View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2638_low_13 (Length: 250)

Name: NF2638_low_13
Description: NF2638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2638_low_13
NF2638_low_13
[»] chr6 (3 HSPs)
chr6 (1-232)||(31994758-31994997)
chr6 (183-237)||(9410202-9410256)
chr6 (206-243)||(28049290-28049327)
[»] chr2 (7 HSPs)
chr2 (4-173)||(20588272-20588441)
chr2 (4-176)||(20587116-20587288)
chr2 (170-242)||(20588168-20588240)
chr2 (170-232)||(20587314-20587376)
chr2 (9-158)||(13434901-13435050)
chr2 (196-241)||(31558271-31558316)
chr2 (170-232)||(13435100-13435163)
[»] chr5 (6 HSPs)
chr5 (4-176)||(42775497-42775669)
chr5 (1-176)||(37986309-37986484)
chr5 (4-173)||(42776631-42776800)
chr5 (170-232)||(42775695-42775757)
chr5 (170-229)||(42776540-42776599)
chr5 (204-241)||(12890565-12890602)
[»] scaffold0472 (4 HSPs)
scaffold0472 (26-176)||(10256-10406)
scaffold0472 (4-173)||(9097-9266)
scaffold0472 (170-242)||(9304-9376)
scaffold0472 (170-232)||(10168-10230)
[»] chr7 (14 HSPs)
chr7 (26-176)||(28848653-28848803)
chr7 (4-176)||(43546540-43546712)
chr7 (56-176)||(25008211-25008331)
chr7 (26-173)||(43545441-43545588)
chr7 (4-173)||(25009298-25009467)
chr7 (56-173)||(28849791-28849908)
chr7 (170-242)||(28849683-28849756)
chr7 (170-232)||(25008358-25008420)
chr7 (170-232)||(28848829-28848891)
chr7 (170-232)||(43546452-43546514)
chr7 (170-229)||(25009204-25009263)
chr7 (170-229)||(43545623-43545682)
chr7 (198-243)||(11670172-11670217)
chr7 (88-181)||(39787975-39788068)
[»] chr1 (8 HSPs)
chr1 (4-173)||(46651438-46651607)
chr1 (4-176)||(46652591-46652763)
chr1 (170-242)||(46651639-46651711)
chr1 (170-232)||(46652503-46652565)
chr1 (196-241)||(28361093-28361138)
chr1 (198-243)||(50315651-50315696)
chr1 (199-243)||(46604763-46604807)
chr1 (102-181)||(31034307-31034386)
[»] scaffold0018 (2 HSPs)
scaffold0018 (4-176)||(193668-193840)
scaffold0018 (170-232)||(193866-193928)
[»] chr4 (15 HSPs)
chr4 (4-176)||(39929164-39929336)
chr4 (26-173)||(39928032-39928179)
chr4 (1-176)||(5236319-5236484)
chr4 (56-174)||(46253104-46253222)
chr4 (170-242)||(39928212-39928284)
chr4 (170-232)||(39929076-39929138)
chr4 (26-175)||(13506824-13506972)
chr4 (182-240)||(5236520-5236578)
chr4 (170-224)||(46253251-46253305)
chr4 (121-175)||(5236898-5236952)
chr4 (196-241)||(4241359-4241404)
chr4 (170-232)||(5236812-5236872)
chr4 (196-241)||(4284084-4284129)
chr4 (205-241)||(33607799-33607835)
chr4 (199-243)||(33609032-33609076)
[»] scaffold0524 (5 HSPs)
scaffold0524 (4-173)||(8882-9051)
scaffold0524 (102-176)||(7853-7927)
scaffold0524 (170-232)||(7953-8015)
scaffold0524 (170-227)||(8796-8853)
scaffold0524 (4-77)||(7775-7848)
[»] chr3 (12 HSPs)
chr3 (4-173)||(8392616-8392785)
chr3 (4-160)||(45981484-45981640)
chr3 (56-175)||(8391520-8391639)
chr3 (56-173)||(45982622-45982739)
chr3 (170-242)||(8392514-8392586)
chr3 (170-232)||(8391666-8391728)
chr3 (170-232)||(45981682-45981744)
chr3 (196-241)||(33551905-33551950)
chr3 (170-229)||(45982528-45982587)
chr3 (198-243)||(41881337-41881382)
chr3 (198-243)||(44458937-44458982)
chr3 (196-236)||(32641400-32641440)
[»] chr8 (10 HSPs)
chr8 (4-162)||(35506752-35506910)
chr8 (3-180)||(35750675-35750841)
chr8 (4-173)||(35505599-35505768)
chr8 (1-95)||(35750193-35750287)
chr8 (176-242)||(35505810-35505876)
chr8 (170-232)||(35506652-35506714)
chr8 (196-235)||(35919295-35919334)
chr8 (170-232)||(35750340-35750406)
chr8 (199-243)||(45448180-45448224)
chr8 (186-232)||(35750591-35750637)
[»] scaffold0369 (2 HSPs)
scaffold0369 (56-173)||(8092-8210)
scaffold0369 (185-229)||(8004-8048)


Alignment Details
Target: chr6 (Bit Score: 154; Significance: 9e-82; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 31994758 - 31994997
Alignment:
Q  1 aaccatccttgtaatttgttaaccatttgcaattagtccctcccgttaacacccattacaaaaacgtagtggtggcagacaaagacacacgtggcgaagg 100  Q
    |||||||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| | ||||||||||||    
T  31994758 aaccatccttataagttgttaaccatttgcaattagtccctcccgttaacacccgttacaaaaatgtagtggtggcagacaaagaaagacgtggcgaagg 31994857  T
Q  101 ttgagttggcaaaagcaagcttatgtgtcaagagagatgatgagttgcttgaaaggaggga-------caaaaaccaaaaacgtaaattttgttcattcc 193  Q
     |||||||||||||||| ||||||||||||||| | ||||| ||||||||||||||||| |       ||||||||||||||||||||||||||||||||    
T  31994858 gtgagttggcaaaagcaggcttatgtgtcaagataaatgataagttgcttgaaaggaggaaccaaaatcaaaaaccaaaaacgtaaattttgttcattcc 31994957  T
Q  194 tttccctcta-ttttttcttcttcatctccaaccccaatt 232  Q
    | |||||||| |||||||||||||||||||||||||||||    
T  31994958 tctccctctatttttttcttcttcatctccaaccccaatt 31994997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 183 - 237
Target Start/End: Original strand, 9410202 - 9410256
Alignment:
Q  183 ttgttcattcctttccctctattttttcttcttcatctccaaccccaatttcttc 237  Q
    |||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||    
T  9410202 ttgttcatccctctccctctattttttcttcttcatctccaatcccaatttcttc 9410256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 206 - 243
Target Start/End: Original strand, 28049290 - 28049327
Alignment:
Q  206 ttttcttcttcatctccaaccccaatttcttcatctct 243  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  28049290 ttttcttcttcatcttcaaccccaatttcttcatctct 28049327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 94; Significance: 5e-46; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 4 - 173
Target Start/End: Complemental strand, 20588441 - 20588272
Alignment:
Q  4 catccttgtaatttgttaaccatttgcaattagtccctcccgttaacacccattacaaaaacgtagtggtggcagacaaagacacacgtggcgaaggttg 103  Q
    ||||||||||| |||  || | ||||||||| ||||||||||||||| ||| |||||||||||| ||||||||||||  |||||||||||| ||||  ||    
T  20588441 catccttgtaagttgccaatcgtttgcaattcgtccctcccgttaactcccgttacaaaaacgttgtggtggcagacgtagacacacgtggtgaagtgtg 20588342  T
Q  104 agttggcaaaagcaagcttatgtgtcaagagagatgatgagttgcttgaaaggagggacaaaaaccaaaa 173  Q
