgagaaaaccacataagtcggtataattatatgtgtcggtatcgtgtc-----ggtgtcagatacgcctaatccgaggagtgt 318  Q
    ||||||||||||||||  |||||| |  || ||||||||||||||||| |||||||     |||||| || ||||||||||||| ||||||    
T  7328742 taataatttgagaaaataacataatttagtgtaattatatgtgtcggtgtcgtgtcgtgttggtgtcggacacgcctaatccgatgagtgt 7328652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 280
Target Start/End: Complemental strand, 11061178 - 11061080
Alignment:
Q  182 atacgaacacggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggt 280  Q
    ||||| ||||||||| | || |||||| |||||||||||  | ||||| | ||||||||||| |||| ||||||| |  ||||||||| | ||||||||    
T  11061178 atacggacacggacatcggatacgacacggacactgacacaccgacacagctaataatttgaaaaaatcacataatttagtataattacaagtgtcggt 11061080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 198 - 288
Target Start/End: Complemental strand, 18013160 - 18013070
Alignment:
Q  198 cagacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggtatcgtgtc 288  Q
    |||| |||||| |||||||||||| |||||||   ||||||||| | ||||  |||||| || || |||||||||||||| || |||||||    
T  18013160 cagaaacgacacggacactgacattctgacactactaataatttaaaaaaattacataattcagtgtaattatatgtgtcagtgtcgtgtc 18013070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 218
Target Start/End: Complemental strand, 18213146 - 18213100
Alignment:
Q  172 tgaaacacatatacgaacacggacaccagacacgacatggacactga 218  Q
    |||| |||| ||||||||||| ||||||||||||||| |||||||||    
T  18213146 tgaagcacagatacgaacacgaacaccagacacgacacggacactga 18213100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 249
Target Start/End: Complemental strand, 4017878 - 4017829
Alignment:
Q  200 gacacgacatggacactgacatgctgacacggttaataatttgagaaaac 249  Q
    ||||||||| |||||| |||| || ||||||| |||||||||||||||||    
T  4017878 gacacgacacggacaccgacacgccgacacggataataatttgagaaaac 4017829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 290
Target Start/End: Original strand, 16341504 - 16341561
Alignment:
Q  233 taataatttgagaaaaccacataagtcggtataattatatgtgtcggtatcgtgtcgg 290  Q
    |||||||||||||||| ||||||| |  || |||||||||||| |||| |||||||||    
T  16341504 taataatttgagaaaatcacataattaagtgtaattatatgtgccggtgtcgtgtcgg 16341561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 280
Target Start/End: Original strand, 22484011 - 22484080
Alignment:
Q  211 gacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggt 280  Q
    |||||||||| || ||||| | ||||||||| ||||||   ||||| || ||||||||||||||||||||    
T  22484011 gacactgacacgccgacaccgctaataattttagaaaattgcataattcagtataattatatgtgtcggt 22484080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 294
Target Start/End: Complemental strand, 23128712 - 23128651
Alignment:
Q  233 taataatttgagaaaaccacataagtcggtataattatatgtgtcggtatcgtgtcggtgtc 294  Q
    ||||||||||||||||||| |||| || || |||| |||||||||||| | |||| ||||||    
T  23128712 taataatttgagaaaaccatataattcagtgtaatcatatgtgtcggtgttgtgttggtgtc 23128651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 269
Target Start/End: Original strand, 25481865 - 25481946
Alignment:
Q  188 acacggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataatta 269  Q
    ||||||||| | ||||| ||||||||| ||||| || ||||| | ||||||||||| |||| ||||||| || || ||||||    
T  25481865 acacggacatcggacacaacatggacaatgacacgccgacacagctaataatttgaaaaaatcacataattcagtgtaatta 25481946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 280
Target Start/End: Original strand, 20549778 - 20549846
Alignment:
Q  212 acactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggt 280  Q
    |||||||||  | ||||| | |||||||||||||||| ||| ||| || || |||||||||||||||||    
T  20549778 acactgacacaccgacaccgctaataatttgagaaaatcacgtaattcagtgtaattatatgtgtcggt 20549846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 283
Target Start/End: Original strand, 22868028 - 22868100
Alignment:
Q  211 gacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggtatc 283  Q
    |||||||||| || |||||   ||||||| |||||||| ||||||| || || |||||||||||||| |||||    
T  22868028 gacactgacacgccgacaccactaataatatgagaaaatcacataattcagtgtaattatatgtgtcagtatc 22868100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 5e-19; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 182 - 294
Target Start/End: Original strand, 22651933 - 22652045
Alignment:
Q  182 atacgaacacggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggta 281  Q
    ||||| |||| |||||| ||||||||| ||||||||||| || ||||| | ||||||||||| |||| ||||||| ||  |||||||| | ||||||||     
T  22651933 atacggacactgacaccggacacgacacggacactgacacgccgacacagctaataatttgaaaaaatcacataattcaatataattacaagtgtcggtg 22652032  T
Q  282 tcgtgtcggtgtc 294  Q
    |||||||||||||    
T  22652033 tcgtgtcggtgtc 22652045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 182 - 277
Target Start/End: Complemental strand, 24413662 - 24413566
Alignment:
Q  182 atacgaacacggacaccagacacgacatggacactgacatgctgacacggttaataa-tttgagaaaaccacataagtcggtataattatatgtgtc 277  Q
    ||||| ||||||||||||||||||||| |||||||||||| ||||||| |||||||| ||||||||||  |||||| || |  |||||||| |||||    
T  24413662 atacggacacggacaccagacacgacacggacactgacatactgacaccgttaataattttgagaaaaatacataattcagggtaattataagtgtc 24413566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 192 - 294
Target Start/End: Complemental strand, 29510396 - 29510294
Alignment:
Q  192 ggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggtatcgtgtcggt 291  Q
    ||||||| ||||||||| ||||||||||| || ||||| | ||||||||||| |||| |||| || || ||||||||| | |||||||| | ||||||||    
T  29510396 ggacaccggacacgacacggacactgacacgccgacacagctaataatttgaaaaaatcacaaaattcagtataattacaagtgtcggtgtagtgtcggt 29510297  T
Q  292 gtc 294  Q
    |||    
T  29510296 gtc 29510294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 190 - 280
Target Start/End: Complemental strand, 33405478 - 33405388
Alignment:
Q  190 acggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggt 280  Q
    ||||||||  |||||||||||||||||||||  ||| | | |||||||||||||||||| ||||||| |  || |||||||||||||||||    
T  33405478 acggacactggacacgacatggacactgacacactggccctgttaataatttgagaaaaacacataatttagtgtaattatatgtgtcggt 33405388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 190 - 295
Target Start/End: Complemental strand, 11927180 - 11927075
Alignment:
Q  190 acggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggtatcgtgtcg 289  Q
    |||||||||| |||||||| |||  || | | || ||||| ||||||||||||| |||| ||||||| || || ||||||||||||||||| |||||| |    
T  11927180 acggacaccaaacacgacacggatgctaatacgccgacactgttaataatttgataaaatcacataattcagtgtaattatatgtgtcggtgtcgtgttg 11927081  T
Q  290 gtgtca 295  Q
    ||||||    
T  11927080 gtgtca 11927075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 190 - 287
Target Start/End: Original strand, 11944630 - 11944727
Alignment:
Q  190 acggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggtatcgtgt 287  Q
    |||||||||| |||||||| |||  || ||| || ||||| ||||||||||||| |||| ||||||| || || ||||||||||||||||| ||||||    
T  11944630 acggacaccaaacacgacacggatgctaacacgccgacactgttaataatttgataaaatcacataactcagtgtaattatatgtgtcggtgtcgtgt 11944727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 182 - 297
