View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2638_low_20 (Length: 231)
Name: NF2638_low_20
Description: NF2638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2638_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 9896556 - 9896774
Alignment:
| Q |
1 |
taacatgcacagtcacaaagtgccaggccaagtaaaggaaactctgaaattacatgcacattcactggggaatcatagttcatacctaaatttttatact |
100 |
Q |
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| T |
9896556 |
taacatgcacagtcacaaagtgccaggccaagtaaaggaaactctgaaattacatgcacattcactggggaatcatagttcatacctaaatttttatact |
9896655 |
T |
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| Q |
101 |
acatgcacaatcacaaaatcacaaagtgtcaaatttacaaagttcaagaaagtaccatatcccgactagggttcgcagcctcagtttcctgcaaatctgg |
200 |
Q |
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| T |
9896656 |
acatgcacaatcacaaaatcacaaagtgtcaaatttacaaagtttaagaaagtaccctataccgactagggttcgcagcctcagtttcctgcaaatctgg |
9896755 |
T |
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| Q |
201 |
tatagctgcaacttcttct |
219 |
Q |
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| T |
9896756 |
tatagctgcaacttcttct |
9896774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 34 - 117
Target Start/End: Original strand, 9896489 - 9896574
Alignment:
| Q |
34 |
aaaggaaactct--gaaattacatgcacattcactggggaatcatagttcatacctaaatttttatactacatgcacaatcacaaa |
117 |
Q |
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|||||||||||| ||||||| | |||||||||| || |||||||||||||||||||||||||||| ||||||||| ||||||| |
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| T |
9896489 |
aaaggaaactctatgaaattatacgcacattcacaaggaaatcatagttcatacctaaatttttatataacatgcacagtcacaaa |
9896574 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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