    |||||||||||||  ||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||    
T  20588341 agttggcaaaagcttgcttatgtgtcaagagagatgatgagtggctagaaaggagggaccaaaaccaaaa 20588272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 4 - 176
Target Start/End: Original strand, 20587116 - 20587288
Alignment:
Q  4 catccttgtaatttgttaaccatttgcaattagtccctcccgttaacacccattacaaaaacgtagtggtggcagacaaagacacacgtggcgaaggttg 103  Q
    ||||||||||| ||  || || ||||||||| |||||||| |||||| ||| |||||||||||| ||||||||||||  ||||||||| |||||||  ||    
T  20587116 catccttgtaagttactagccgtttgcaattcgtccctcctgttaactcccgttacaaaaacgttgtggtggcagacggagacacacgcggcgaagtgtg 20587215  T
Q  104 agttggcaaaagcaagcttatgtgtcaagagagatgatgagttgcttgaaaggagggacaaaaaccaaaaacg 176  Q
    |||||||||||||  ||||||||||||||||||||||||||| | | ||||||||||||||||||||| ||||    
T  20587216 agttggcaaaagcttgcttatgtgtcaagagagatgatgagtggttagaaaggagggacaaaaaccaataacg 20587288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 170 - 242
Target Start/End: Complemental strand, 20588240 - 20588168
Alignment:
Q  170 aaaaacgtaaattttgttcattcctttccctctattttttcttcttcatctccaaccccaatttcttcatctc 242  Q
    ||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  20588240 aaaaaagtaaatttagttcattcctctccctctattttttcttcttcatctccaaccccaatttcttcatctc 20588168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 170 - 232
Target Start/End: Original strand, 20587314 - 20587376
Alignment:
Q  170 aaaaacgtaaattttgttcattcctttccctctattttttcttcttcatctccaaccccaatt 232  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  20587314 aaaaacgtacattttgttcattcctctccctctattttttcttcttcatctccaaccccaatt 20587376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 9 - 158
Target Start/End: Original strand, 13434901 - 13435050
Alignment:
Q  9 ttgtaatttgttaaccatttgcaattagtccctcccgttaacacccattacaaaaacgtagtggtggcagacaaagacacacgtggcgaaggttgagttg 108  Q
    |||||| ||| ||||| |||| ||||| |  || |||||||| || ||||||||||||| ||||| | ||||| ||| |||  || |||||| |||||||    
T  13434901 ttgtaagttgctaaccgtttgtaattattatcttccgttaactcctattacaaaaacgttgtggtcgtagacatagagacatatgacgaagggtgagttg 13435000  T
Q  109 gcaaaagcaagcttatgtgtcaagagagatgatgagttgcttgaaaggag 158  Q
    ||||||||| | ||||||||||||||| ||||||||  ||| ||||||||    
T  13435001 gcaaaagcatgtttatgtgtcaagagaaatgatgagcggctagaaaggag 13435050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 196 - 241
Target Start/End: Original strand, 31558271 - 31558316
Alignment:
Q  196 tccctctattttttcttcttcatctccaaccccaatttcttcatct 241  Q
    |||||||||||||||||||||||||||||| |||||||||||||||    
T  31558271 tccctctattttttcttcttcatctccaactccaatttcttcatct 31558316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 170 - 232
Target Start/End: Original strand, 13435100 - 13435163
Alignment:
Q  170 aaaaacgtaaattttgttcattcctttccctctattttttctt-cttcatctccaaccccaatt 232  Q
    |||||| |||||||||||||||| | ||||||| |||||| || ||||||||||||||||||||    
T  13435100 aaaaacataaattttgttcattcatctccctctgttttttttttcttcatctccaaccccaatt 13435163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 93; Significance: 2e-45; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 4 - 176
Target Start/End: Original strand, 42775497 - 42775669
Alignment:
Q  4 catccttgtaatttgttaaccatttgcaattagtccctcccgttaacacccattacaaaaacgtagtggtggcagacaaagacacacgtggcgaaggttg 103  Q
    ||||||||||| ||  || || ||||||||| ||||||||||||||| ||| |||||||||||| ||||||||||||  ||||||||| |||||||  ||    
T  42775497 catccttgtaagttactagccgtttgcaattcgtccctcccgttaactcccgttacaaaaacgttgtggtggcagacggagacacacgcggcgaagtgtg 42775596  T
Q  104 agttggcaaaagcaagcttatgtgtcaagagagatgatgagttgcttgaaaggagggacaaaaaccaaaaacg 176  Q
    |||||||||||||  ||||||||||||||||||||||||||| | | |||||||||||| |||||||||||||    
T  42775597 agttggcaaaagcttgcttatgtgtcaagagagatgatgagtggttagaaaggagggaccaaaaccaaaaacg 42775669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 37986484 - 37986309
Alignment:
Q  1 aaccatccttgtaatttgttaaccatttgcaattagtccctcccgttaacacccattacaaaaacgtagtggtggcagacaaagacacacgtggcgaagg 100  Q
    ||||||| |||||| ||||||||  |||||||| |||||||||  ||||| |||  ||||||||||| ||||||||||||| |||||||| |||||||||    
T  37986484 aaccatcattgtaagttgttaactgtttgcaatcagtccctccacttaactcccgctacaaaaacgttgtggtggcagacagagacacacatggcgaagg 37986385  T
Q  101 ttgagttggcaaaagcaagcttatgtgtcaagagagatgatgagttgcttgaaaggagggacaaaaaccaaaaacg 176  Q
     ||||||| ||||| || |||||| |||||||||||||||||||| ||| |||||||||||| | |||||||||||    
T  37986384 gtgagttgacaaaaacaggcttatatgtcaagagagatgatgagtggctagaaaggagggaccagaaccaaaaacg 37986309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 4 - 173
Target Start/End: Complemental strand, 42776800 - 42776631
Alignment:
Q  4 catccttgtaatttgttaaccatttgcaattagtccctcccgttaacacccattacaaaaacgtagtggtggcagacaaagacacacgtggcgaaggttg 103  Q
    ||||||||||| |||  || | |||||||||  |||||||||||||| ||  |||||||||||| |||||||| |||  ||||| || ||| ||||  ||    
T  42776800 catccttgtaagttgccaatcgtttgcaattcatccctcccgttaactcctgttacaaaaacgttgtggtggcggacggagacatacatggtgaagtctg 42776701  T
Q  104 agttggcaaaagcaagcttatgtgtcaagagagatgatgagttgcttgaaaggagggacaaaaaccaaaa 173  Q
    |||||||||||||  ||||||||||||||||||||||||||| ||| |||||||| ||| ||||||||||    
T  42776700 agttggcaaaagcttgcttatgtgtcaagagagatgatgagtggctagaaaggagagaccaaaaccaaaa 42776631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 170 - 232
Target Start/End: Original strand, 42775695 - 42775757
Alignment:
Q  170 aaaaacgtaaattttgttcattcctttccctctattttttcttcttcatctccaaccccaatt 232  Q
    |||||| || ||||||||||||||| ||||||||||||||||||||||| |||||||||||||    
T  42775695 aaaaacatacattttgttcattcctctccctctattttttcttcttcatatccaaccccaatt 42775757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 170 - 229
Target Start/End: Complemental strand, 42776599 - 42776540
Alignment:
Q  170 aaaaacgtaaattttgttcattcctttccctctattttttcttcttcatctccaacccca 229  Q
    ||||| |||||||| |||||||||| ||||| || |||||||||||||||||||||||||    