Target Start/End: Complemental strand, 28385096 - 28384981
Alignment:
Q  182 atacgaacacggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggta 281  Q
    ||||||||||||| ||   |||||||| |||||||||||| | ||||| ||||||||| |||  ||| | ||||| || || |||||||||||||||||     
T  28385096 atacgaacacggatactgaacacgacacggacactgacataccgacaccgttaataatatgaataaatctcataattcagtgtaattatatgtgtcggtg 28384997  T
Q  282 tcgtgtcggtgtcaga 297  Q
    || |||| ||||||||    
T  28384996 tcatgtcagtgtcaga 28384981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 172 - 294
Target Start/End: Complemental strand, 24362314 - 24362192
Alignment:
Q  172 tgaaacacatatacgaacacggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattata 271  Q
    |||| |||| ||||| | ||||||||| || ||||||  ||||| |||| || ||||| | ||||||||||||| || ||||||| || || ||||||||    
T  24362314 tgaagcacagatacggatacggacaccggatacgacacagacaccgacacgccgacaccgctaataatttgagagaatcacataattcagtgtaattata 24362215  T
Q  272 tgtgtcggtatcgtgtcggtgtc 294  Q
    ||||||  | |||||||||||||    
T  24362214 tgtgtcaatgtcgtgtcggtgtc 24362192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 188 - 278
Target Start/End: Original strand, 44067479 - 44067569
Alignment:
Q  188 acacggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcg 278  Q
    ||||||||||||||||| |||  |||||||||| || ||||||| ||||||||||||||||  ||||||  | || |||||||| ||||||    
T  44067479 acacggacaccagacaccacaccgacactgacacgccgacacggataataatttgagaaaatgacataatacagtgtaattataagtgtcg 44067569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 293
Target Start/End: Original strand, 11803222 - 11803327
Alignment:
Q  188 acacggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggtatcgtgt 287  Q
    ||||| |||||| |||||||| | ||||||| |  ||||||| ||||||||||| |||||| ||||||| || || ||||||||||||| ||| | ||||    
T  11803222 acacgaacaccaaacacgacacgaacactgatacactgacactgttaataatttaagaaaatcacataattcagtgtaattatatgtgttggtgttgtgt 11803321  T
Q  288 cggtgt 293  Q
     |||||    
T  11803322 tggtgt 11803327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 182 - 270
Target Start/End: Complemental strand, 37283912 - 37283824
Alignment:
Q  182 atacgaacacggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattat 270  Q
    ||||| ||| |||||||||||| |||| |||||||||||||| | ||| | ||||||| |||||||| ||||||| || || |||||||    
T  37283912 atacgtacatggacaccagacatgacacggacactgacatgcgggcaccgctaataatctgagaaaatcacataattcagtgtaattat 37283824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 223 - 319
Target Start/End: Original strand, 25566839 - 25566937
Alignment:
Q  223 ctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggtatcgtgtcggtgtc--agatacgcctaatccgaggagtgtc 319  Q
    ||||||| | ||||||||||| |||| ||||||| || || |||||| | |||||||| |||||| ||||||   || |||||||||||||||||||||    
T  25566839 ctgacacagctaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcgtgttggtgtccgggacacgcctaatccgaggagtgtc 25566937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 248
Target Start/End: Complemental strand, 926890 - 926824
Alignment:
Q  182 atacgaacacggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaa 248  Q
    ||||||||||||||||| ||||||||| ||||||||||| ||  ||||   ||||||||||||||||    
T  926890 atacgaacacggacaccggacacgacacggacactgacacgccaacactcctaataatttgagaaaa 926824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 192 - 294
Target Start/End: Complemental strand, 13437056 - 13436954
Alignment:
Q  192 ggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggtatcgtgtcggt 291  Q
    ||||||| |||| |||||||||||||||| || ||||| | ||||||||||| |||| ||||||| ||    |||| | | |||||||| ||||||||||    
T  13437056 ggacaccggacatgacatggacactgacacgccgacacagctaataatttgaaaaaatcacataattcatggtaataacaagtgtcggtgtcgtgtcggt 13436957  T
Q  292 gtc 294  Q
    |||    
T  13436956 gtc 13436954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 211 - 280
Target Start/End: Complemental strand, 4786411 - 4786342
Alignment:
Q  211 gacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggt 280  Q
    |||||||||| || |||||  |||||||||| |||||| ||||||| || || |||||||||||||||||    
T  4786411 gacactgacacgccgacaccattaataatttaagaaaatcacataattcagtgtaattatatgtgtcggt 4786342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 280
Target Start/End: Original strand, 24669408 - 24669488
Alignment:
Q  200 gacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggt 280  Q
    |||||||||  |||||||||| |||||||| |||||||||||||| |||  |||||| || || |||||| | ||||||||    
T  24669408 gacacgacacagacactgacacgctgacaccgttaataatttgaggaaattacataattcagtgtaattacaagtgtcggt 24669488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 280
Target Start/End: Complemental strand, 25192447 - 25192351
Alignment:
Q  184 acgaacacggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggt 280  Q
    ||||| ||||||| | ||||||| | ||||||||||| || ||||| | ||||||||||| |||   |||||| || ||||||||||| ||||||||    
T  25192447 acgaatacggacatcggacacgatacggacactgacacgccgacacagctaataatttgaaaaagtgacataattcagtataattataagtgtcggt 25192351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 177 - 220
Target Start/End: Original strand, 18964123 - 18964166
Alignment:
Q  177 cacatatacgaacacggacaccagacacgacatggacactgaca 220  Q
    |||| ||||| ||||||||||||||||||||| |||||||||||    
T  18964123 cacagatacggacacggacaccagacacgacacggacactgaca 18964166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 190 - 269
Target Start/End: Original strand, 31556962 - 31557040
Alignment:
Q  190 acggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataatta 269  Q
    ||||||||| |||| ||||||| |||||||| || ||||| ||||||||||||| |||| ||||||| || || ||||||    
T  31556962 acggacaccggacatgacatggtcactgacacgccgacacagttaataatttga-aaaatcacataattcagtgtaatta 31557040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 280
Target Start/End: Complemental strand, 13844669 - 13844600
Alignment:
Q  211 gacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggt 280  Q
    ||||| |||| || ||||| | |||||||||||||||| ||||||| |  || |||||||||||||||||    
T  13844669 gacacggacacgccgacactgctaataatttgagaaaatcacataattgagtgtaattatatgtgtcggt 13844600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 278
Target Start/End: Original strand, 34897093 - 34897138
Alignment:
Q  233 taataatttgagaaaaccacataagtcggtataattatatgtgtcg 278  Q
    |||||||||||||||| ||||||| || || |||||||||||||||    
T  34897093 taataatttgagaaaatcacataattcagtgtaattatatgtgtcg 34897138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 294
Target Start/End: Complemental strand, 15816203 - 15816119
Alignment:
Q  210 ggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggtatcgtgtcggtgtc 294  Q
    ||||||||||| || |||||   ||||||||||| |||| ||||||| |  || |||||||| |||||||| |||||| ||||||    
T  15816203 ggacactgacacgccgacacaactaataatttgaaaaaatcacataatttagtgtaattataagtgtcggtgtcgtgttggtgtc 15816119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 274
Target Start/End: Original strand, 29776013 - 29776085
