View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2638_low_1 (Length: 440)
Name: NF2638_low_1
Description: NF2638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2638_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 304; Significance: 1e-171; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 72 - 419
Target Start/End: Complemental strand, 380396 - 380046
Alignment:
| Q |
72 |
gataaccataagttaaatcatttgttgctaggaaagaaatacaaaaatgatgaccaagcttgcctcttttagcgtttgtgctcacgttcatcattgaagc |
171 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||| ||||||||||||||||||| |
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| T |
380396 |
gataaccatgagttaaatcatttgttgctaggaaagaaatacaaaaatgatgaccaaccttacctcttttagcatttgtgatcacgttcatcattgaagc |
380297 |
T |
|
| Q |
172 |
ttcttccacgcttgctgccaaccgcatcaagttcatcaatgaatatgattgacggtgaaatttccttgctgtactgaacaggtctctgattctagctgca |
271 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
380296 |
ttcttccacgcttgctgccaaccgcatcaagttcatcaatgaatatgattgacggtgaaatttccttgctgtactgaacaggtctctgattctagctgca |
380197 |
T |
|
| Q |
272 |
cctcttccaacaaacaattctacaaactcgttagcag--actgtg-aaaaagggtacacctgctccccccgctactgcacgcgcaagtaatgtcttgcca |
368 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
380196 |
cctcttccaacaaacaattctacaaactcgttagcagatactgtgaaaaaagggtacacctgctccccccgctactgcatgcgcaagtaatgtcttgcca |
380097 |
T |
|
| Q |
369 |
gttcctggaggaccgactagcaatactcctctgggtagctcgtcagatgta |
419 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
380096 |
gttcctggaggactgactagcaatactcctctgggtagctcgtcagatgta |
380046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 408
Target Start/End: Complemental strand, 6300446 - 6300039
Alignment:
| Q |
1 |
cagagatttgtattgatttaattcagtttagtatggaatcaagatatgtctcacatgcatcttaagatattgataaccataagttaaatcatttgttgct |
100 |
Q |
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|||||||| ||| |||| | |||||| |||||| |||| |||||| | ||| ||||||| || |||||||||||| || |||| ||| | |||||||| |
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| T |
6300446 |
cagagattcatatcgattgagttcagtatagtatcgaataaagatacgactcgcatgcattatatgatattgataactatgagttcaataaattgttgct |
6300347 |
T |
|
| Q |
101 |
aggaaagaaatacaaaaatgatgaccaagcttgcctcttttagcgtttgtgctcacgttcatcattgaagcttcttccacgcttgctgccaaccgcatca |
200 |
Q |
| |
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|| |||||||||||||| ||||||| || ||||||| ||||||||||| || ||||| |||||||||| |||||||||||||| |||||||||||| |
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| T |
6300346 |
agaaaagaaatacaaaa-tgatgactaaacttgcctgatttagcgtttgg--tcccgttcctcattgaagcctcttccacgcttgccaccaaccgcatca |
6300250 |
T |
|
| Q |
201 |
agttcatcaatgaatatgattgacggtg-aaatttccttgctgtactgaacaggtctctgattctagctgcacctcttccaacaaacaattctacaaact |
299 |
Q |
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||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
6300249 |
agttcatcaatgaatatgattgatggtgcaaatttccttgctctactgaacaggtctctgattctagctgcacctcttccaacaaacatttctacaaact |
6300150 |
T |
|
| Q |
300 |
cgttagcaga--ctgtgaaaaagggtacacctgctccccccgctactgcacgcgcaagtaatgtcttgccagttcctggaggaccgactagcaatactcc |
397 |
Q |
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| ||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
6300149 |
cactagcagatactgtgaaaaagggtacacctgcttcccccgctactgcacgtgcaagtaatgtcttgccagttcctggaggaccgactagcaacactcc |
6300050 |
T |
|
| Q |
398 |
tctgggtagct |
408 |
Q |
| |
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||||||||||| |
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| T |
6300049 |
tctgggtagct |
6300039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 408
Target Start/End: Complemental strand, 6307256 - 6306849
Alignment:
| Q |
1 |
cagagatttgtattgatttaattcagtttagtatggaatcaagatatgtctcacatgcatcttaagatattgataaccataagttaaatcatttgttgct |
100 |
Q |
| |
|
|||||||| ||| |||| | |||||| |||||| |||| |||||| | ||| ||||||| || |||||||||||| || |||| ||| | |||||||| |
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| T |
6307256 |
cagagattcatatcgattgagttcagtatagtatcgaataaagatacgactcgcatgcattatatgatattgataactatgagttcaataaattgttgct |
6307157 |
T |
|
| Q |
101 |
aggaaagaaatacaaaaatgatgaccaagcttgcctcttttagcgtttgtgctcacgttcatcattgaagcttcttccacgcttgctgccaaccgcatca |
200 |
Q |
| |
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|| |||||||||||||| ||||||| || ||||||| ||||||||||| || ||||| |||||||||| |||||||||||||| |||||||||||| |
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| T |
6307156 |
agaaaagaaatacaaaa-tgatgactaaacttgcctgatttagcgtttgg--tcccgttcctcattgaagcctcttccacgcttgccaccaaccgcatca |
6307060 |
T |
|
| Q |
201 |
agttcatcaatgaatatgattgacggtg-aaatttccttgctgtactgaacaggtctctgattctagctgcacctcttccaacaaacaattctacaaact |
299 |
Q |
| |
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||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
6307059 |
agttcatcaatgaatatgattgatggtgcaaatttccttgctctactgaacaggtctctgattctagctgcacctcttccaacaaacatttctacaaact |
6306960 |
T |
|
| Q |
300 |
cgttagcaga--ctgtgaaaaagggtacacctgctccccccgctactgcacgcgcaagtaatgtcttgccagttcctggaggaccgactagcaatactcc |
397 |
Q |
| |
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| ||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
6306959 |
cactagcagatactgtgaaaaagggtacacctgcttcccccgctactgcacgtgcaagtaatgtcttgccagttcctggaggaccgactagcaacactcc |
6306860 |
T |
|
| Q |
398 |
tctgggtagct |
408 |
Q |
| |
|
||||||||||| |
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|
| T |
6306859 |
tctgggtagct |
6306849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 382224 - 382140
Alignment:
| Q |
1 |
cagagatttgtattgatttaattcagtttagtatggaatcaagatatgtctcacatgcatcttaagatattgataaccataagtt |
85 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
382224 |
cagagatttgtattgatttaattcagtttagtatcgaatcaagatatgtctcacatgcatcttaagatattgataaccatgagtt |
382140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 80
Target Start/End: Complemental strand, 30035413 - 30035336
Alignment:
| Q |
3 |
gagatttgtattgatttaattcagtttagtatggaatcaagatatgtctcacatgcatcttaagatattgataaccat |
80 |
Q |
| |
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||||||||||| |||| |||||| || ||||| |||| ||||| | |||||||| ||| ||||||| |||||||||| |
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| T |
30035413 |
gagatttgtatcgattgaattcaattaagtattgaattgagatacgactcacatgtatcataagatactgataaccat |
30035336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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