T  42776599 aaaaaagtaaatttagttcattcctctccctttactttttcttcttcatctccaacccca 42776540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 204 - 241
Target Start/End: Original strand, 12890565 - 12890602
Alignment:
Q  204 ttttttcttcttcatctccaaccccaatttcttcatct 241  Q
    ||||||||||||||||||||||||||||||||||||||    
T  12890565 ttttttcttcttcatctccaaccccaatttcttcatct 12890602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472 (Bit Score: 91; Significance: 3e-44; HSPs: 4)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 26 - 176
Target Start/End: Complemental strand, 10406 - 10256
Alignment:
Q  26 tttgcaattagtccctcccgttaacacccattacaaaaacgtagtggtggcagacaaagacacacgtggcgaaggttgagttggcaaaagcaagcttatg 125  Q
    ||||||||| ||||||||||||||| ||| |||||||||||| ||||||||||||  |||||||||||||||||  ||||||| |||||||  |||||||    
T  10406 tttgcaattcgtccctcccgttaactcccgttacaaaaacgttgtggtggcagacggagacacacgtggcgaagtgtgagttgacaaaagcttgcttatg 10307  T
Q  126 tgtcaagagagatgatgagttgcttgaaaggagggacaaaaaccaaaaacg 176  Q
    |||||||||||||||||||| | | |||||||||||| |||||||||||||    
T  10306 tgtcaagagagatgatgagtggttagaaaggagggaccaaaaccaaaaacg 10256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 4 - 173
Target Start/End: Original strand, 9097 - 9266
Alignment:
Q  4 catccttgtaatttgttaaccatttgcaattagtccctcccgttaacacccattacaaaaacgtagtggtggcagacaaagacacacgtggcgaaggttg 103  Q
    ||||||||||| |||  || | ||||||||| ||||||||||||||| ||| |||||||||||| ||||||||||||| |||||||||||| ||||  ||    
T  9097 catccttgtaagttgccaatcgtttgcaattcgtccctcccgttaactcccgttacaaaaacgttgtggtggcagacagagacacacgtggtgaagtgtg 9196  T
Q  104 agttggcaaaagcaagcttatgtgtcaagagagatgatgagttgcttgaaaggagggacaaaaaccaaaa 173  Q
    |||||||||||||  ||||||||||||||||||||||||| | ||| |||||||| ||| ||||||||||    
T  9197 agttggcaaaagcttgcttatgtgtcaagagagatgatgaatggctagaaaggagagaccaaaaccaaaa 9266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 170 - 242
Target Start/End: Original strand, 9304 - 9376
Alignment:
Q  170 aaaaacgtaaattttgttcattcctttccctctattttttcttcttcatctccaaccccaatttcttcatctc 242  Q
    ||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  9304 aaaaaagtaaatttagttcattcctctccctctattttttcttcttcatctccaaccccaatttcttcatctc 9376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 170 - 232
Target Start/End: Complemental strand, 10230 - 10168
Alignment:
Q  170 aaaaacgtaaattttgttcattcctttccctctattttttcttcttcatctccaaccccaatt 232  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||||||    
T  10230 aaaaacgtacattttgttcattcctctccctctattttttcttcttcatcttcaaccccaatt 10168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 91; Significance: 3e-44; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 26 - 176
Target Start/End: Original strand, 28848653 - 28848803
Alignment:
Q  26 tttgcaattagtccctcccgttaacacccattacaaaaacgtagtggtggcagacaaagacacacgtggcgaaggttgagttggcaaaagcaagcttatg 125  Q
    ||||||||| ||||||||||||||| ||| |||||||||||| ||||||||||||  ||||||||| |||||||  |||||||||||||||  |||||||    
T  28848653 tttgcaattcgtccctcccgttaactcccgttacaaaaacgttgtggtggcagacggagacacacgcggcgaagtgtgagttggcaaaagcttgcttatg 28848752  T
Q  126 tgtcaagagagatgatgagttgcttgaaaggagggacaaaaaccaaaaacg 176  Q
    |||||||||||||||||||| | | |||||||||||| |||||||||||||    
T  28848753 tgtcaagagagatgatgagtggttagaaaggagggaccaaaaccaaaaacg 28848803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 4 - 176
Target Start/End: Complemental strand, 43546712 - 43546540
Alignment:
Q  4 catccttgtaatttgttaaccatttgcaattagtccctcccgttaacacccattacaaaaacgtagtggtggcagacaaagacacacgtggcgaaggttg 103  Q
    ||||||||||| ||  || || ||||||||| ||||||||||||||| ||| |||||||||| | ||||||||||||  ||||||||| |||||||  ||    
T  43546712 catccttgtaagttactagccgtttgcaattcgtccctcccgttaactcccgttacaaaaacattgtggtggcagacggagacacacgcggcgaagtgtg 43546613  T
Q  104 agttggcaaaagcaagcttatgtgtcaagagagatgatgagttgcttgaaaggagggacaaaaaccaaaaacg 176  Q
    ||||||||||||   ||||||||||||||||||||||||||| | | |||||||||||| |||||||||||||    
T  43546612 agttggcaaaagtttgcttatgtgtcaagagagatgatgagtggttagaaaggagggaccaaaaccaaaaacg 43546540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 56 - 176
Target Start/End: Original strand, 25008211 - 25008331
Alignment:
Q  56 ttacaaaaacgtagtggtggcagacaaagacacacgtggcgaaggttgagttggcaaaagcaagcttatgtgtcaagagagatgatgagttgcttgaaag 155  Q
    |||||||||||| |||||||||||| ||||||||||||||||||  |||||||||||||||  ||||||||||||||||||||||||||| | | |||||    
T  25008211 ttacaaaaacgttgtggtggcagacgaagacacacgtggcgaagtgtgagttggcaaaagcttgcttatgtgtcaagagagatgatgagtggttagaaag 25008310  T
Q  156 gagggacaaaaaccaaaaacg 176  Q
    ||||||| |||||||||||||    
T  25008311 gagggaccaaaaccaaaaacg 25008331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 26 - 173
Target Start/End: Original strand, 43545441 - 43545588
Alignment:
Q  26 tttgcaattagtccctcccgttaacacccattacaaaaacgtagtggtggcagacaaagacacacgtggcgaaggttgagttggcaaaagcaagcttatg 125  Q
    |||||||||  |||||||||||||| ||| |||||||||||| ||||||||||||  ||||||| |||| ||||  |||||||||||||||   ||||||    
T  43545441 tttgcaattcatccctcccgttaactcccgttacaaaaacgttgtggtggcagacggagacacatgtggtgaagtgtgagttggcaaaagcttccttatg 43545540  T
Q  126 tgtcaagagagatgatgagttgcttgaaaggagggacaaaaaccaaaa 173  Q
    |||||||||||||||||||| ||| |||||||||||  ||||||||||    
T  43545541 tgtcaagagagatgatgagtggctagaaaggagggatcaaaaccaaaa 43545588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 4 - 173
Target Start/End: Complemental strand, 25009467 - 25009298
Alignment:
Q  4 catccttgtaatttgttaaccatttgcaattagtccctcccgttaacacccattacaaaaacgtagtggtggcagacaaagacacacgtggcgaaggttg 103  Q
    ||||||||||| |||  || | |||||||||  |||||||||||||| | | |||||||||||| ||||||||||||  |||||||| ||| ||||  ||    
T  25009467 catccttgtaagttgccaatcgtttgcaattcatccctcccgttaactctcgttacaaaaacgttgtggtggcagacggagacacacatggtgaagtgtg 25009368  T