Alignment:
Q  202 cacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgt 274  Q
    ||||||| ||||| ||||| |  ||||| | |||||||||||||||| ||| ||| || ||||||||||||||    
T  29776013 cacgacacggacattgacaagtcgacactgctaataatttgagaaaatcacgtaattcagtataattatatgt 29776085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 277
Target Start/End: Complemental strand, 31109597 - 31109525
Alignment:
Q  205 gacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtc 277  Q
    |||| ||||||||||| || ||||| |||||||||||||||||| || | || || || ||| ||||||||||    
T  31109597 gacacggacactgacacgccgacaccgttaataatttgagaaaatcaaacaattcagtctaactatatgtgtc 31109525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 217 - 293
Target Start/End: Complemental strand, 44592 - 44516
Alignment:
Q  217 gacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggtatcgtgtcggtgt 293  Q
    |||| |||||||| | ||| |||||||||||| ||||||| || || ||||||||||||||||||||||||||||||    
T  44592 gacaagctgacaccgctaaaaatttgagaaaatcacataattcagtgtaattatatgtgtcggtatcgtgtcggtgt 44516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 172 - 280
Target Start/End: Complemental strand, 23293098 - 23292990
Alignment:
Q  172 tgaaacacatatacgaacacggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattata 271  Q
    |||| |||| ||||| ||||||||||| ||||||||| ||||| ||||| || ||||| | ||||||||||| |||| ||||||| || ||||||||| |    
T  23293098 tgaagcacagatacggacacggacaccggacacgacacggacaatgacacgccgacacagctaataatttgaaaaaatcacataattcagtataattaca 23292999  T
Q  272 tgtgtcggt 280  Q
     ||||||||    
T  23292998 agtgtcggt 23292990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 182 - 291
Target Start/End: Original strand, 19482625 - 19482734
Alignment:
Q  182 atacgaacacggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggta 281  Q
    |||||||||| ||||||||||||||||  |||||||||| || |||||   ||||||||||| || | ||||||| ||||| |||||| | |||| |||     
T  19482625 atacgaacacagacaccagacacgacacagacactgacacgccgacacaactaataatttgaaaatatcacataattcggtgtaattacaagtgttggtg 19482724  T
Q  282 tcgtgtcggt 291  Q
    ||||||||||    
T  19482725 tcgtgtcggt 19482734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 189 - 248
Target Start/End: Complemental strand, 16402306 - 16402247
Alignment:
Q  189 cacggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaa 248  Q
    ||||||||||  |||||||||| |||||||||||| ||||||| ||||||||||||||||    
T  16402306 cacggacaccgcacacgacatgaacactgacatgccgacacggataataatttgagaaaa 16402247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 188 - 278
Target Start/End: Original strand, 24343470 - 24343560
Alignment:
Q  188 acacggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcg 278  Q
    ||||||||||| ||||||||| |||| | |||| || ||||||| ||||||||||||||||  |||||| || || |||||||| ||||||    
T  24343470 acacggacaccggacacgacacggacgccgacacgccgacacggataataatttgagaaaattacataattcagtgtaattataggtgtcg 24343560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 198 - 275
Target Start/End: Complemental strand, 22440686 - 22440609
Alignment:
Q  198 cagacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtg 275  Q
    ||||||||||||||||||||| |    ||||| |||||||||||||||||| ||||||| || || ||||||||||||    
T  22440686 cagacacgacatggacactgatacatcgacaccgttaataatttgagaaaatcacataattcagtgtaattatatgtg 22440609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 297
Target Start/End: Complemental strand, 30982977 - 30982865
Alignment:
Q  182 atacgaacacggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggta 281  Q
    ||||||||| ||||||| || |||||| |||||| |||| ||   ||| | |||| ||||||||||| ||||||  || || |||||||| ||||||||     
T  30982977 atacgaacatggacaccggatacgacacggacacagacacgc---caccgctaatgatttgagaaaatcacatatttcagtgtaattataagtgtcggtg 30982881  T
Q  282 tcgtgtcggtgtcaga 297  Q
    ||||||||||||||||    
T  30982880 tcgtgtcggtgtcaga 30982865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 210 - 293
Target Start/End: Original strand, 903907 - 903990
Alignment:
Q  210 ggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggtatcgtgtcggtgt 293  Q
    |||||||||||  | | ||| |||||||||||||||||| ||||||| || || ||||||||||| || ||||||| |||||||    
T  903907 ggacactgacacaccggcaccgttaataatttgagaaaatcacataattcagtgtaattatatgtatcagtatcgtatcggtgt 903990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 200 - 318
Target Start/End: Complemental strand, 14126195 - 14126076
Alignment:
Q  200 gacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtc-ggtatcgtgtcggtgtcagat 298  Q
    |||||||||  |||||| ||| || ||||| ||||||||||||| |||  ||||||| || || |||||||| |||||  || ||||||| ||||| ||     
T  14126195 gacacgacacagacactaacacgccgacactgttaataatttgataaagtcacataattcagtgtaattataagtgtcatgtctcgtgtccgtgtcggac 14126096  T
Q  299 acgcctaatccgaggagtgt 318  Q
    ||||||||||||| ||||||    
T  14126095 acgcctaatccgaagagtgt 14126076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 233 - 320
Target Start/End: Complemental strand, 21658865 - 21658778
Alignment:
Q  233 taataatttgagaaaaccacataagtcggtataattatatgtgtcggtatcgtgtcggtgtcagatacgcctaatccgaggagtgtcc 320  Q
    |||||||||||||||| ||||||| |   ||||||| || |||||||| || |||| ||||| || ||| ||||||||||||||||||    
T  21658865 taataatttgagaaaatcacataatttactataattttaagtgtcggtttcatgtcagtgtcggacacgtctaatccgaggagtgtcc 21658778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 256
Target Start/End: Complemental strand, 20521951 - 20521877
Alignment:
Q  182 atacgaacacggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataa 256  Q
    ||||| ||| ||||||||||||||||| ||||||||||| || || || | ||||||||||| |||| |||||||    
T  20521951 atacgtacatggacaccagacacgacacggacactgacacgccgataccgataataatttgataaaatcacataa 20521877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 256
Target Start/End: Complemental strand, 27706279 - 27706205
Alignment:
Q  182 atacgaacacggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataa 256  Q
    ||||| ||||||||||||||||||||| ||||||||||| |  |||||  |||||||||| | |||| |||||||    
T  27706279 atacggacacggacaccagacacgacagggacactgacacgtcgacacaattaataatttaaaaaaatcacataa 27706205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 233 - 290
Target Start/End: Complemental strand, 15659811 - 15659754
Alignment:
Q  233 taataatttgagaaaaccacataagtcggtataattatatgtgtcggtatcgtgtcgg 290  Q
    |||||||||||||||| | ||||| ||||| ||||||||||||| ||| |||||||||    
T  15659811 taataatttgagaaaatctcataattcggtgtaattatatgtgttggtgtcgtgtcgg 15659754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 276
Target Start/End: Original strand, 36635287 - 36635375
Alignment:
Q  188 acacggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgt 276  Q
    |||| |||||| ||||||||  ||||||||||| ||  ||||   |||||||||||||||| ||||||| || || |||||||||||||    
T  36635287 acacagacaccggacacgactcggacactgacacgccaacaccactaataatttgagaaaatcacataattcagtgtaattatatgtgt 36635375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 182 - 249
Target Start/End: Original strand, 20633442 - 20633509
Alignment:
Q  182 atacgaacacggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaac 249  Q
    ||||| ||||||||||||||||||| | ||||||||||| |  ||||| | ||||||||||| |||||    
T  20633442 atacggacacggacaccagacacgatacggacactgacacgtcgacaccgctaataatttgaaaaaac 20633509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 189 - 280
Target Start/End: Original strand, 21945467 - 21945558
Alignment:
Q  189 cacggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggt 280  Q
    |||||||||| |||| ||||  ||||||||||||| ||||| | ||||||||||| ||||  |||||| || || |||||| | ||||||||    
T  21945467 cacggacaccggacatgacacagacactgacatgccgacacagctaataatttgaaaaaatgacataattcagtgtaattacaagtgtcggt 21945558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 200 - 294
Target Start/End: Complemental strand, 35723468 - 35723374
Alignment:
Q  200 gacacgacatggacactgacatgctgacacggttaataatttgagaaaa-ccacataagtcggtataattatatgtgtcggtatcgtgtcggtgtc 294  Q
    ||||||||||| ||||||||| || ||||| | ||||||||||||||||  ||||||| ||  | |||||||||||||| || |||| ||||||||    
T  35723468 gacacgacatg-acactgacacgccgacaccgctaataatttgagaaaatacacataattcaatgtaattatatgtgtcagtgtcgtatcggtgtc 35723374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 280
Target Start/End: Original strand, 9996849 - 9996895
Alignment:
Q  234 aataatttgagaaaaccacataagtcggtataattatatgtgtcggt 280  Q
    ||||||||||||||| ||||||| || |||||||||||||| |||||    
T  9996849 aataatttgagaaaatcacataattcagtataattatatgtctcggt 9996895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 289
Target Start/End: Complemental strand, 18576086 - 18576032
Alignment:
Q  235 ataatttgagaaaaccacataagtcggtataattatatgtgtcggtatcgtgtcg 289  Q
    |||||||||||||| ||||||| ||||| ||||||||||||| ||| || |||||    
T  18576086 ataatttgagaaaatcacataattcggtgtaattatatgtgttggtgtcatgtcg 18576032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 297
Target Start/End: Original strand, 40742569 - 40742663
Alignment:
Q  203 acgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggtatcgtgtcggtgtcaga 297  Q
    |||||| ||||| ||| | || |||||  ||||||||||||||||| || ||||    || ||||||||||||||| | ||||||||||||||||    
T  40742569 acgacacggacattgaaacgccgacaccattaataatttgagaaaatcatataatctagtgtaattatatgtgtcgatgtcgtgtcggtgtcaga 40742663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 289
Target Start/End: Complemental strand, 5775410 - 5775353
Alignment:
Q  232 ttaataatttgagaaaaccacataagtcggtataattatatgtgtcggtatcgtgtcg 289  Q
    ||||||||||||||||| ||||||| |  || ||||||||||||||||| || |||||    
T  5775410 ttaataatttgagaaaatcacataattaagtgtaattatatgtgtcggtgtcatgtcg 5775353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 280
Target Start/End: Complemental strand, 12895386 - 12895278
Alignment:
Q  172 tgaaacacatatacgaacacggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattata 271  Q
    ||||||||| ||||| | ||||||||| || |||||| | ||| ||||| || |||||   ||||||||||| |||| ||||||| |  || ||||||||    
T  12895386 tgaaacacagatacggatacggacaccggatacgacacgaacaatgacacgccgacacaaataataatttgaaaaaatcacataattttgtgtaattata 12895287  T
Q  272 tgtgtcggt 280  Q
     ||||||||    
T  12895286 agtgtcggt 12895278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 219
Target Start/End: Original strand, 13483995 - 13484027
Alignment:
Q  187 aacacggacaccagacacgacatggacactgac 219  Q
    |||||||||||| ||||||||||||||||||||    
T  13483995 aacacggacaccggacacgacatggacactgac 13484027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 190 - 316
Target Start/End: Original strand, 20137 - 20261
Alignment:
Q  190 acggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggtatcgtgtcg 289  Q
    ||||||||| ||||||||| ||||| ||||| || ||||| | ||||||||||| |||| ||||||| || || |||||| | ||||| || ||||||||    
T  20137 acggacaccggacacgacacggacaatgacacgccgacacagctaataatttgaaaaaatcacataattcagtgtaattacaagtgtcagtgtcgtgtcg 20236  T
Q  290 gtgtcagatacgcctaatccgaggagt 316  Q
    |||   || ||||||||||||||||||    
T  20237 gtg--ggacacgcctaatccgaggagt 20261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 188 - 278
Target Start/End: Complemental strand, 24205137 - 24205047
Alignment:
Q  188 acacggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcg 278  Q
    ||||||||||| ||||||||| ||||||||||| || ||||||| ||||||||||||||||  ||||||  | || |||||||| ||||||    
T  24205137 acacggacaccggacacgacacggacactgacacgccgacacggataataatttgagaaaatgacataatacagtgtaattataagtgtcg 24205047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 172 - 297
Target Start/End: Original strand, 28678250 - 28678375
Alignment:
Q  172 tgaaacacatatacgaacacggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattata 271  Q
    |||| |||| ||||| ||||  |||| | ||||||||| ||||||||||||| ||| | | ||||||||| | |||| ||||||| |  |||||||| ||    
T  28678250 tgaagcacaaatacggacacaaacactaaacacgacatagacactgacatgccgacgctgctaataatttaataaaatcacataatttagtataattgta 28678349  T
Q  272 tgtgtcggtatcgtgtcggtgtcaga 297  Q
    ||||||||| |||||| |||||||||    
T  28678350 tgtgtcggtgtcgtgttggtgtcaga 28678375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 211 - 322
Target Start/End: Original strand, 15544679 - 15544794
Alignment:
Q  211 gacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataatta----tatgtgtcggtatcgtgtcggtgtcagatacgcctaa 306  Q
    |||||||||| | |||||| | ||||||||||| |||| ||||||| || |||||||||    | |||||||||||||| | | ||||||| |||||| |    
T  15544679 gacactgacacgttgacaccgctaataatttgataaaatcacataattctgtataattatgtgtgtgtgtcggtatcgtattgatgtcagacacgcctta 15544778  T
Q  307 tccgaggagtgtccgt 322  Q
    || |||||||||||||    
T  15544779 tctgaggagtgtccgt 15544794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 188 - 294
Target Start/End: Complemental strand, 15796390 - 15796284
Alignment:
Q  188 acacggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggtatcgtgt 287  Q
    ||||||||||| ||||||||| ||||| ||||| || ||||| ||||||||||||| |||| || |||| || || |||||| |  ||||||| ||||||    
T  15796390 acacggacaccggacacgacacggacaatgacacgccgacacagttaataatttgaaaaaatcatataattcagtgtaattacaattgtcggtgtcgtgt 15796291  T
Q  288 cggtgtc 294  Q
     ||||||    
T  15796290 aggtgtc 15796284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 182 - 280
Target Start/End: Original strand, 25093459 - 25093557
Alignment:
Q  182 atacgaacacggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggt 280  Q
    |||| ||||| |||||| |||||||||  |||||| ||| || ||||| |||||| ||||||||||| |||| || || || |||||||||||||||||    
T  25093459 atacaaacacagacaccggacacgacactgacactaacacgccgacactgttaatgatttgagaaaatcacacaattcagtgtaattatatgtgtcggt 25093557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 190 - 275
Target Start/End: Original strand, 14618746 - 14618831
Alignment:
Q  190 acggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtg 275  Q
    ||||||||||||||||||| || |||||| | ||||||||   ||||||||| |||||||||||||| || || |||| |||||||    
T  14618746 acggacaccagacacgacacgggcactgagacgctgacacccctaataatttaagaaaaccacataattcagtgtaataatatgtg 14618831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 205 - 290
