View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2638_low_5 (Length: 367)
Name: NF2638_low_5
Description: NF2638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2638_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 152 - 355
Target Start/End: Original strand, 41668357 - 41668563
Alignment:
| Q |
152 |
attgtgagactagctagcatcgagtatggatgctctatataggttacgagcgcctcttctatttcgataactctcacactttactgtgtgaaacgatta- |
250 |
Q |
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| T |
41668357 |
attgtgagactagctagcatcgagtatggatgctctatataggttacgagcgcctcttctatttcgataactctcacactttactgtgtgaaacaattat |
41668456 |
T |
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| Q |
251 |
--gatggattccttctggtcaagtgactacgagagtgattgatatcaatcctttacaaaattattagaagcatgttaatttttgtttgtttctaattgtt |
348 |
Q |
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| T |
41668457 |
tagatggattccttctggtcaagtgactacgagagtgattgacatcaatcctttacaaaattattagaagcatgttaatttttgtttgtttctaattgtt |
41668556 |
T |
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| Q |
349 |
aaatatt |
355 |
Q |
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||||||| |
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| T |
41668557 |
aaatatt |
41668563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 41668247 - 41668361
Alignment:
| Q |
1 |
cttcctttctccgcaagaataattaatatcgtaccaaggttaccaagagtagtgtttttcatttgtaaataggagaattgtaaataacattaaagcattg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
41668247 |
cttcctttctccgcaagaataattaatatcgtaccaaggttaccaagagtagtgtttttcatttgtaaataggagaattgtaaataacattagagcattg |
41668346 |
T |
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| Q |
101 |
aaaataaactattgt |
115 |
Q |
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| T |
41668347 |
aaaataaactattgt |
41668361 |
T |
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