Q  104 agttggcaaaagcaagcttatgtgtcaagagagatgatgagttgcttgaaaggagggacaaaaaccaaaa 173  Q
    |||||||||||||  |||||||||||| |||||||||||| | ||| |||||||||||| ||||||||||    
T  25009367 agttggcaaaagcttgcttatgtgtcaggagagatgatgaatggctagaaaggagggaccaaaaccaaaa 25009298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 56 - 173
Target Start/End: Complemental strand, 28849908 - 28849791
Alignment:
Q  56 ttacaaaaacgtagtggtggcagacaaagacacacgtggcgaaggttgagttggcaaaagcaagcttatgtgtcaagagagatgatgagttgcttgaaag 155  Q
    |||||||||||| ||||||||||||  |||||||||||| ||||  |||||||||||||||  ||||||||||||||||||||||||||| | | |||||    
T  28849908 ttacaaaaacgttgtggtggcagacggagacacacgtggtgaagtgtgagttggcaaaagcttgcttatgtgtcaagagagatgatgagtggttagaaag 28849809  T
Q  156 gagggacaaaaaccaaaa 173  Q
    ||||||| ||||||||||    
T  28849808 gagggaccaaaaccaaaa 28849791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 170 - 242
Target Start/End: Complemental strand, 28849756 - 28849683
Alignment:
Q  170 aaaaacgtaaattttgttcattcctttccctctatttttt-cttcttcatctccaaccccaatttcttcatctc 242  Q
    ||||| |||||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||    
T  28849756 aaaaaagtaaatttagttcattcctctccctctatttttttcttcttcatctccaaccccaatttcttcatctc 28849683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 170 - 232
Target Start/End: Original strand, 25008358 - 25008420
Alignment:
Q  170 aaaaacgtaaattttgttcattcctttccctctattttttcttcttcatctccaaccccaatt 232  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||||||    
T  25008358 aaaaacgtacattttgttcattcctctccctctattttttcttcttcatcttcaaccccaatt 25008420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 170 - 232
Target Start/End: Original strand, 28848829 - 28848891
Alignment:
Q  170 aaaaacgtaaattttgttcattcctttccctctattttttcttcttcatctccaaccccaatt 232  Q
    |||||| || ||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  28848829 aaaaacttacattttgttcattcctctccctctattttttcttcttcatctccaaccccaatt 28848891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 170 - 232
Target Start/End: Complemental strand, 43546514 - 43546452
Alignment:
Q  170 aaaaacgtaaattttgttcattcctttccctctattttttcttcttcatctccaaccccaatt 232  Q
    ||||||||| ||||||||||||||| || ||||||||||||||||||||||||||||||||||    
T  43546514 aaaaacgtacattttgttcattcctctctctctattttttcttcttcatctccaaccccaatt 43546452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 170 - 229
Target Start/End: Complemental strand, 25009263 - 25009204
Alignment:
Q  170 aaaaacgtaaattttgttcattcctttccctctattttttcttcttcatctccaacccca 229  Q
    ||||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  25009263 aaaaaagtaaatttagttcattcctctccctctattttttcttcttcatctccaacccca 25009204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 170 - 229
Target Start/End: Original strand, 43545623 - 43545682
Alignment:
Q  170 aaaaacgtaaattttgttcattcctttccctctattttttcttcttcatctccaacccca 229  Q
    ||||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  43545623 aaaaaagtaaatttagttcattcctctccctctattttttcttcttcatctccaacccca 43545682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 198 - 243
Target Start/End: Original strand, 11670172 - 11670217
Alignment:
Q  198 cctctattttttcttcttcatctccaaccccaatttcttcatctct 243  Q
    ||||| |||||||||||||||||||||| |||||||||||||||||    
T  11670172 cctctgttttttcttcttcatctccaactccaatttcttcatctct 11670217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 88 - 181
Target Start/End: Complemental strand, 39788068 - 39787975
Alignment:
Q  88 cacgtggcgaaggttgagttggcaaaagcaagcttatgtgtcaagagagatgatgagttgcttgaaaggagggacaaaaaccaaaaacgtaaat 181  Q
    ||||||||||||  ||||||||||||| ||| ||||||| |   |||||||||  ||| | | ||| |||||||| ||||||||||||||||||    
T  39788068 cacgtggcgaagtgtgagttggcaaaatcaaacttatgtatatcgagagatgacaagtggttagaatggagggaccaaaaccaaaaacgtaaat 39787975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 90; Significance: 1e-43; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 4 - 173
Target Start/End: Original strand, 46651438 - 46651607
Alignment:
Q  4 catccttgtaatttgttaaccatttgcaattagtccctcccgttaacacccattacaaaaacgtagtggtggcagacaaagacacacgtggcgaaggttg 103  Q
    ||||||||||| |||  || | |||||||||  |||||||||||||| ||| |||||||||||| ||||||||||||  |||||||||||| ||||  ||    
T  46651438 catccttgtaagttgccaatcgtttgcaattcatccctcccgttaactcccgttacaaaaacgttgtggtggcagacggagacacacgtggtgaagtgtg 46651537  T
Q  104 agttggcaaaagcaagcttatgtgtcaagagagatgatgagttgcttgaaaggagggacaaaaaccaaaa 173  Q
    |||||||||||||  ||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||    
T  46651538 agttggcaaaagcttgcttatgtgtcaagagagatgatgagtggctagaaaggagggaccaaaaccaaaa 46651607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 4 - 176
Target Start/End: Complemental strand, 46652763 - 46652591
Alignment:
Q  4 catccttgtaatttgttaaccatttgcaattagtccctcccgttaacacccattacaaaaacgtagtggtggcagacaaagacacacgtggcgaaggttg 103  Q
    ||||||||||| ||  || || ||||||||| ||||||||||||||| ||| ||||||||||||  |||||||||||  ||||||||| |||||||  ||    
T  46652763 catccttgtaagttactagccgtttgcaattcgtccctcccgttaactcccgttacaaaaacgttatggtggcagacggagacacacgcggcgaagtgtg 46652664  T
Q  104 agttggcaaaagcaagcttatgtgtcaagagagatgatgagttgcttgaaaggagggacaaaaaccaaaaacg 176  Q
    |||||||||||||  ||||||||||||||||||||||||||| | | |||||||||||| |||||||||||||    
T  46652663 agttggcaaaagcttgcttatgtgtcaagagagatgatgagtggttagaaaggagggaccaaaaccaaaaacg 46652591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 170 - 242
Target Start/End: Original strand, 46651639 - 46651711
Alignment:
Q  170 aaaaacgtaaattttgttcattcctttccctctattttttcttcttcatctccaaccccaatttcttcatctc 242  Q
    ||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  46651639 aaaaaagtaaatttagttcattcctctccctctattttttcttcttcatctccaaccccaatttcttcatctc 46651711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 170 - 232
Target Start/End: Complemental strand, 46652565 - 46652503
Alignment:
Q  170 aaaaacgtaaattttgttcattcctttccctctattttttcttcttcatctccaaccccaatt 232  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  46652565 aaaaacgtacattttgttcattcctctccctctattttttcttcttcatctccaaccccaatt 46652503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 196 - 241
Target Start/End: Original strand, 28361093 - 28361138
Alignment:
Q  196 tccctctattttttcttcttcatctccaaccccaatttcttcatct 241  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||    
T  28361093 tccctctattttttcttcttcatctccaaccccaatttcatcatct 28361138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 198 - 243
Target Start/End: Original strand, 50315651 - 50315696
Alignment:
Q  198 cctctattttttcttcttcatctccaaccccaatttcttcatctct 243  Q
    ||||| ||||||||||||| |||||||| |||||||||||||||||    
T  50315651 cctctgttttttcttcttcgtctccaactccaatttcttcatctct 50315696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 243
Target Start/End: Original strand, 46604763 - 46604807
Alignment:
Q  199 ctctattttttcttcttcatctccaaccccaatttcttcatctct 243  Q
    |||| ||||||||||||||||||||||| || |||||||||||||    
T  46604763 ctctgttttttcttcttcatctccaacctcattttcttcatctct 46604807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 181
Target Start/End: Original strand, 31034307 - 31034386
Alignment:
Q  102 tgagttggcaaaagcaagcttatgtgtcaagagagatgatgagttgcttgaaaggagggacaaaaaccaaaaacgtaaat 181  Q
    ||||||||||||| || ||||||||||    ||||||||  ||| ||| ||| |||||||| ||||||||||||||||||    
T  31034307 tgagttggcaaaaacaggcttatgtgtactaagagatgacaagtcgctagaatggagggaccaaaaccaaaaacgtaaat 31034386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 4 - 176
Target Start/End: Original strand, 193668 - 193840
Alignment:
Q  4 catccttgtaatttgttaaccatttgcaattagtccctcccgttaacacccattacaaaaacgtagtggtggcagacaaagacacacgtggcgaaggttg 103  Q
    ||||||||||| ||  || || ||||||||| ||||||||||||||| ||| |||||||||||| ||||||||||||  ||||||||| |||||||  ||    
T  193668 catccttgtaagttaatagccgtttgcaattcgtccctcccgttaactcccgttacaaaaacgttgtggtggcagacggagacacacgcggcgaagtgtg 193767  T
Q  104 agttggcaaaagcaagcttatgtgtcaagagagatgatgagttgcttgaaaggagggacaaaaaccaaaaacg 176  Q
    |||||||||||||  |||||||||||||||| |||||||||| | | |||||||||||| |||||||||||||    
T  193768 agttggcaaaagcttgcttatgtgtcaagagcgatgatgagtggttagaaaggagggaccaaaaccaaaaacg 193840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 170 - 232
Target Start/End: Original strand, 193866 - 193928
Alignment:
Q  170 aaaaacgtaaattttgttcattcctttccctctattttttcttcttcatctccaaccccaatt 232  Q
    ||||||||| ||||||||||||||| ||||| |||| ||||||||||||||||||||||||||    
T  193866 aaaaacgtacattttgttcattcctctccctatattatttcttcttcatctccaaccccaatt 193928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 85; Significance: 1e-40; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 4 - 176
Target Start/End: Complemental strand, 39929336 - 39929164
Alignment:
Q  4 catccttgtaatttgttaaccatttgcaattagtccctcccgttaacacccattacaaaaacgtagtggtggcagacaaagacacacgtggcgaaggttg 103  Q
    ||||||||||| ||  || || ||||||||| ||||||||||||||| ||| ||||||||||||  |||||||||||  ||||||||| |||||||  ||    
T  39929336 catccttgtaagttactagccgtttgcaattcgtccctcccgttaactcccgttacaaaaacgttatggtggcagacggagacacacgcggcgaagtgtg 39929237  T
Q  104 agttggcaaaagcaagcttatgtgtcaagagagatgatgagttgcttgaaaggagggacaaaaaccaaaaacg 176  Q
    |||||||||||||  ||||||||||||||||||||||||||| | | |||||||||||  |||||||||||||    
T  39929236 agttggcaaaagcttgcttatgtgtcaagagagatgatgagtggttagaaaggagggatcaaaaccaaaaacg 39929164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 26 - 173
Target Start/End: Original strand, 39928032 - 39928179
Alignment:
Q  26 tttgcaattagtccctcccgttaacacccattacaaaaacgtagtggtggcagacaaagacacacgtggcgaaggttgagttggcaaaagcaagcttatg 125  Q
    |||||||||  |||||||||||||| ||| |||||||||||| ||||||||||||  ||||||| |||| ||||  |||||||||||||||  |||||||    
T  39928032 tttgcaattcatccctcccgttaactcccgttacaaaaacgttgtggtggcagacggagacacatgtggtgaagtgtgagttggcaaaagcttgcttatg 39928131  T
Q  126 tgtcaagagagatgatgagttgcttgaaaggagggacaaaaaccaaaa 173  Q
    ||||||||||||||||| || ||| |||||||||||  ||||||||||    
T  39928132 tgtcaagagagatgatgcgtggctagaaaggagggatcaaaaccaaaa 39928179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 5236319 - 5236484
Alignment:
Q  1 aaccatccttgtaatttgttaaccatttgcaattagtccctcccgttaacacccattacaaaaacgtagtggtggcagacaaagacacacgtggcgaagg 100  Q
    |||||||||||||| ||||||||| |||| |||||||||||||           ||||||||||||| ||||||| |||   |||||||||||||||| |    
T  5236319 aaccatccttgtaagttgttaaccgtttgtaattagtccctcct----------attacaaaaacgttgtggtggtagatggagacacacgtggcgaatg 5236408  T
Q  101 ttgagttggcaaaagcaagcttatgtgtcaagagagatgatgagttgcttgaaaggagggacaaaaaccaaaaacg 176  Q
     ||||||||||||||||   ||||||||||||||||||||||||| ||| |||||||||||| || ||||||||||    
T  5236409 gtgagttggcaaaagcagaattatgtgtcaagagagatgatgagtggctagaaaggagggaccaagaccaaaaacg 5236484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 56 - 174
Target Start/End: Original strand, 46253104 - 46253222
Alignment:
Q  56 ttacaaaaacgtagtggtggcagacaaagacacacgtggcgaaggttgagttggcaaaagcaagcttatgtgtcaagagagatgatgagttgcttgaaag 155  Q
    ||||||||| || ||||||||||||  ||||||||| |||||||  |||||||||||||||  ||||||||||||||||||||||||||| | | |||||    
T  46253104 ttacaaaaatgttgtggtggcagacggagacacacgcggcgaagtgtgagttggcaaaagcttgcttatgtgtcaagagagatgatgagtggttagaaag 46253203  T
Q  156 gagggacaaaaaccaaaaa 174  Q
    ||||||  |||||||||||    
T  46253204 gagggatcaaaaccaaaaa 46253222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 170 - 242
Target Start/End: Original strand, 39928212 - 39928284
Alignment:
Q  170 aaaaacgtaaattttgttcattcctttccctctattttttcttcttcatctccaaccccaatttcttcatctc 242  Q
    ||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  39928212 aaaaaagtaaatttagttcattcctctccctctattttttcttcttcatctccaaccccaatttcttcatctc 39928284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 170 - 232
Target Start/End: Complemental strand, 39929138 - 39929076