Target Start/End: Complemental strand, 25948966 - 25948881
Alignment:
Q  205 gacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggtatcgtgtcgg 290  Q
    |||| |||||||||||||| || |||| ||||||||||| |||| ||||||| || || |||||||| |||| ||| |||||||||    
T  25948966 gacacggacactgacatgccgatacggctaataatttgaaaaaatcacataattcagtgtaattataagtgttggtgtcgtgtcgg 25948881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 188 - 280
Target Start/End: Original strand, 8383220 - 8383312
Alignment:
Q  188 acacggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggt 280  Q
    ||||||||||  ||||||||| ||||| ||||| || ||||| | |||||||||||||||| || |||| || || |||||||| ||||||||    
T  8383220 acacggacactggacacgacacggacattgacacgccgacaccgctaataatttgagaaaatcatataattcagtgtaattataagtgtcggt 8383312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 225 - 297
Target Start/End: Complemental strand, 16192809 - 16192737
Alignment:
Q  225 gacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggtatcgtgtcggtgtcaga 297  Q
    ||||| ||||||||||||||||||  |||||| || || ||||||||||||| | | ||||||||||||||||    
T  16192809 gacaccgttaataatttgagaaaataacataattcagtgtaattatatgtgttgatgtcgtgtcggtgtcaga 16192737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 211 - 294
Target Start/End: Original strand, 26290357 - 26290440
Alignment:
Q  211 gacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggtatcgtgtcggtgtc 294  Q
    |||||||||| || |||||  ||||||||||||||||| ||||||  ||||| |||||||||||||| || ||||  |||||||    
T  26290357 gacactgacacgccgacaccattaataatttgagaaaatcacatagttcggtttaattatatgtgtcagtgtcgttccggtgtc 26290440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 202 - 277
Target Start/End: Complemental strand, 32804622 - 32804547
Alignment:
Q  202 cacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtc 277  Q
    ||||||| || || |||||||| ||||| |||||||||||||||||| ||||||| |  || ||||||||||||||    
T  32804622 cacgacacgggcattgacatgccgacaccgttaataatttgagaaaatcacataatttagtgtaattatatgtgtc 32804547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 256
Target Start/End: Complemental strand, 10268588 - 10268514
Alignment:
Q  182 atacgaacacggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataa 256  Q
    ||||||||||||||| |    |||||||||||||||||| || ||||| ||||||||||||| |||| |||||||    
T  10268588 atacgaacacggacatcgattacgacatggacactgacacgccgacacagttaataatttgaaaaaatcacataa 10268514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 172 - 297
Target Start/End: Complemental strand, 4991079 - 4990954
Alignment:
Q  172 tgaaacacatatacgaacacggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattata 271  Q
    |||||||| |||||| |||||||||||  |||||||| ||| |||||||  | ||||| | ||||| ||||||||||  |||||| || || |||||| |    
T  4991079 tgaaacacgtatacggacacggacaccgaacacgacacggagactgacactccgacaccgctaatagtttgagaaaattacataattcagtgtaattaca 4990980  T
Q  272 tgtgtcggtatcgtgtcggtgtcaga 297  Q
     |||||||  |||||| ||| |||||    
T  4990979 agtgtcggcgtcgtgttggtatcaga 4990954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 233 - 294
Target Start/End: Complemental strand, 8039886 - 8039825
Alignment:
Q  233 taataatttgagaaaaccacataagtcggtataattatatgtgtcggtatcgtgtcggtgtc 294  Q
    ||||||||||||||||  | |||| || || ||||||||||||||||| |||||||||||||    
T  8039886 taataatttgagaaaattatataattcagtgtaattatatgtgtcggtgtcgtgtcggtgtc 8039825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 200 - 297
Target Start/End: Original strand, 9800015 - 9800112
Alignment:
Q  200 gacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggtatcgtgtcggtgtcaga 297  Q
    ||||||||| | ||||||||| || |||||   ||||||||||||||||  |||||| || || ||||| || |||||||| |||||||||| |||||    
T  9800015 gacacgacacgtacactgacacgccgacacctctaataatttgagaaaattacataattccgtgtaattgtaagtgtcggtgtcgtgtcggtatcaga 9800112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 182 - 243
Target Start/End: Complemental strand, 10335388 - 10335327
Alignment:
Q  182 atacgaacacggacaccagacacgacatggacactgacatgctgacacggttaataatttga 243  Q
    ||||||||||||||||| ||||||||| ||||||||||| || |||||   |||||||||||    
T  10335388 atacgaacacggacaccggacacgacacggacactgacacgccgacacaactaataatttga 10335327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 187 - 248
Target Start/End: Complemental strand, 25652128 - 25652067
Alignment:
Q  187 aacacggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaa 248  Q
    |||||| ||||||||||||||| ||||||| ||| ||  |||||| ||||||||||||||||    
T  25652128 aacacgaacaccagacacgacacggacactaacacgccaacacggataataatttgagaaaa 25652067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 189 - 286
Target Start/End: Original strand, 28917965 - 28918062
Alignment:
Q  189 cacggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggtatcgtg 286  Q
    |||||||||| ||||||||| ||| ||||||| || ||||  | ||||||||||| |||| ||||||| || || |||||| | |||||||| |||||    
T  28917965 cacggacaccggacacgacacggaaactgacacgccgacatagctaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcgtg 28918062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 278
Target Start/End: Complemental strand, 35994839 - 35994744
Alignment:
Q  182 atacgaacacggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcg 278  Q
    ||||| ||| ||||||| ||||||||||||||| ||||| || ||||| | ||||||||||| |||| ||||||| || || |||||| | ||||||    
T  35994839 atacggacatggacaccggacacgacatggacaatgacaagccgacacagctaataatttga-aaaatcacataattcagtgtaattacaagtgtcg 35994744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 225 - 280
Target Start/End: Complemental strand, 7614474 - 7614419
Alignment:
Q  225 gacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggt 280  Q
    ||||| ||||||||||| |||||| ||||||| || |||||||||||| |||||||    
T  7614474 gacacagttaataatttaagaaaatcacataattcagtataattatatatgtcggt 7614419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 225 - 280
Target Start/End: Complemental strand, 8789609 - 8789554
Alignment:
Q  225 gacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggt 280  Q
    ||||||| | |||||||||||||| ||||||| || || |||||||||||||||||    
T  8789609 gacacggcttataatttgagaaaatcacataattccgtgtaattatatgtgtcggt 8789554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 286
Target Start/End: Complemental strand, 21257046 - 21256984
Alignment:
Q  224 tgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggtatcgtg 286  Q
    |||||| | ||||||||||| |||| ||||||| || ||||||||| | ||||||||||||||    
T  21257046 tgacacagctaataatttgaaaaaatcacataattcagtataattacaagtgtcggtatcgtg 21256984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 189 - 291
Target Start/End: Complemental strand, 41961745 - 41961643
Alignment:
Q  189 cacggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggtatcgtgtc 288  Q
    |||||||||| |||||||||  |||||||||| || | |||   ||||||||||| || | ||||| | ||||| |||||| | |||||||| |||||||    
T  41961745 cacggacaccggacacgacacagacactgacacgccgtcacaactaataatttgaaaatatcacattattcggtgtaattacaagtgtcggtgtcgtgtc 41961646  T
Q  289 ggt 291  Q
    |||    
T  41961645 ggt 41961643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 290
