View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2638_low_4 (Length: 382)
Name: NF2638_low_4
Description: NF2638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2638_low_4 |
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| [»] scaffold0168 (3 HSPs) |
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Alignment Details
Target: scaffold0168 (Bit Score: 305; Significance: 1e-171; HSPs: 3)
Name: scaffold0168
Description:
Target: scaffold0168; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 1 - 364
Target Start/End: Original strand, 21384 - 21748
Alignment:
| Q |
1 |
ccgaggagtgtccgtacttcataggttgtgtacagtggtggcnnnnnnnn-atataaattttacatggatagtatttattatgagtgatgaaattgtgag |
99 |
Q |
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| T |
21384 |
ccgagaagtgtctgtgcttcataggttgtgtacagtggtggctttttttttatataaattttacatggatagtatttattatgagtgatgaaattgtgag |
21483 |
T |
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| Q |
100 |
agagaacttgcaaacaagatagaatgattcattgattttccttactttattgaataaagactacaaagtatgtatgtaagatgtaagttgcaccataagc |
199 |
Q |
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| T |
21484 |
agagaacttgcaaacaagatagattgattcattgattttccttactttattgaataaagactacaaagtatgtatacaagatgtaagttgcaccataagc |
21583 |
T |
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| Q |
200 |
taggctatgtctaacatagagtacaaatgttattaacttcctctaattgtcatcaactaactttggagtcttctcttcacttgaattaagttcatgtaat |
299 |
Q |
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| T |
21584 |
taggctatgtctaacatagagtacaactgttattaacttcctctaattgtcatcaactaactttggagtcttctcttcacttgaattaagttcatgtaat |
21683 |
T |
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| Q |
300 |
agtattgaaaatttgaaaatatgaccttaaacatgtaactttaggacttgggtcatccagcaggt |
364 |
Q |
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| T |
21684 |
agtattgaaaatttgaaaatatgaccttaaacatgtaactttaggacttgggtcatccagcaggt |
21748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0168; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 21255 - 21328
Alignment:
| Q |
1 |
ccgaggagtgtccgtacttcataggttgtgtacagtggtggcnnnnnnnnatataaattttacatggatagtat |
74 |
Q |
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| T |
21255 |
ccgaggagtatccgtgcttcataggttgtgtacagtggtggcttttttttatataaattttacatggatagtat |
21328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0168; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 21126 - 21199
Alignment:
| Q |
1 |
ccgaggagtgtccgtacttcataggttgtgtacagtggtggcnnnnnnnnatataaattttacatggatagtat |
74 |
Q |
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| T |
21126 |
ccgagaagtatccgtgcttcataggttgtgtacagtggtggcttttttttatataaattttacatggatagtat |
21199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 251 - 298
Target Start/End: Original strand, 33242283 - 33242330
Alignment:
| Q |
251 |
atcaactaactttggagtcttctcttcacttgaattaagttcatgtaa |
298 |
Q |
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| T |
33242283 |
atcaactaaatttggagtcttctcttcatttgaattaagttcatgtaa |
33242330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 261 - 298
Target Start/End: Original strand, 33248779 - 33248816
Alignment:
| Q |
261 |
tttggagtcttctcttcacttgaattaagttcatgtaa |
298 |
Q |
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| T |
33248779 |
tttggagtcttctcttcatttgaattaagttcatgtaa |
33248816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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