Alignment:
Q  170 aaaaacgtaaattttgttcattcctttccctctattttttcttcttcatctccaaccccaatt 232  Q
    ||||||||| ||||||||||||||| || ||||||||||||||||||||||||||||||||||    
T  39929138 aaaaacgtacattttgttcattcctctctctctattttttcttcttcatctccaaccccaatt 39929076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 26 - 175
Target Start/End: Original strand, 13506824 - 13506972
Alignment:
Q  26 tttgcaattagtccctcccgttaacacccattacaaaaacgtagtggtggcagacaaagacacacgtggcgaaggttgagttggcaaaagcaagcttatg 125  Q
    ||||||||| ||||||||||||||| | | |||||||||  | ||||||||||||| ||| |||| ||||||||  ||| ||||||||||||  ||| ||    
T  13506824 tttgcaattcgtccctcccgttaactctcgttacaaaaatattgtggtggcagacagagatacacatggcgaagtgtgacttggcaaaagcagacttttg 13506923  T
Q  126 tgtcaagagagatgatgagttgcttgaaaggagggacaaaaaccaaaaac 175  Q
    || ||||||||| ||| ||| ||  | |||||||||| |||| |||||||    
T  13506924 tggcaagagagaagataagtggcaag-aaggagggaccaaaaacaaaaac 13506972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 182 - 240
Target Start/End: Original strand, 5236520 - 5236578
Alignment:
Q  182 tttgttcattcctttccctctattttttcttcttcatctccaaccccaatttcttcatc 240  Q
    ||||||||||||| ||||| | |||||||||||||||||||||||| ||||||||||||    
T  5236520 tttgttcattcctctccctttgttttttcttcttcatctccaaccctaatttcttcatc 5236578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 170 - 224
Target Start/End: Original strand, 46253251 - 46253305
Alignment:
Q  170 aaaaacgtaaattttgttcattcctttccctctattttttcttcttcatctccaa 224  Q
    ||||||||| ||||||||||||| | |||||||||||||||||||||||||||||    
T  46253251 aaaaacgtacattttgttcattcttctccctctattttttcttcttcatctccaa 46253305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 121 - 175
Target Start/End: Complemental strand, 5236952 - 5236898
Alignment:
Q  121 ttatgtgtcaagagagatgatgagttgcttgaaaggagggacaaaaaccaaaaac 175  Q
    |||||||||||||||||||| |||| ||| |||||||||||| ||||||||||||    
T  5236952 ttatgtgtcaagagagatgacgagtggctagaaaggagggaccaaaaccaaaaac 5236898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 196 - 241
Target Start/End: Complemental strand, 4241404 - 4241359
Alignment:
Q  196 tccctctattttttcttcttcatctccaaccccaatttcttcatct 241  Q
    ||||||| |||||||||||| |||||||||||||||||||||||||    
T  4241404 tccctctgttttttcttctttatctccaaccccaatttcttcatct 4241359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 170 - 232
Target Start/End: Complemental strand, 5236872 - 5236812
Alignment:
Q  170 aaaaacgtaaattttgttcattcctttccctctattttttcttcttcatctccaaccccaatt 232  Q
    ||||| ||||||||||||||||||| |||| || |||||||||||  ||||||||||||||||    
T  5236872 aaaaaagtaaattttgttcattcctctccccctgttttttcttct--atctccaaccccaatt 5236812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 196 - 241
Target Start/End: Complemental strand, 4284129 - 4284084
Alignment:
Q  196 tccctctattttttcttcttcatctccaaccccaatttcttcatct 241  Q
    ||||||| |||||||||||| |||| ||||||||||||||||||||    
T  4284129 tccctctgttttttcttctttatcttcaaccccaatttcttcatct 4284084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 241
Target Start/End: Original strand, 33607799 - 33607835
Alignment:
Q  205 tttttcttcttcatctccaaccccaatttcttcatct 241  Q
    |||| ||||||||||||| ||||||||||||||||||    
T  33607799 ttttccttcttcatctccgaccccaatttcttcatct 33607835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 243
Target Start/End: Complemental strand, 33609076 - 33609032
Alignment:
Q  199 ctctattttttcttcttcatctccaaccccaatttcttcatctct 243  Q
    |||| ||||||||||||||||||||| | || |||||||||||||    
T  33609076 ctctgttttttcttcttcatctccaatctcattttcttcatctct 33609032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0524 (Bit Score: 82; Significance: 8e-39; HSPs: 5)
Name: scaffold0524
Description:

Target: scaffold0524; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 4 - 173
Target Start/End: Complemental strand, 9051 - 8882
Alignment:
Q  4 catccttgtaatttgttaaccatttgcaattagtccctcccgttaacacccattacaaaaacgtagtggtggcagacaaagacacacgtggcgaaggttg 103  Q
    ||||||||||| |||  || | ||||||||| ||||||||||||||| ||| |||||||||||| ||||||| ||||  |||||||||||| ||||  ||    
T  9051 catccttgtaagttgccaatcgtttgcaattcgtccctcccgttaactcccgttacaaaaacgttgtggtggtagacggagacacacgtggtgaagtgtg 8952  T
Q  104 agttggcaaaagcaagcttatgtgtcaagagagatgatgagttgcttgaaaggagggacaaaaaccaaaa 173  Q
    |||||||||||||    ||||||||||||||||||||||||| ||| |||||||||||| ||||||||||    
T  8951 agttggcaaaagctttgttatgtgtcaagagagatgatgagtggctagaaaggagggaccaaaaccaaaa 8882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0524; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 102 - 176
Target Start/End: Original strand, 7853 - 7927
Alignment:
Q  102 tgagttggcaaaagcaagcttatgtgtcaagagagatgatgagttgcttgaaaggagggacaaaaaccaaaaacg 176  Q
    |||||||||||||||  ||||||||||||||||||||||||||| | | |||||||||||| |||||||||||||    
T  7853 tgagttggcaaaagcttgcttatgtgtcaagagagatgatgagtggttagaaaggagggaccaaaaccaaaaacg 7927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0524; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 170 - 232
Target Start/End: Original strand, 7953 - 8015
Alignment:
Q  170 aaaaacgtaaattttgttcattcctttccctctattttttcttcttcatctccaaccccaatt 232  Q
    ||||||||| ||||||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  7953 aaaaacgtacattttgttcattcctctccctctatgttttcttcttcatctccaaccccaatt 8015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0524; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 170 - 227
Target Start/End: Complemental strand, 8853 - 8796
Alignment:
Q  170 aaaaacgtaaattttgttcattcctttccctctattttttcttcttcatctccaaccc 227  Q
    ||||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||    
T  8853 aaaaaagtaaatttagttcattcctctccctctattttttcttcttcatctccaaccc 8796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0524; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 77
Target Start/End: Original strand, 7775 - 7848
Alignment:
Q  4 catccttgtaatttgttaaccatttgcaattagtccctcccgttaacacccattacaaaaacgtagtggtggca 77  Q
    ||||||||||| ||  || || |||||||||  |||||||||||||| ||| |||||||||||| |||||||||    
T  7775 catccttgtaagttactagccgtttgcaattcatccctcccgttaactcccgttacaaaaacgttgtggtggca 7848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 82; Significance: 8e-39; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 4 - 173
Target Start/End: Complemental strand, 8392785 - 8392616
Alignment:
Q  4 catccttgtaatttgttaaccatttgcaattagtccctcccgttaacacccattacaaaaacgtagtggtggcagacaaagacacacgtggcgaaggttg 103  Q
    ||||||||||| |||  || | |||||||||  |||||||||||||| ||| |||||||||||| ||||||||||||  |||||||||||| || |  ||    
T  8392785 catccttgtaagttgccaatcgtttgcaattcatccctcccgttaactcccgttacaaaaacgttgtggtggcagacggagacacacgtggtgaggtgtg 8392686  T
Q  104 agttggcaaaagcaagcttatgtgtcaagagagatgatgagttgcttgaaaggagggacaaaaaccaaaa 173  Q
    |||||||||||||  ||||||||||||||||||||||||||| ||| |||| ||||||| ||||||||||    
T  8392685 agttggcaaaagcttgcttatgtgtcaagagagatgatgagtggctagaaaagagggaccaaaaccaaaa 8392616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 4 - 160
Target Start/End: Original strand, 45981484 - 45981640
Alignment:
Q  4 catccttgtaatttgttaaccatttgcaattagtccctcccgttaacacccattacaaaaacgtagtggtggcagacaaagacacacgtggcgaaggttg 103  Q
    ||||||||||| ||  || || ||||||||| ||||||||||||||| ||| |||||||||||| ||||| ||||||  ||||||||| |||||||  ||    
T  45981484 catccttgtaagttactagccgtttgcaattcgtccctcccgttaactcccgttacaaaaacgttgtggttgcagacggagacacacgcggcgaagtgtg 45981583  T
Q  104 agttggcaaaagcaagcttatgtgtcaagagagatgatgagttgcttgaaaggaggg 160  Q
    |||||||||||||  ||||||||||||||||||||||||||| | | ||||||||||    
T  45981584 agttggcaaaagcttgcttatgtgtcaagagagatgatgagtggttagaaaggaggg 45981640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 56 - 175
Target Start/End: Original strand, 8391520 - 8391639
Alignment:
Q  56 ttacaaaaacgtagtggtggcagacaaagacacacgtggcgaaggttgagttggcaaaagcaagcttatgtgtcaagagagatgatgagttgcttgaaag 155  Q
    |||||||||||| ||||||||||||  ||||||||  |||||||  |||||||||||||||  ||||||||||||||||||||||||||| | | |||||    
T  8391520 ttacaaaaacgttgtggtggcagaccgagacacacacggcgaagtgtgagttggcaaaagcttgcttatgtgtcaagagagatgatgagtggttagaaag 8391619  T
Q  156 gagggacaaaaaccaaaaac 175  Q
    ||||||| ||||||||||||    
T  8391620 gagggaccaaaaccaaaaac 8391639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 56 - 173
Target Start/End: Complemental strand, 45982739 - 45982622
Alignment:
Q  56 ttacaaaaacgtagtggtggcagacaaagacacacgtggcgaaggttgagttggcaaaagcaagcttatgtgtcaagagagatgatgagttgcttgaaag 155  Q
    |||||||||||| ||||||||||||  ||||| |||||| ||||  |||||||||||||||  ||||||||||||||||||||||||||| ||| ||||     
T  45982739 ttacaaaaacgttgtggtggcagacggagacatacgtggtgaagtgtgagttggcaaaagcttgcttatgtgtcaagagagatgatgagtggctagaaat 45982640  T
Q  156 gagggacaaaaaccaaaa 173  Q
    ||||||| ||||||||||    
T  45982639 gagggaccaaaaccaaaa 45982622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 170 - 242
Target Start/End: Complemental strand, 8392586 - 8392514
Alignment:
Q  170 aaaaacgtaaattttgttcattcctttccctctattttttcttcttcatctccaaccccaatttcttcatctc 242  Q
    ||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  8392586 aaaaaagtaaatttagttcattcctctccctctattttttcttcttcatctccaaccccaatttcttcatctc 8392514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 170 - 232
Target Start/End: Original strand, 8391666 - 8391728
Alignment:
Q  170 aaaaacgtaaattttgttcattcctttccctctattttttcttcttcatctccaaccccaatt 232  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  8391666 aaaaacgtacattttgttcattcctctccctctattttttcttcttcatctccaaccccaatt 8391728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 170 - 232
Target Start/End: Original strand, 45981682 - 45981744
Alignment:
Q  170 aaaaacgtaaattttgttcattcctttccctctattttttcttcttcatctccaaccccaatt 232  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  45981682 aaaaacgtacattttgttcattcctctccctctattttttcttcttcatctccaaccccaatt 45981744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 196 - 241
Target Start/End: Original strand, 33551905 - 33551950
Alignment:
Q  196 tccctctattttttcttcttcatctccaaccccaatttcttcatct 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  33551905 tccctctattttttcttcttcatctccaaccccaatttcttcatct 33551950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 170 - 229
Target Start/End: Complemental strand, 45982587 - 45982528
Alignment:
Q  170 aaaaacgtaaattttgttcattcctttccctctattttttcttcttcatctccaacccca 229  Q
    ||||| |||||||| |||||||||| |||||||| |||||||||||||||||||||||||    
T  45982587 aaaaaagtaaatttagttcattcctctccctctactttttcttcttcatctccaacccca 45982528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 198 - 243
Target Start/End: Complemental strand, 41881382 - 41881337
Alignment:
Q  198 cctctattttttcttcttcatctccaaccccaatttcttcatctct 243  Q
    ||||||||||||||||||| |||||||| |||||||||||||||||    
T  41881382 cctctattttttcttcttcgtctccaactccaatttcttcatctct 41881337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 198 - 243
Target Start/End: Original strand, 44458937 - 44458982
Alignment:
Q  198 cctctattttttcttcttcatctccaaccccaatttcttcatctct 243  Q
    ||||| ||||||||||||||||| |||| |||||||||||||||||    
T  44458937 cctctgttttttcttcttcatcttcaactccaatttcttcatctct 44458982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 236
Target Start/End: Original strand, 32641400 - 32641440
Alignment:
Q  196 tccctctattttttcttcttcatctccaaccccaatttctt 236  Q
    ||||||||||||| ||||||| |||||| ||||||||||||    
T  32641400 tccctctatttttccttcttcgtctccatccccaatttctt 32641440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 79; Significance: 5e-37; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 4 - 162
Target Start/End: Complemental strand, 35506910 - 35506752
Alignment:
Q  4 catccttgtaatttgttaaccatttgcaattagtccctcccgttaacacccattacaaaaacgtagtggtggcagacaaagacacacgtggcgaaggttg 103  Q