Target Start/End: Complemental strand, 49651853 - 49651780
Alignment:
Q  217 gacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggtatcgtgtcgg 290  Q
    ||||||| ||||||| ||||||||||| |||| ||||||| ||  | |||||| | |||||||| |||||||||    
T  49651853 gacatgccgacacggctaataatttgaaaaaatcacataattcactgtaattacaagtgtcggtgtcgtgtcgg 49651780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 248
Target Start/End: Complemental strand, 2684410 - 2684350
Alignment:
Q  188 acacggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaa 248  Q
    ||||||||||||||||||||| ||||| ||| |||  | ||| | ||||||||||||||||    
T  2684410 acacggacaccagacacgacacggacattgaaatgtcggcaccgctaataatttgagaaaa 2684350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 248
Target Start/End: Complemental strand, 12674597 - 12674537
Alignment:
Q  188 acacggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaa 248  Q
    |||| |||||||||||||||| ||||| |||||  | ||||| | ||||||||||||||||    
T  12674597 acacagacaccagacacgacacggacattgacacaccgacactgctaataatttgagaaaa 12674537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 261 - 293
Target Start/End: Original strand, 13806272 - 13806304
Alignment:
Q  261 gtataattatatgtgtcggtatcgtgtcggtgt 293  Q
    |||||||||||||||||||| ||||||||||||    
T  13806272 gtataattatatgtgtcggtgtcgtgtcggtgt 13806304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 297
Target Start/End: Complemental strand, 23184123 - 23184059
Alignment:
Q  233 taataatttgagaaaaccacataagtcggtataattatatgtgtcggtatcgtgtcggtgtcaga 297  Q
    ||||||||||| |||| || |||| ||  | ||||||||||||| ||||| ||||||||||||||    
T  23184123 taataatttgacaaaatcatataattctatgtaattatatgtgttggtattgtgtcggtgtcaga 23184059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 262
Target Start/End: Original strand, 24633736 - 24633803
Alignment:
Q  194 acaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggt 262  Q
    |||||||||| |||| ||||| |||||||| |||||   |||||||||||||||| ||||||| |||||    
T  24633736 acaccagacatgacacggaca-tgacatgccgacaccactaataatttgagaaaatcacataattcggt 24633803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 278
Target Start/End: Complemental strand, 34307882 - 34307786
Alignment:
Q  182 atacgaacacggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcg 278  Q
    ||||| ||||| ||||| |||| ||||  |||||  ||| |||||||| | |||||||||||||||| ||||||  || || |||||||| ||||||    
T  34307882 atacggacacgaacaccggacatgacacagacacgaacacgctgacaccgctaataatttgagaaaatcacatatttcagtgtaattataagtgtcg 34307786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 280
Target Start/End: Original strand, 38731181 - 38731273
Alignment:
Q  188 acacggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggt 280  Q
    ||||||||| | ||||||||||| |||| ||||||  || || | ||||||||| | |||| ||||||| || || || ||||||||||||||    
T  38731181 acacggacaacggacacgacatgtacaccgacatgtcgataccgctaataattttaaaaaatcacataattcagtgtagttatatgtgtcggt 38731273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 188 - 297
Target Start/End: Original strand, 8629 - 8738
Alignment:
Q  188 acacggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggtatcgtgt 287  Q
    ||||||||||| ||||||||||||||||||||| |  |||||   |||||||||  ||||| ||||||  || ||||||||||| |||||||| ||||||    
T  8629 acacggacaccggacacgacatggacactgacacgtcgacacttctaataatttaggaaaatcacatagttcagtataattataagtgtcggtgtcgtgt 8728  T
Q  288 cggtgtcaga 297  Q
    |  |||||||    
T  8729 ctatgtcaga 8738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 184 - 248
Target Start/End: Complemental strand, 23354752 - 23354688
Alignment:
Q  184 acgaacacggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaa 248  Q
    ||||||||||||||| |||| |||| |||||| ||||||||||||| | ||||||||||||||||    
T  23354752 acgaacacggacaccggacatgacacggacaccgacatgctgacacagataataatttgagaaaa 23354688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 172 - 291
Target Start/End: Complemental strand, 34785094 - 34784975
Alignment:
Q  172 tgaaacacatatacgaacacggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattata 271  Q
    |||| |||| ||||| |||||||| |||||||||||| |||||||||||  | |||||   ||||  ||| |||||| ||||||| |  || ||||||||    
T  34785094 tgaagcacagatacggacacggaccccagacacgacacggacactgacacaccgacacaactaatttttttagaaaatcacataatttagtgtaattata 34784995  T
Q  272 tgtgtcggtatcgtgtcggt 291  Q
    ||||||||| ||||||||||    
T  34784994 tgtgtcggtgtcgtgtcggt 34784975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 182 - 276
Target Start/End: Original strand, 21616719 - 21616813
Alignment:
Q  182 atacgaacacggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgt 276  Q
    ||||| |||| |||||  ||||||||| |||||| |||| || ||||| | |||||||||||||||| ||||||| || || |||||||||||||    
T  21616719 atacggacacagacacatgacacgacacggacacggacacgccgacaccgctaataatttgagaaaatcacataattcagtgtaattatatgtgt 21616813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 188 - 280
Target Start/End: Original strand, 18276484 - 18276576
Alignment:
Q  188 acacggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggt 280  Q
    ||||||||||| ||||||| |  |||||||| |||| ||||| | |||||||||||||||| ||| ||| || || ||||||| |||||||||    
T  18276484 acacggacaccggacacgatacagacactgatatgccgacaccgctaataatttgagaaaatcacttaattcagtgtaattatgtgtgtcggt 18276576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 200 - 279
Target Start/End: Complemental strand, 30404934 - 30404855
Alignment:
Q  200 gacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcgg 279  Q
    |||| |||| ||||||||||| || ||||||||||||||||||| |||| ||||||| || || |||||| | |||||||    
T  30404934 gacatgacacggacactgacacgccgacacggttaataatttgaaaaaatcacataattcagtgtaattacaagtgtcgg 30404855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 226 - 289
Target Start/End: Complemental strand, 30527653 - 30527590
Alignment:
Q  226 acacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggtatcgtgtcg 289  Q
    |||| |||||||||||||||||| || |||| |  || ||||||||||||||||||||||||||    
T  30527653 acactgttaataatttgagaaaatcatataatttagtgtaattatatgtgtcggtatcgtgtcg 30527590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 211 - 274
Target Start/End: Complemental strand, 32199213 - 32199150
Alignment:
Q  211 gacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgt 274  Q
    ||||||||||||||| ||| ||||||||||||| |||| ||||||| |  ||||||||||||||    
T  32199213 gacactgacatgctgtcacagttaataatttgataaaatcacataattaagtataattatatgt 32199150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 198 - 280
Target Start/End: Complemental strand, 20242813 - 20242731
Alignment:
Q  198 cagacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggt 280  Q
    ||||||||||||||||||||||| || |||||   ||||  ||| |||||| ||||||| || || |||||||||||||||||    
T  20242813 cagacacgacatggacactgacacgccgacacaactaatttttttagaaaatcacataattcagtgtaattatatgtgtcggt 20242731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 270
Target Start/End: Original strand, 28412313 - 28412395
Alignment:
Q  188 acacggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattat 270  Q