    ||||||||||| ||  || || ||||||||| ||||||||||||||| ||| |||||||||||| ||||||||||||  ||||||||  |||||||  ||    
T  35506910 catccttgtaagttactagccgtttgcaattcgtccctcccgttaactcccgttacaaaaacgttgtggtggcagacggagacacacacggcgaagtgtg 35506811  T
Q  104 agttggcaaaagcaagcttatgtgtcaagagagatgatgagttgcttgaaaggagggac 162  Q
    |||||||||||||  ||||||||||||||||||||||||||| | | ||||||||||||    
T  35506810 agttggcaaaagcttgcttatgtgtcaagagagatgatgagtggttagaaaggagggac 35506752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 3 - 180
Target Start/End: Complemental strand, 35750841 - 35750675
Alignment:
Q  3 ccatccttgtaatttgttaaccatttgcaattagtccctcccgttaacacccattacaaaaacgtagtggtggcagacaaagacacacgtggcgaaggtt 102  Q
    |||||||||||| ||||||| | |||||||||||||||||||||||          ||||||||| ||||||||||||  |||||||||||||||| | |    
T  35750841 ccatccttgtaagttgttaatcgtttgcaattagtccctcccgtta----------caaaaacgttgtggtggcagacggagacacacgtggcgaatggt 35750752  T
Q  103 gagttggcaaaagcaagcttatgtgtcaagagagatgatgagttgcttgaaaggagggacaaaaaccaaaaacgtaaa 180  Q
    |||||||| |||||| |||||||||||||||||| | |||||| |||  ||||||||||| ||||||||||| |||||    
T  35750751 gagttggc-aaagcatgcttatgtgtcaagagagctaatgagtggctaaaaaggagggacgaaaaccaaaaatgtaaa 35750675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 4 - 173
Target Start/End: Original strand, 35505599 - 35505768
Alignment:
Q  4 catccttgtaatttgttaaccatttgcaattagtccctcccgttaacacccattacaaaaacgtagtggtggcagacaaagacacacgtggcgaaggttg 103  Q
    ||||||||||| |||  || | ||||||||| ||||||||||||||| |||  |||||||| || ||||||||||||  ||||| |||||| ||||  ||    
T  35505599 catccttgtaagttgccaatcgtttgcaattcgtccctcccgttaactcccgctacaaaaatgttgtggtggcagacggagacagacgtggtgaagtgtg 35505698  T
Q  104 agttggcaaaagcaagcttatgtgtcaagagagatgatgagttgcttgaaaggagggacaaaaaccaaaa 173  Q
    |||||||||||||   ||||||| |||| ||||||||||||| ||| |||||||| ||||||||||||||    
T  35505699 agttggcaaaagctttcttatgtttcaaaagagatgatgagtggctagaaaggagagacaaaaaccaaaa 35505768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 35750193 - 35750287
Alignment:
Q  1 aaccatccttgtaatttgttaaccatttgcaattagtccctcccgttaacacccattacaaaaacgtagtggtggcagacaaagacacacgtggc 95  Q
    ||||||||| |||| ||||||||| ||||||||||||| ||||||||||  |||||||||||||||| ||||||||||||| |||||||||||||    
T  35750193 aaccatcctcgtaagttgttaaccgtttgcaattagtctctcccgttaattcccattacaaaaacgttgtggtggcagacagagacacacgtggc 35750287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 176 - 242
Target Start/End: Original strand, 35505810 - 35505876
Alignment:
Q  176 gtaaattttgttcattcctttccctctattttttcttcttcatctccaaccccaatttcttcatctc 242  Q
    |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  35505810 gtaaatttagttcattcctctccctctattttttcttcttcatctccaaccccaatttcttcatctc 35505876  T

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Target: chr8; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 170 - 232
Target Start/End: Complemental strand, 35506714 - 35506652
Alignment:
Q  170 aaaaacgtaaattttgttcattcctttccctctattttttcttcttcatctccaaccccaatt 232  Q
    ||||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||||||    
T  35506714 aaaaacgtacattttgttcattcctctccctctatttttccttcttcatctccaaccccaatt 35506652  T

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Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 196 - 235
Target Start/End: Original strand, 35919295 - 35919334
Alignment:
Q  196 tccctctattttttcttcttcatctccaaccccaatttct 235  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  35919295 tccctctattttttcttcttcatctccaaccccaatttct 35919334  T

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Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 170 - 232
Target Start/End: Original strand, 35750340 - 35750406
Alignment:
Q  170 aaaaacgtaaattttgttcattcctttccctc----tattttttcttcttcatctccaaccccaatt 232  Q
    ||||||||||||||||||||| | | ||||||    | |||||||||||||||||||||||||||||    
T  35750340 aaaaacgtaaattttgttcatccttctccctctgttttttttttcttcttcatctccaaccccaatt 35750406  T

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Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 243
Target Start/End: Complemental strand, 45448224 - 45448180
Alignment:
Q  199 ctctattttttcttcttcatctccaaccccaatttcttcatctct 243  Q
    |||| ||||||||||||||||||||||| || |||||||||||||    
T  45448224 ctctgttttttcttcttcatctccaacctcattttcttcatctct 45448180  T

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Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 232
Target Start/End: Complemental strand, 35750637 - 35750591
Alignment:
Q  186 ttcattcctttccctctattttttcttcttcatctccaaccccaatt 232  Q
    ||||||||| ||||||  |||||||||||||||||||||| ||||||    
T  35750637 ttcattcctctccctccgttttttcttcttcatctccaactccaatt 35750591  T

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Target: scaffold0369 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 56 - 173
Target Start/End: Complemental strand, 8210 - 8092
Alignment:
Q  56 ttacaaaaacgtagtggtggcagacaaagacacacgtggcgaaggttgagttggcaaaa-gcaagcttatgtgtcaagagagatgatgagttgcttgaaa 154  Q
    |||||||||||| ||||||||||||| |||||||||||| ||||  |||||||| |||| ||  ||||||||||||||||||||||||||| ||| ||||    
T  8210 ttacaaaaacgttgtggtggcagacagagacacacgtggtgaagtgtgagttggaaaaaagcttgcttatgtgtcaagagagatgatgagtggctagaaa 8111  T
Q  155 ggagggacaaaaaccaaaa 173  Q
    |||||||| ||||||||||    
T  8110 ggagggaccaaaaccaaaa 8092  T

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Target: scaffold0369; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 185 - 229
Target Start/End: Complemental strand, 8048 - 8004
Alignment:
Q  185 gttcattcctttccctctattttttcttcttcatctccaacccca 229  Q
    |||||||||| ||||||||||||||||||||||||||||||||||    
T  8048 gttcattcctctccctctattttttcttcttcatctccaacccca 8004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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