    ||||||||||||||||||||| ||||||| ||| |   |||| ||||||||||||| |||| ||||||| || || |||||||    
T  28412313 acacggacaccagacacgacacggacactaacacgtcaacaccgttaataatttgataaaatcacataattcagtgtaattat 28412395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 294
Target Start/End: Original strand, 35056883 - 35056937
Alignment:
Q  240 ttgagaaaaccacataagtcggtataattatatgtgtcggtatcgtgtcggtgtc 294  Q
    |||||||||||| |||| || || ||||||||||||||||| |||||||||||||    
T  35056883 ttgagaaaaccatataattcagtgtaattatatgtgtcggtgtcgtgtcggtgtc 35056937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 223 - 293
Target Start/End: Original strand, 44860318 - 44860388
Alignment:
Q  223 ctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggtatcgtgtcggtgt 293  Q
    ||||||| | |||||||||||||||| | ||||| || || ||||||||||||||||| |||||| |||||    
T  44860318 ctgacaccgctaataatttgagaaaatcgcataattcagtgtaattatatgtgtcggtgtcgtgttggtgt 44860388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 277
Target Start/End: Original strand, 17776595 - 17776639
Alignment:
Q  233 taataatttgagaaaaccacataagtcggtataattatatgtgtc 277  Q
    ||||||||| ||||||||||||||||| || ||||||||||||||    
T  17776595 taataatttaagaaaaccacataagtcagtgtaattatatgtgtc 17776639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 280
Target Start/End: Original strand, 23718001 - 23718081
Alignment:
Q  200 gacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggt 280  Q
    |||| |||| |||||||||||  | ||||| | |||||||||||||||  ||||||| || || |||||||||||||||||    
T  23718001 gacatgacacggacactgacacaccgacaccgctaataatttgagaaagtcacataattcagtgtaattatatgtgtcggt 23718081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 280
Target Start/End: Original strand, 24105673 - 24105753
Alignment:
Q  200 gacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggt 280  Q
    |||| |||| |||||||||||  | ||||| | |||||||||||||||  ||||||| || || |||||||||||||||||    
T  24105673 gacatgacacggacactgacacaccgacaccgctaataatttgagaaagtcacataattcagtgtaattatatgtgtcggt 24105753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 186 - 281
Target Start/End: Original strand, 30470999 - 30471094
Alignment:
Q  186 gaacacggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggta 281  Q
    ||||||||||| |||||||||||  | ||||  || ||||| ||   ||||| |||||||||| ||||||| ||| | ||||||||||||||||||    
T  30470999 gaacacggacatcagacacgacacaggcactagcacgctgatactcctaatattttgagaaaatcacataattcgatgtaattatatgtgtcggta 30471094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 215 - 278
Target Start/End: Complemental strand, 37411313 - 37411250
Alignment:
Q  215 ctgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcg 278  Q
    ||||||||| ||||| | |||||||||||||||| ||||||| || || | |||||||||||||    
T  37411313 ctgacatgccgacaccgctaataatttgagaaaatcacataattcagtgtgattatatgtgtcg 37411250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 248
Target Start/End: Complemental strand, 23355089 - 23355031
Alignment:
Q  190 acggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaa 248  Q
    ||||||||  |||| |||| |||||| ||||||||||||| | ||||||||||||||||    
T  23355089 acggacacgggacatgacacggacaccgacatgctgacacagataataatttgagaaaa 23355031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 284 - 322
Target Start/End: Complemental strand, 34691816 - 34691778
Alignment:
Q  284 gtgtcggtgtcagatacgcctaatccgaggagtgtccgt 322  Q
    ||||||||||| || ||||||||||||||||||||||||    
T  34691816 gtgtcggtgtcggacacgcctaatccgaggagtgtccgt 34691778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 284 - 322
Target Start/End: Complemental strand, 34714228 - 34714190
Alignment:
Q  284 gtgtcggtgtcagatacgcctaatccgaggagtgtccgt 322  Q
    ||||||||||| || ||||||||||||||||||||||||    
T  34714228 gtgtcggtgtcggacacgcctaatccgaggagtgtccgt 34714190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 277
Target Start/End: Original strand, 35449500 - 35449565
Alignment:
Q  212 acactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtc 277  Q
    ||||||||| ||  |||| |||||||||||||||||| |||| || || || ||||||||||||||    
T  35449500 acactgacaagccaacactgttaataatttgagaaaatcacagaattcagtgtaattatatgtgtc 35449565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 294
Target Start/End: Complemental strand, 11223949 - 11223853
Alignment:
Q  198 cagacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggtatcgtgtcggtgtc 294  Q
    |||||| ||||||||||| |||| |||||||| | ||||| ||||| ||||  |||||| || || |||||| | |||||||| || ||| ||||||    
T  11223949 cagacatgacatggacacagacacgctgacacagctaatattttgaaaaaataacataattcagtgtaattacaagtgtcggtgtcatgtaggtgtc 11223853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 248
Target Start/End: Original strand, 15972836 - 15972896
Alignment:
Q  188 acacggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaa 248  Q
    |||| ||||||||| |||||| ||||||||||| || |||||  |||||||||||| ||||    
T  15972836 acacagacaccagatacgacacggacactgacacgccgacacaattaataatttgaaaaaa 15972896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 216
Target Start/End: Complemental strand, 18631511 - 18631467
Alignment:
Q  172 tgaaacacatatacgaacacggacaccagacacgacatggacact 216  Q
    |||| |||| ||||||||||||||||| ||||||||| |||||||    
T  18631511 tgaagcacagatacgaacacggacaccggacacgacacggacact 18631467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 248
Target Start/End: Complemental strand, 18841097 - 18841049
Alignment:
Q  200 gacacgacatggacactgacatgctgacacggttaataatttgagaaaa 248  Q
    ||||||||||||||||||||| ||||||||   ||||||||||| ||||    
T  18841097 gacacgacatggacactgacacgctgacacaactaataatttgaaaaaa 18841049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 284 - 320
Target Start/End: Complemental strand, 19536408 - 19536372
Alignment:
Q  284 gtgtcggtgtcagatacgcctaatccgaggagtgtcc 320  Q
    ||||||||||| || ||||||||||||||||||||||    
T  19536408 gtgtcggtgtcggacacgcctaatccgaggagtgtcc 19536372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 280
Target Start/End: Original strand, 31018557 - 31018645
Alignment:
Q  192 ggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggt 280  Q
    ||||||| || |||||||||||||||||| ||  |||| | ||||||||| |||||| ||||| | |  || |||||||| ||||||||    
T  31018557 ggacaccggatacgacatggacactgacacgccaacaccgctaataatttcagaaaatcacatgatttagtgtaattataggtgtcggt 31018645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 256
Target Start/End: Original strand, 31283995 - 31284079
Alignment:
Q  172 tgaaacacatatacgaacacggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataa 256  Q
    |||| |||| ||||| ||||||||||| ||||  ||| | ||||| ||| || ||||| | |||||||||||||||| |||||||    
T  31283995 tgaagcacagatacggacacggacaccggacataacacgtacacttacacgccgacactgctaataatttgagaaaatcacataa 31284079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 290
Target Start/End: Original strand, 41843466 - 41843506
Alignment:
Q  250 cacataagtcggtataattatatgtgtcggtatcgtgtcgg 290  Q
    ||||||| ||||||||||||||||||||||| | |||||||    
T  41843466 cacataattcggtataattatatgtgtcggtgttgtgtcgg 41843506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 295
Target Start/End: Original strand, 41942070 - 41942177
Alignment:
Q  190 acggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataat--tatatgtgtcggtatcgtgt 287  Q
    |||||| || || ||||||  |||||||||| || | ||| ||||| ||||||||||||  |||||| || |||||||  |||||| || |||||| |||    
T  41942070 acggacgcctgatacgacacagacactgacacgcagtcaccgttaaaaatttgagaaaattacataattcagtataattatatatgagttggtatcatgt 41942169  T
Q  288 cggtgtca 295  Q
    ||||||||    
T  41942170 cggtgtca 41942177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 182 - 280
Target Start/End: Original strand, 130439 - 130537
Alignment:
Q  182 atacgaacacggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggt 280  Q
    ||||| ||||||||||| ||||||||| ||||| ||||| || ||||| ||||||| ||||| |||| ||||||| || || |||||| | ||||||||    
T  130439 atacggacacggacaccggacacgacacggacaatgacaagccgacacagttaatagtttgaaaaaatcacataattcagtgtaattacaagtgtcggt 130537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 189 - 294
Target Start/End: Original strand, 241558 - 241663
Alignment:
Q  189 cacggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggtatcgtgtc 288  Q
    |||||||||| ||||||||| ||||||||||| || ||||| | ||||||||||  |||| ||||||| |  || |||||||  |||||||| ||||||     
T  241558 cacggacaccggacacgacacggacactgacacgccgacacagctaataatttggaaaaatcacataatttagtgtaattatgagtgtcggtgtcgtgtt 241657  T
Q  289 ggtgtc 294  Q
    ||||||    
T  241658 ggtgtc 241663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 233 - 297
Target Start/End: Complemental strand, 9798 - 9734
Alignment:
Q  233 taataatttgagaaaaccacataagtcggtataattatatgtgtcggtatcgtgtcggtgtcaga 297  Q
    |||||||||||||||| ||| ||| || || ||||||||||||||||| |||||| |||||||||    
T  9798 taataatttgagaaaatcacttaattcagtgtaattatatgtgtcggtgtcgtgttggtgtcaga 9734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 188 - 248
Target Start/End: Complemental strand, 225364 - 225304
Alignment:
Q  188 acacggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaa 248  Q
    ||||||||||| ||||||||| ||||||||||| || ||||| | ||||||||||||||||    
T  225364 acacggacaccggacacgacacggacactgacacgccgacacagataataatttgagaaaa 225304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 188 - 294
Target Start/End: Complemental strand, 3950 - 3839
Alignment:
Q  188 acacggacaccagacacgacatg-----gacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggtat 282  Q
    ||||||||||||||||||||| |     |||||||| |||| ||||||||||||||||| | |||| ||||||| || || |||||| | ||||| || |    
T  3950 acacggacaccagacacgacacgacacagacactgatatgccgacacggttaataatttaaaaaaatcacataattcagtgtaattacaagtgtcagtgt 3851  T
Q  283 cgtgtcggtgtc 294  Q
    ||||| ||||||    
T  3850 cgtgttggtgtc 3839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 182 - 269
Target Start/End: Original strand, 46639 - 46726
Alignment:
Q  182 atacgaacacggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataatta 269  Q
    ||||| ||||||||| | ||||||||| ||||| ||||| || ||||| ||||||||||||| |||| ||||||| || || ||||||    
T  46639 atacggacacggacatcggacacgacacggacaatgacacgccgacacagttaataatttgaaaaaatcacataattcagtgtaatta 46726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 233 - 288
Target Start/End: Complemental strand, 135363 - 135308
Alignment:
Q  233 taataatttgagaaaaccacataagtcggtataattatatgtgtcggtatcgtgtc 288  Q
    |||||||||||||||| ||||||| || || ||||||||||||||||| |||||||    
T  135363 taataatttgagaaaatcacataattctgtgtaattatatgtgtcggtgtcgtgtc 135308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 198 - 269
Target Start/End: Complemental strand, 192335 - 192264
Alignment:
Q  198 cagacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataatta 269  Q
    ||||||||| | ||||||||||| || ||||| ||||||||||||||||||  |||||| ||||| ||||||    
T  192335 cagacacgatacggacactgacacgccgacaccgttaataatttgagaaaattacataattcggtgtaatta 192264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 248
Target Start/End: Original strand, 8755 - 8821
Alignment:
Q  182 atacgaacacggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaa 248  Q
    ||||| ||||||||||| ||||||||| ||||||||||| || ||||| | ||||||||||| ||||    
T  8755 atacggacacggacaccggacacgacacggacactgacacgccgacacagctaataatttgaaaaaa 8821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0697 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0697
Description:

Target: scaffold0697; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 211 - 280
Target Start/End: Original strand, 1630 - 1699
Alignment:
Q  211 gacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggt 280  Q
    ||||| |||| || ||||| |||||||||||||||||| || |||| | |||||||||||| ||||||||    
T  1630 gacacagacacgccgacaccgttaataatttgagaaaatcatataatttggtataattataagtgtcggt 1699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 182 - 291
Target Start/End: Original strand, 9855 - 9964
Alignment:
Q  182 atacgaacacggacaccagacacgacatggacactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggta 281  Q
    ||||| ||||||||||| |||||||||||||||| |||| || ||||| | ||||  ||| |||||| || | ||  | || |||||||||||||||||     
T  9855 atacggacacggacaccggacacgacatggacaccgacacgccgacacagctaatttttttagaaaatcataaaatgcagtgtaattatatgtgtcggtg 9954  T
Q  282 tcgtgtcggt 291  Q
    ||| ||||||    
T  9955 tcgcgtcggt 9964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 294
Target Start/End: Original strand, 53189 - 53249
Alignment:
Q  234 aataatttgagaaaaccacataagtcggtataattatatgtgtcggtatcgtgtcggtgtc 294  Q
    ||||||||||||||| ||||||| || || |||||||| ||||||||  ||||||||||||    
T  53189 aataatttgagaaaatcacataattcagtgtaattataagtgtcggtgccgtgtcggtgtc 53249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0450 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0450
Description:

Target: scaffold0450; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 212 - 291
Target Start/End: Complemental strand, 8707 - 8628
Alignment:
Q  212 acactgacatgctgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggtatcgtgtcggt 291  Q
    |||||||||||| |||||   ||||||||||| || | ||||||| |||||||||||| |  ||||||| ||||||||||    
T  8707 acactgacatgccgacacaactaataatttgaaaatatcacataattcggtataattacaaatgtcggtgtcgtgtcggt 8628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0236 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 224 - 287
Target Start/End: Complemental strand, 25828 - 25765
Alignment:
Q  224 tgacacggttaataatttgagaaaaccacataagtcggtataattatatgtgtcggtatcgtgt 287  Q
    ||||||||||||||||| ||||||| ||||||| |  || |||||||| |||||||| ||||||    
T  25828 tgacacggttaataattagagaaaatcacataatttagtgtaattataagtgtcggtgtcgtgt 25765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0227 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 220
Target Start/End: Original strand, 15018 - 15050
Alignment:
Q  188 acacggacaccagacacgacatggacactgaca 220  Q
    ||||||||||||||||||||| |||||||||||    
T  15018 acacggacaccagacacgacacggacactgaca 15050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University